BAC Information

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BAC

Clone NameB6Ng01-157E21
Chromosome1 (Build37)
Map Location 39,752,537 - 39,865,985
singlet/doubletdoublet
Overlap gene4933400N17Rik, LOC100042065
Upstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2
Downstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157E21.bB6Ng01-157E21.g
ACCDH951577DH951578
length1,002107
definitionDH951577|Mus musculus domesticus DNA, BAC clone: B6Ng01-157E21, 5' end.DH951578|Mus musculus domesticus DNA, BAC clone: B6Ng01-157E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,752,537 - 39,753,541)(39,865,879 - 39,865,985)
sequence
gaattctacctcaagaagtacagctctgcagtgactgcagctgagcagtg
tggtccccaagggcaggggccaggtctgtcctagctgagagtgatgtatg
ctggacactcaaaggcgaaaccaaaagggtgaaggaataaggacacagct
gacatgcgatccctaatactggtggatttgttagaatgtggctattttat
actcactgtttcttcctgctggagaacgttgctatagtcaggaaattttc
cgaaggcaataagattgccactgtgtaaaaacagacaacagagaaaccgt
atgactaagatacccgtcccggaacataagaacagaatttcctctgcagc
gagcttatttgtttggggtaaaactctttatcaaaaactcatcctccagg
ttcctgtgcacatatggtgattgtcacgtgcttggggattttttaaaagt
ttatttctgtatctgggacaaccttggagtttaattttaaatgctttgtt
cccttcaaaagcaagggtctgacatcattaaggtcacaacttcattcctg
tgggaaaagaaaacccaccgtgaaaatggagtcttgctgctttctgattt
ggtgttttccactagtgacccagacacgagagtggcgttaggtgatagat
gcagcgggacatgcttccacagaacacaggaactggggggttgatggtag
atctgtaagctccatttgtcatgtctgtggggctgccatgtgtgttaaga
gacatatacagtagacaacagacttcgtcccagttgcaccaggaaatgtg
ccccctctgggtgtgagagaggcgggtgtcttcttccctgtctgccccag
ggctaatgctagctgaggaggaggcgtggcttagaagtttcatttaccca
agtcagcatagtcctctgccgagaagtgcagagctgtagactagaatgtc
tctctcccctcaaagcatggagccatggtcagaagacacctaagagcgtt
gg
tctactgttgttttaatgcttctgcctggaatggcagcctcaggggatgc
tggggtagcagagacctggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39752537_39753541
seq2: B6Ng01-157E21.b_46_1047

seq1  GAATTCTACCTCAAGAAGTACAGCTCTGCAGTGACTGCAGCTGAGCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTCAAGAAGTACAGCTCTGCAGTGACTGCAGCTGAGCAGTG  50

seq1  TGGTCCCCAAGGGCAGGGGCCAGGTCTGTCCTAGCTGAGAGTGATGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCAAGGGCAGGGGCCAGGTCTGTCCTAGCTGAGAGTGATGTATG  100

seq1  CTGGACACTCAAAGGCGAAACCAAAAGGGTGAAGGAATAAGGACACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACTCAAAGGCGAAACCAAAAGGGTGAAGGAATAAGGACACAGCT  150

seq1  GACATGCGATCCCTAATACTGGTGGATTTGTTAGAATGTGGCTATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCGATCCCTAATACTGGTGGATTTGTTAGAATGTGGCTATTTTAT  200

seq1  ACTCACTGTTTCTTCCTGCTGGAGAACGTTGCTATAGTCAGGAAATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGTTTCTTCCTGCTGGAGAACGTTGCTATAGTCAGGAAATTTTC  250

seq1  CGAAGGCAATAAGATTGCCACTGTGTAAAAACAGACAACAGAGAAACCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGCAATAAGATTGCCACTGTGTAAAAACAGACAACAGAGAAACCGT  300

seq1  ATGACTAAGATACCCGTCCCGGAACATAAGAACAGAATTTCCTCTGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAGATACCCGTCCCGGAACATAAGAACAGAATTTCCTCTGCAGC  350

seq1  GAGCTTATTTGTTTGGGGTAAAACTCTTTATCAAAAACTCATCCTCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTATTTGTTTGGGGTAAAACTCTTTATCAAAAACTCATCCTCCAGG  400

seq1  TTCCTGTGCACATATGGTGATTGTCACGTGCTTGGGGATTTTTTAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGCACATATGGTGATTGTCACGTGCTTGGGGATTTTTTAAAAGT  450

seq1  TTATTTCTGTATCTGGGACAACCTTGGAGTTTAATTTTAAATGCTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGTATCTGGGACAACCTTGGAGTTTAATTTTAAATGCTTTGTT  500

seq1  CCCTTCAAAAGCAAGGGTCTGACATCATTAAGGTCACAACTTCATTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAAAGCAAGGGTCTGACATCATTAAGGTCACAACTTCATTCCTG  550

seq1  TGGGAAAAGAAAACCCACCGTGAAAATGGAGTCTTGCTGCTTTCTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAGAAAACCCACCGTGAAAATGGAGTCTTGCTGCTTTCTGATTT  600

seq1  GGTGTTTTCCACTAGTGACCCAGACACGAGAGTGGCGTTAGGTGATAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTCCACTAGTGACCCAGACACGAGAGTGGCGTTAGGTGATAGAT  650

seq1  GCAGCGGGACATGCTTCCACAGAACACAGGAACTGGGGGGTTGATGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGGGACATGCTTCCACAGAACACAGGAACTGGGGGGTTGATGGTAG  700

seq1  ATCTGTAAGCTCCATTTGTCATGTCTGTGGGGCTGCCATGTGTGTTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAAGCTCCATTTGTCATGTCTGTGGGGCTGCCATGTGTGTTAAGA  750

seq1  GACATATACAGTAGACAACAGACTTCGTCCCAGTTGCACCAGGAAATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATACAGTAGACAACAGACTTCGTCCCAGTTGCACCAGGAAATGTG  800

seq1  CCCCCTCTGGGTGTGAGAGAGGCGGGTGTCTTCTTCCCTGTCTGCCCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTGGGTGTGAGAGAGGCGGGTGTCTTCTTCCCTGTCTGCCCCAG  850

seq1  GGCTAAGGCTAAGCTGAGGAGGAGGCGTGGCTTAGAAGTTTCATCTACCC  900
      |||||| ||| ||||||||||||||||||||||||||||||||| |||||
seq2  GGCTAATGCT-AGCTGAGGAGGAGGCGTGGCTTAGAAGTTTCATTTACCC  899

seq1  AAGTCAGCATAGTCCTCTTGCCCGAG-AGTGCAGAGCTGTAGACTAGATT  949
      ||||||||||||||||||   ||||| ||||||||||||||||||||| |
seq2  AAGTCAGCATAGTCCTCT--GCCGAGAAGTGCAGAGCTGTAGACTAGAAT  947

seq1  GTCTCTCTCCCCTCAGAGCATGGAGCCATGGTCAGGAGGACACCTAGGAG  999
      ||||||||||||||| |||||||||||||||||| || |||||||| |||
seq2  GTCTCTCTCCCCTCAAAGCATGGAGCCATGGTCA-GAAGACACCTAAGAG  996

seq1  CGTTGG  1005
      ||||||
seq2  CGTTGG  1002

seq1: chr1_39865879_39865985
seq2: B6Ng01-157E21.g_72_178 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACGCCAGGTCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACGCCAGGTCTCTGC  50

seq1  TACCCCAGCATCCCCTGAGGCTGCCATTCCAGGCAGAAGCATTAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAGCATCCCCTGAGGCTGCCATTCCAGGCAGAAGCATTAAAACAA  100

seq1  CAGTAGA  107
      |||||||
seq2  CAGTAGA  107