BAC Information

Click to search

BAC

Clone NameB6Ng01-157M24
Chromosome1 (Build37)
Map Location 113,038,084 - 113,179,680
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157M24.bB6Ng01-157M24.g
ACCDH951943DH951944
length1,0341,189
definitionDH951943|Mus musculus domesticus DNA, BAC clone: B6Ng01-157M24, 5' end.DH951944|Mus musculus domesticus DNA, BAC clone: B6Ng01-157M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,178,648 - 113,179,680)(113,038,084 - 113,039,289)
sequence
gaattctctggatggcctttcctttagtctctgtccccccttctaagaag
gactgaagcacctacacattggtcttccttcctgttgagtttcatgtggt
ctgtgaattgtatgctgggcattctaagattttaggtaggagaatgccag
gtcaggaatgcagaaaagggtaggtgggtacatgggtgagcaccctcata
gatgggatgggggtttctggaggggaaccaaggagaggggataacttttc
aaatgtaaataaataaaatatccattaaaatatataaataaattcagaaa
agaagaaagagagaaaaagaaaaagagagagagagagagagagagagaga
gagagagagagcgagagagagagcagcactacctcttcaggccagagggt
gacatcttccttggacctgccttctccacaagctgcctttgttcagctac
actatctgactagacacattcagaagcaagcagttgataacatccacaga
tgacagcctcgagtccctccatggacagatgaactcttctgctggggcct
aatagggactaaatttgaaagactttgcatagtaatgaggacaaaagtta
tgtctgtgtaaatgaagtaaatgttttttgagaccaatgtttacactctc
aaaaatctctgtacagattttctcaagatttcaattaactgagcaattaa
gttggttcaataatcccttatctccacggcttgcacccctctatgtccct
ttagtttatgtcatttcattttgatgtttacatactgtctcatgacattt
ttaaaatggcagatagtagcattgcaaaattcactgctgatgagcttctg
gttcagtactaagccattttcaacctagaggctgaatactttagtgacat
ttcttccattaaaaaataaatgggggggagatgtgggaaaattctagtat
taacgtcaaaagtcacgaatggcttagaacgctcagcttcagtatgagac
tctttcattaaccagacttggtcttttctgatct
gaattctgaatggaaaacacacaacatgccttaagattatgaagtgggga
caattggttcattagcagagctgcacatattttgcccaagccacatgggt
ttggggctaggacaaaaggcatctaaattggcacccatactttttgtgtt
catggtgtaagctatgatatggctgtgtctccaaatctgaaccagacaat
tctggtagtaggcttagaatccagcctgagtacttctcaaaggcttctaa
gctgcctcagagagattgaactcagagattctgggagtccctgctctgcg
aggagacacactactcaaaagaaatagaagcagattgtagaggcagctta
tctattacaatcaagtaaaatgaatagaaataatgaaaatttaagaagtc
aatgttttgtaaacaactgggttctttgactggagggctccatggaaatt
ctaggattgcttagcatggtatatgatactgtcaggttgaaaatatgctt
ataatgtgtatagaaggatttagtggagctaaatatgaaaaatattaaat
catctcatataaagagaaagatgatatatatacccatagagatattaatc
tacagaagggagaatgagtgaaaattgcttaatcattttacaatatgtat
agatgaataaataaatttaggcattagatgaaaaaaaaaacaaaaaagaa
aggagtttgggaggatcacttttcaatggataatagttgtttaaaattgc
tttaattgctttaagttgccttaattaccaagacacagatggttataagt
ttggtctttaaagtattacacatccactatgagagaggtcaaaatagtac
aggcctaaaaaaaaaaaggaaactgttaaattaaatcaatctatcatttt
gatgatttcagtgttaggtcaaagacatgctatttgggagagggctctat
atttgtgttaacagaaaagaagaaaagctgtgatctcttcctaagtcaca
atggatcagataaataagaagaatcctggaacatcttggctaacagaata
aaaaaaattcaggaaggatcaaaaggaacgatcaattatttgccttattc
ctccaatgaaacgtttccggaactgcctgaatagaaaaattctctagaca
aacttggcctaattagccaatattgtttgctaaaaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113178648_113179680
seq2: B6Ng01-157M24.b_46_1079 (reverse)

seq1  AGATCAGAAAAGGACAAGTCTGGTTAATGAAAGGAGTCTCCAATACTG-A  49
      ||||||||||||  |||||||||||||||||| |||||||  |||||| |
seq2  AGATCAGAAAAGACCAAGTCTGGTTAATGAAA-GAGTCTC--ATACTGAA  47

seq1  GCTGAGCGTTCT-AGCCA-TCGTGAATTTTGACGTTAATTACTAGAATTT  97
      |||||||||||| ||||| |||||| |||||||||||| |||||||||||
seq2  GCTGAGCGTTCTAAGCCATTCGTGACTTTTGACGTTAA-TACTAGAATTT  96

seq1  TCCCACATCT-CCCCCCATTTATTTTTTAATGG-AGAAATGTCACTAAAG  145
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  TCCCACATCTCCCCCCCATTTATTTTTTAATGGAAGAAATGTCACTAAAG  146

seq1  TATTCAGCCTCTAGGTTGAAAATGGCTTAGTACTGAACCAGAAGCTCATC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGCCTCTAGGTTGAAAATGGCTTAGTACTGAACCAGAAGCTCATC  196

seq1  AGCAGTGAATTTTGCAATGCTACTATCTGCCATTTTAAAAATGTCATGAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGAATTTTGCAATGCTACTATCTGCCATTTTAAAAATGTCATGAG  246

seq1  ACAGTATGTAAACATCAAAATGAAATGACATAAACTAAAGGGACATAGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATGTAAACATCAAAATGAAATGACATAAACTAAAGGGACATAGAG  296

seq1  GGGTGCAAGCCGTGGAGATAAGGGATTATTGAACCAACTTAATTGCTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAAGCCGTGGAGATAAGGGATTATTGAACCAACTTAATTGCTCAG  346

seq1  TTAATTGAAATCTTGAGAAAATCTGTACAGAGATTTTTGAGAGTGTAAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAAATCTTGAGAAAATCTGTACAGAGATTTTTGAGAGTGTAAAC  396

seq1  ATTGGTCTCAAAAAACATTTACTTCATTTACACAGACATAACTTTTGTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTCAAAAAACATTTACTTCATTTACACAGACATAACTTTTGTCC  446

seq1  TCATTACTATGCAAAGTCTTTCAAATTTAGTCCCTATTAGGCCCCAGCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTATGCAAAGTCTTTCAAATTTAGTCCCTATTAGGCCCCAGCAG  496

seq1  AAGAGTTCATCTGTCCATGGAGGGACTCGAGGCTGTCATCTGTGGATGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCATCTGTCCATGGAGGGACTCGAGGCTGTCATCTGTGGATGTT  546

seq1  ATCAACTGCTTGCTTCTGAATGTGTCTAGTCAGATAGTGTAGCTGAACAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGCTTGCTTCTGAATGTGTCTAGTCAGATAGTGTAGCTGAACAA  596

seq1  AGGCAGCTTGTGGAGAAGGCAGGTCCAAGGAAGATGTCACCCTCTGGCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTTGTGGAGAAGGCAGGTCCAAGGAAGATGTCACCCTCTGGCCT  646

seq1  GAAGAGGTAGTGCTGCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTAGTGCTGCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTC  696

seq1  TCTCTCTCTCTCTCTTTTTCTTTTTCTCTCTTTCTTCTTTTCTGAATTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTTTTTCTTTTTCTCTCTTTCTTCTTTTCTGAATTTA  746

seq1  TTTATATATTTTAATGGATATTTTATTTATTTACATTTGAAAAGTTATCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATTTTAATGGATATTTTATTTATTTACATTTGAAAAGTTATCC  796

seq1  CCTCTCCTTGGTTCCCCTCCAGAAACCCCCATCCCATCTATGAGGGTGCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTTGGTTCCCCTCCAGAAACCCCCATCCCATCTATGAGGGTGCT  846

seq1  CACCCATGTACCCACCTACCCTTTTCTGCATTCCTGACCTGGCATTCTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGTACCCACCTACCCTTTTCTGCATTCCTGACCTGGCATTCTCC  896

seq1  TACCTAAAATCTTAGAATGCCCAGCATACAATTCACAGACCACATGAAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAAATCTTAGAATGCCCAGCATACAATTCACAGACCACATGAAAC  946

seq1  TCAACAGGAAGGAAGACCAATGTGTAGGTGCTTCAGTCCTTCTTAGAAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGAAGGAAGACCAATGTGTAGGTGCTTCAGTCCTTCTTAGAAGG  996

seq1  GGGGACAGAGACTAAAGGAAAGGCCATCCAGAGAATTC  1033
      ||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGAGACTAAAGGAAAGGCCATCCAGAGAATTC  1034

seq1: chr1_113038084_113039289
seq2: B6Ng01-157M24.g_68_1256

seq1  GAATTCTGAATGGAAAACACACAACATGCCTTAAGATTATGAAGTGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAATGGAAAACACACAACATGCCTTAAGATTATGAAGTGGGGA  50

seq1  CAATTGGTTCATTAGCAGAGCTGCACATATTTTGCCCAAGCCACATGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGTTCATTAGCAGAGCTGCACATATTTTGCCCAAGCCACATGGGT  100

seq1  TTGGGGCTAGGACAAAAGGCATCTAAATTGGCACCCATACTTTTTGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTAGGACAAAAGGCATCTAAATTGGCACCCATACTTTTTGTGTT  150

seq1  CATGGTGTAAGCTATGATATGGCTGTGTCTCCAAATCTGAACCAGACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTAAGCTATGATATGGCTGTGTCTCCAAATCTGAACCAGACAAT  200

seq1  TCTGGTAGTAGGCTTAGAATCCAGCCTGAGTACTTCTCAAAGGCTTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAGTAGGCTTAGAATCCAGCCTGAGTACTTCTCAAAGGCTTCTAA  250

seq1  GCTGCCTCAGAGAGATTGAACTCAGAGATTCTGGGAGTCCCTGCTCTGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCAGAGAGATTGAACTCAGAGATTCTGGGAGTCCCTGCTCTGCG  300

seq1  AGGAGACACACTACTCAAAAGAAATAGAAGCAGATTGTAGAGGCAGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACACACTACTCAAAAGAAATAGAAGCAGATTGTAGAGGCAGCTTA  350

seq1  TCTATTACAATCAAGTAAAATGAATAGAAATAATGAAAATTTAAGAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACAATCAAGTAAAATGAATAGAAATAATGAAAATTTAAGAAGTC  400

seq1  AATGTTTTGTAAACAACTGGGTTCTTTGACTGGAGGGCTCCATGGAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTGTAAACAACTGGGTTCTTTGACTGGAGGGCTCCATGGAAATT  450

seq1  CTAGGATTGCTTAGCATGGTATATGATACTGTCAGGTTGAAAATATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTGCTTAGCATGGTATATGATACTGTCAGGTTGAAAATATGCTT  500

seq1  ATAATGTGTATAGAAGGATTTAGTGGAGCTAAATATGAAAAATATTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGTATAGAAGGATTTAGTGGAGCTAAATATGAAAAATATTAAAT  550

seq1  CATCTCATATAAAGAGAAAGATGATATATATACCCATAGAGATATTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATATAAAGAGAAAGATGATATATATACCCATAGAGATATTAATC  600

seq1  TACAGAAGGGAGAATGAGTGAAAATTGCTTAATCATTTTACAATATGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGGGAGAATGAGTGAAAATTGCTTAATCATTTTACAATATGTAT  650

seq1  AGATGAATAAATAAATTTAGGCATTAGATGAAAAAAAAAACAAAAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATAAATAAATTTAGGCATTAGATGAAAAAAAAAACAAAAAAGAA  700

seq1  AGGAGTTTGGGAGGATCACTTTTCAATGGATAATAGTTGTTTAAAATTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTGGGAGGATCACTTTTCAATGGATAATAGTTGTTTAAAATTGC  750

seq1  TTTAATTGCTTTAAGTTGCCTTAATTACCAAGACACAGATGGTTATAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGCTTTAAGTTGCCTTAATTACCAAGACACAGATGGTTATAAGT  800

seq1  TTGGTCTTTAAAGTATTACACATCCACTATGAGAGAGGTCAAAATAGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTTAAAGTATTACACATCCACTATGAGAGAGGTCAAAATAGTAC  850

seq1  AGGCCTAAAAAAAAAAAAGGAAACTGTTAAATTAAATCAATCTATCATTT  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCT-AAAAAAAAAAAGGAAACTGTTAAATTAAATCAATCTATCATTT  899

seq1  TGATGATTTCAGGTTGTTAGGTCAAAGACATGCTATTTTGGGAGAGGGGC  950
      ||||||||||||  ||||||||||||||||||||| ||||||||| ||||
seq2  TGATGATTTCAG--TGTTAGGTCAAAGACATGCTA-TTTGGGAGA-GGGC  945

seq1  TCTATATTTGTGTTAACAGAAAAGAAGAAAAGGCTGTGGATCCCTTCCTA  1000
      ||||||||||||||||||||||||||||||| ||||| |||| |||||||
seq2  TCTATATTTGTGTTAACAGAAAAGAAGAAAA-GCTGT-GATCTCTTCCTA  993

seq1  AGTCAC-ATGGATCAGATATAATAAGGAAGACCCCT-GAACATCTTGGCT  1048
      |||||| |||||||||||| ||||| |||||  ||| |||||||||||||
seq2  AGTCACAATGGATCAGATA-AATAA-GAAGAATCCTGGAACATCTTGGCT  1041

seq1  -ACAGATAGAAAAAAATTCAAGAA-GATCAAACAGAACAGATACCATTAT  1096
       |||||   ||||||||||| ||| |||||||  |||| ||| | |||||
seq2  AACAGAATAAAAAAAATTCAGGAAGGATCAAAAGGAAC-GAT-CAATTAT  1089

seq1  TTG-CTTATTCCTCCACATGGGAACAGTCCCGAAACTGGCTTAAATATGA  1145
      ||| |||||||||||| || | |||  | ||| |||| || | |||| ||
seq2  TTGCCTTATTCCTCCA-AT-GAAACGTTTCCGGAACT-GCCTGAATA-GA  1135

seq1  AAATATCTCTAGACAAAACTTTGGCTAAAATTAGCCAATAAATTTTGTTG  1195
      |||  ||||||||| |||||| | ||  ||||||||||||    ||||| 
seq2  AAAATTCTCTAGAC-AAACTTGGCCT--AATTAGCCAATA----TTGTTT  1178

seq1  GTTAAAAATCC  1206
      | |||||||||
seq2  GCTAAAAATCC  1189