BAC Information

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BAC

Clone NameB6Ng01-158I14
Chromosome1 (Build37)
Map Location 74,879,176 - 75,041,391
singlet/doubletdoublet
Overlap geneCdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901
Downstream geneSlc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158I14.bB6Ng01-158I14.g
ACCDH952458DH952459
length2321,117
definitionDH952458|Mus musculus domesticus DNA, BAC clone: B6Ng01-158I14, 5' end.DH952459|Mus musculus domesticus DNA, BAC clone: B6Ng01-158I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,879,176 - 74,879,407)(75,040,256 - 75,041,391)
sequence
cattgattaattataggtctaaggtctgaggagacctctgaattgggtct
tgaaaggtcttgaaacccttgacttctatagaactcctgtctgccccatg
cagacacaccccagctgcagagcatccagccagtcataagatgcagatgt
gagggtatctgtagtgatgcaagttggcaagattcaacctgtctggctcc
tcctcctctccctcctcctctccctccacctc
gaattcccagttcctccccttgacatctcaagccaaaacctcctcagttg
atggcaacttcatccttccagttgctcaggctgaaaatcctggaggcttg
tttgacttatctcagaagattcttatagctcatctttcaaaattaaattc
agaatctgcctctgattctaccactggatctgaggttcacttatctctcc
cttaggcttgctcactgggctgctttcactccacagtgacttctttactg
gtctctggacattcagccctgaaccttctgtctctcttaagtggaaccta
aaatgatcatttaaattttttttagatttatttatttatttttatgtatg
aatacactgttgctgtcttcagacacaccagaagagggcatcagatccca
ttacagatggttgtgagccaccatgtggttgctgggatttgaactcagga
tctctggaagagcagtcagtgctcttgaccactgagccatctctccagcc
caatcatttaaatttttatatttcttcttgccacttcatgtgtacaactg
cgtgcatatgtgtgaccgagtttgcacgtatgcaagcatgtgtgggccag
caagttccaaggatccttccttctcttcatctctacccagggttggggtt
ccaggcttgagaccactcctattttaatgtgggttctgaggatatgaact
caggccctcatgtttgtgcagtcttaagctccttggactctggcatccaa
attgtaaagtatttccaggtgaagcacagtgctgtttacccagcaaggct
ctaccttcctcagtctacattttgcttttttgagctcctttgctttgtct
gttttactggtttatttgttgtttgtgtgcatgtgctatgcaagcgtgga
gatcagaaaacaacttcaggagtccgttttctcttccacatgtgagttca
ggggaccaagttcaggcctcagttgtgagcaggtgctgagcagctcactg
ggtcagcttgcagattctgaagctcttttcctgtcccggtctgatgtcat
ctcttgaaaattattgcttcctcactctttagccacccttttcttactcc
ttctaaaaatttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74879176_74879407
seq2: B6Ng01-158I14.b_50_281

seq1  CATTGATTAATTATAGGTCTAAGGTCTGAGGAGACCTCTGAATTGGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTAATTATAGGTCTAAGGTCTGAGGAGACCTCTGAATTGGGTCT  50

seq1  TGAAAGGTCTTGAAACCCTTGACTTCTATAGAACTCCTGTCTGCCCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTCTTGAAACCCTTGACTTCTATAGAACTCCTGTCTGCCCCATG  100

seq1  CAGACACACCCCAGCTGCAGAGCATCCAGCCAGTCATAAGATGCAGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACCCCAGCTGCAGAGCATCCAGCCAGTCATAAGATGCAGATGT  150

seq1  GAGGGTATCTGTAGTGATGCAAGTTGGCAAGATTCAACCTGTCTGGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTATCTGTAGTGATGCAAGTTGGCAAGATTCAACCTGTCTGGCTCC  200

seq1  TCCTCCTCTCCCTCCTCCTCTCCCTCCTCCTC  232
      ||||||||||||||||||||||||||| ||||
seq2  TCCTCCTCTCCCTCCTCCTCTCCCTCCACCTC  232

seq1: chr1_75040256_75041391
seq2: B6Ng01-158I14.g_69_1184 (reverse)

seq1  AAAAAAAATTATTTTAGAGAGGTAGTAAGGAAAAGGGTGGCTAAAGAGCT  50
      |||||||||  ||||||| ||| ||||| ||||||||||||||||||| |
seq2  AAAAAAAAT--TTTTAGA-AGG-AGTAA-GAAAAGGGTGGCTAAAGAG-T  44

seq1  GAGGGAAGCAATAAATGTATCAAAGAGATGACATCAGAACCGGGACCAGG  100
      || |||||||||||   | |  ||||||||||||||| ||||||| ||||
seq2  GA-GGAAGCAATAA---TTTTCAAGAGATGACATCAG-ACCGGGA-CAGG  88

seq1  GAAAGAGGCTTCAGAATCTGGCAAGCTGAACCAGTGAGGCTGCTCAGCAC  150
       ||||| |||||||||||| ||||||||| ||||||| ||||||||||||
seq2  AAAAGA-GCTTCAGAATCT-GCAAGCTGACCCAGTGA-GCTGCTCAGCAC  135

seq1  CTGCTCACAACCTGAGGGCCTGAACTTGGTCCCCTGAACTCACATGGTGG  200
      |||||||||| |||| ||||||||||||||||||||||||||||| ||||
seq2  CTGCTCACAA-CTGA-GGCCTGAACTTGGTCCCCTGAACTCACAT-GTGG  182

seq1  AAGGAGAAAACGGACTCCTGAAAGTTGTTTTCTGATCTCCACGCTTGCAT  250
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AA-GAGAAAACGGACTCCTG-AAGTTGTTTTCTGATCTCCACGCTTGCAT  230

seq1  AGCACATGCACACAAACAACAAATAAACCAGTAAAACAGACAAAGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGCACACAAACAACAAATAAACCAGTAAAACAGACAAAGCAAAG  280

seq1  GAGCTCAAAAAAGCAAAATGTAGACTGAGGAAGGTAGAGCCTTGCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAAAAAAGCAAAATGTAGACTGAGGAAGGTAGAGCCTTGCTGGGT  330

seq1  AAACAGCACTGTGCTTCACCTGGAAATACTTTACAATTTGGATGCCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCACTGTGCTTCACCTGGAAATACTTTACAATTTGGATGCCAGAG  380

seq1  TCCAAGGAGCTTAAGACTGCACAAACATGAGGGCCTGAGTTCATATCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAGCTTAAGACTGCACAAACATGAGGGCCTGAGTTCATATCCTC  430

seq1  AGAACCCACATTAAAATAGGAGTGGTCTCAAGCCTGGAACCCCAACCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCACATTAAAATAGGAGTGGTCTCAAGCCTGGAACCCCAACCCTG  480

seq1  GGTAGAGATGAAGAGAAGGAAGGATCCTTGGAACTTGCTGGCCCACACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGATGAAGAGAAGGAAGGATCCTTGGAACTTGCTGGCCCACACAT  530

seq1  GCTTGCATACGTGCAAACTCGGTCACACATATGCACGCAGTTGTACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCATACGTGCAAACTCGGTCACACATATGCACGCAGTTGTACACAT  580

seq1  GAAGTGGCAAGAAGAAATATAAAAATTTAAATGATTGGGCTGGAGAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCAAGAAGAAATATAAAAATTTAAATGATTGGGCTGGAGAGATG  630

seq1  GCTCAGTGGTCAAGAGCACTGACTGCTCTTCCAGAGATCCTGAGTTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGTCAAGAGCACTGACTGCTCTTCCAGAGATCCTGAGTTCAAA  680

seq1  TCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGC  730

seq1  CCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTATTCATACATAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTATTCATACATAAAAAT  780

seq1  AAATAAATAAATCTAAAAAAAATTTAAATGATCATTTTAGGTTCCACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATCTAAAAAAAATTTAAATGATCATTTTAGGTTCCACTTA  830

seq1  AGAGAGACAGAAGGTTCAGGGCTGAATGTCCAGAGACCAGTAAAGAAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAAGGTTCAGGGCTGAATGTCCAGAGACCAGTAAAGAAGTC  880

seq1  ACTGTGGAGTGAAAGCAGCCCAGTGAGCAAGCCTAAGGGAGAGATAAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGAGTGAAAGCAGCCCAGTGAGCAAGCCTAAGGGAGAGATAAGTG  930

seq1  AACCTCAGATCCAGTGGTAGAATCAGAGGCAGATTCTGAATTTAATTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAGATCCAGTGGTAGAATCAGAGGCAGATTCTGAATTTAATTTTG  980

seq1  AAAGATGAGCTATAAGAATCTTCTGAGATAAGTCAAACAAGCCTCCAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAGCTATAAGAATCTTCTGAGATAAGTCAAACAAGCCTCCAGGA  1030

seq1  TTTTCAGCCTGAGCAACTGGAAGGATGAAGTTGCCATCAACTGAGGAGGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCCTGAGCAACTGGAAGGATGAAGTTGCCATCAACTGAGGAGGT  1080

seq1  TTTGGCTTGAGATGTCAAGGGGAGGAACTGGGAATT  1136
      ||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTGAGATGTCAAGGGGAGGAACTGGGAATT  1116