BAC Information

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BAC

Clone NameB6Ng01-158I23
Chromosome1 (Build37)
Map Location 56,065,916 - 56,241,047
singlet/doubletdoublet
Overlap genenone
Upstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158I23.bB6Ng01-158I23.g
ACCDH952476DH952477
length1,0591,026
definitionDH952476|Mus musculus domesticus DNA, BAC clone: B6Ng01-158I23, 5' end.DH952477|Mus musculus domesticus DNA, BAC clone: B6Ng01-158I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,065,916 - 56,066,991)(56,240,025 - 56,241,047)
sequence
gaattcccaaaattacatgagaatctacatgcaagactctgagggtccct
gctcccaattagttctgattgataaattaagttgccgctgaccagtgtct
gggtagggagacagaggtgggactttagggttcaggggcaagggaacttg
gagaggaagaaggatgaagaaccgccatgccaggaaaggcgtaaggtcca
ggggctgatgtttcatcatgagtaccatgggtgaatagatagttccacaa
cagaggactagttcctaaaggcctatttctctctataatggtgacatcct
ctgaagagctcctatgagacaacacaagtccacataaggatgagcacaac
tgagatccgtggggacaactttagctatgcttacattttaatttgaagta
taacaacgaagaattaagtcatatcaataaatcaaaatcagtaagtttaa
acacaaagaaaatcgactggagacatagtatttattactcttcagtagta
ctttctcgggccgatttttagagcttctgttaatgagaaggcatcgactc
agttactaatccctaataacaataattatacctcactaacagtaggtgga
taggctcgggaatgtaattttcccagttaacttgtgctccctagcagcaa
aacaaaggctcaacagtcactctaatggatttaaaataacagaataagct
tttctctgtaatccctttaggtgtgtgattataatcgaaaggctcagtga
ttctcctagggtcaggaaatttttatgggaaagaggtactttctcataca
ggaggagcacgcaggtggatctgtgtttaagcaagatggatttttcagag
cattgatggcacagtggccagagatctatactttgctgggagcaatcatg
gcggagacccgtatttcctaagcacaaagcagctctgtaacacaagccca
ttgtgaatcctcatgcgcaaactgagcggtctttccagcagactgactgg
ctctgtgctctgtgtgcactgtctgtaagatgacttcatgacaccatggt
tgaagatca
gaattctttttggaaagaactattagtatattaaaaataagcattagagt
ttggggaggaaaaaggaatagggtgtgacatttttcatgtggctagagtg
aagtaagagatttgaaggcgaaacaaatctggcaaattataagttatggt
agtaattcaaggaagtcataaaatagaagacttttattgcaccagagaga
cagtttggtgctattagtggattaaaaagcatgtgggtctgagagtctca
gaaagatggaagcttgaaagcgctggtgggttaaatattaacagagaaaa
gatgtttactgacagattctgcaaacacactctaataaataggatcctcc
aaagcattcaaaaatagaactgtgcaaagccacaggaatccatgctatcg
aacttcccaccaaattttgctctcctgcagtaatgcatcactcccctgct
agtccttcagcacagccgtgccagaacactcgaaagctagtaaaaataga
gggggtgggagattggtgacaattttgcacttgtctttaaaagctggctc
cctgcgctgaaggcagcgaactgtggtgcaaacgtgtgaatgtgagcttc
caacagacctgagctcaaagcaagctgcacacttgagcctctgggagcct
cagagtccttatctgaattaatggcaccaccatgcatatttctcagggct
gcttttcagtgcttaaaatgtaacactcaaacatactaagatacaaatcc
aattctgtaagtctggcctaggcctccgatgagcgtttgtagcaagctcc
cagtattgcccacactgctggtccaggagcagacattgagtgaagggtac
aactttttctaagaatttagtgtgcacttaactgccacttcataatagca
ctattctttgatttgggtgtaaactggttctcactctacaaaactgtctt
tgagcaaagggaaatacggccttaacatcttccagaggctctaaagaaac
atctggtgggatgctggggcctcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56065916_56066991
seq2: B6Ng01-158I23.b_47_1105

seq1  GAATTCCCAAAATTACATGAGAATCTACATGCAAGACTCTGAGGGTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAATTACATGAGAATCTACATGCAAGACTCTGAGGGTCCCT  50

seq1  GCTCCCAATTAGTTCTGATTGATAAATTAAGTTGCCGCTGACCAGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAATTAGTTCTGATTGATAAATTAAGTTGCCGCTGACCAGTGTCT  100

seq1  GGGTAGGGAGACAGAGGTGGGACTTTAGGGTTCAGGGGCAAGGGAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGAGACAGAGGTGGGACTTTAGGGTTCAGGGGCAAGGGAACTTG  150

seq1  GAGAGGAAGAAGGATGAAGAACCGCCATGCCAGGAAAGGCGTAAGGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAGAAGGATGAAGAACCGCCATGCCAGGAAAGGCGTAAGGTCCA  200

seq1  GGGGCTGATGTTTCATCATGAGTACCATGGGTGAATAGATAGTTCCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGATGTTTCATCATGAGTACCATGGGTGAATAGATAGTTCCACAA  250

seq1  CAGAGGACTAGTTCCTAAAGGCCTATTTCTCTCTATAATGGTGACATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACTAGTTCCTAAAGGCCTATTTCTCTCTATAATGGTGACATCCT  300

seq1  CTGAAGAGCTCCTATGAGACAACACAAGTCCACATAAGGATGAGCACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGCTCCTATGAGACAACACAAGTCCACATAAGGATGAGCACAAC  350

seq1  TGAGATCCGTGGGGACAACTTTAGCTATGCTTACATTTTAATTTGAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCGTGGGGACAACTTTAGCTATGCTTACATTTTAATTTGAAGTA  400

seq1  TAACAACGAAGAATTAAGTCATATCAATAAATCAAAATCAGTAAGTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACGAAGAATTAAGTCATATCAATAAATCAAAATCAGTAAGTTTAA  450

seq1  ACACAAAGAAAATCGACTGGAGACATAGTATTTATTACTCTTCAGTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGAAAATCGACTGGAGACATAGTATTTATTACTCTTCAGTAGTA  500

seq1  CTTTCTCGGGCCGATTTTTAGAGCTTCTGTTAATGAGAAGGCATCGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCGGGCCGATTTTTAGAGCTTCTGTTAATGAGAAGGCATCGACTC  550

seq1  AGTTACTAATCCCTAATAACAATAATTATACCTCACTAACAGTAGGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTAATCCCTAATAACAATAATTATACCTCACTAACAGTAGGTGGA  600

seq1  TAGGCTCGGGAATGTAATTTTCCCAGTTAACTTGTGCTCCCTAGCAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCGGGAATGTAATTTTCCCAGTTAACTTGTGCTCCCTAGCAGCAA  650

seq1  AACAAAGGCTCAACAGTCACTCTAATGGATTTAAAATAACAGAATAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGCTCAACAGTCACTCTAATGGATTTAAAATAACAGAATAAGCT  700

seq1  TTTCTCTGTAATCCCTTTAGGTGTGTGATTATAATCGAAAGGCTCAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTAATCCCTTTAGGTGTGTGATTATAATCGAAAGGCTCAGTGA  750

seq1  TTCTCCTAGGGTCAGGAAATTTTTATGGGAAAGAGGTACTTTCTCATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTAGGGTCAGGAAATTTTTATGGGAAAGAGGTACTTTCTCATACA  800

seq1  GGAGGAGCAGGCAGGTGGATCTGTGTTTAAGCAAGATGGATTTTTCAGAG  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCACGCAGGTGGATCTGTGTTTAAGCAAGATGGATTTTTCAGAG  850

seq1  CATTGATGGCACAGTGGCCAGAGATCTATACTTTGCTGGGAGCAATCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGGCACAGTGGCCAGAGATCTATACTTTGCTGGGAGCAATCATG  900

seq1  GCGGAGACCCGTATTTCCTAAGGCCACAAAGCAGCTCTGTAAACACAAGG  950
      ||||||||||||||||||||||  |||||||||||||||| ||||||| |
seq2  GCGGAGACCCGTATTTCCTAAG--CACAAAGCAGCTCTGT-AACACAA-G  946

seq1  CCCATTGGTGGAATCCCCATGCGCAAAACTGAGCGGTCTTCCCAGCAGGA  1000
      |||||||   |||||| ||||||| ||||||||||||||| |||||||  
seq2  CCCATTG--TGAATCCTCATGCGC-AAACTGAGCGGTCTTTCCAGCAG--  991

seq1  CCTGACTGGCTCTGTGCTTCTGTGTGCACTGTCTGTAAAGATGGACTTTC  1050
       |||||||||||||||| |||||||||||||||||| ||||| ||| |||
seq2  ACTGACTGGCTCTGTGC-TCTGTGTGCACTGTCTGT-AAGAT-GAC-TTC  1037

seq1  AATTGGACACCATGGTTTGAAGATCA  1076
      |    |||||||||| ||||||||||
seq2  A---TGACACCATGG-TTGAAGATCA  1059

seq1: chr1_56240025_56241047
seq2: B6Ng01-158I23.g_69_1094 (reverse)

seq1  TATGA-GCACCAGCAT-CCACCAGAATGTGTCTTTAGAGCCTCTGG-AGA  47
      ||||| || ||||||| ||||||| |||| |||||||||||||||| |||
seq2  TATGAGGCCCCAGCATCCCACCAG-ATGTTTCTTTAGAGCCTCTGGAAGA  49

seq1  TGGTAAGGCCTTATTTCCCTTTGCTCAAAGACAGTTTTGTAGAGTGAGAA  97
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGGCCGTATTTCCCTTTGCTCAAAGACAGTTTTGTAGAGTGAGAA  99

seq1  CCAGTTTACACCCAAATCAAAGAATAGTGCTATTATGAAGTGGCAGTTAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTACACCCAAATCAAAGAATAGTGCTATTATGAAGTGGCAGTTAA  149

seq1  GTGCACACTAAATTCTTAG-AAAAGTTGTACCCTTCACTCAATGTCTGCT  196
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGCACACTAAATTCTTAGAAAAAGTTGTACCCTTCACTCAATGTCTGCT  199

seq1  CCTGGACCAGCAGTGTGGGCAATACTGGGAGCTTGCTACAAACGCTCATC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCAGCAGTGTGGGCAATACTGGGAGCTTGCTACAAACGCTCATC  249

seq1  GGAGGCCTAGGCCAGACTTACAGAATTGGATTTGTATCTTAGTATGTTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTAGGCCAGACTTACAGAATTGGATTTGTATCTTAGTATGTTTG  299

seq1  AGTGTTACATTTTAAGCACTGAAAAGCAGCCCTGAGAAATATGCATGGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACATTTTAAGCACTGAAAAGCAGCCCTGAGAAATATGCATGGTG  349

seq1  GTGCCATTAATTCAGATAAGGACTCTGAGGCTCCCAGAGGCTCAAGTGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTAATTCAGATAAGGACTCTGAGGCTCCCAGAGGCTCAAGTGTG  399

seq1  CAGCTTGCTTTGAGCTCAGGTCTGTTGGAAGCTCACATTCACACGTTTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCTTTGAGCTCAGGTCTGTTGGAAGCTCACATTCACACGTTTGC  449

seq1  ACCACAGTTCGCTGCCTTCAGCGCAGGGAGCCAGCTTTTAAAGACAAGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTTCGCTGCCTTCAGCGCAGGGAGCCAGCTTTTAAAGACAAGTG  499

seq1  CAAAATTGTCACCAATCTCCCACCCCCTCTATTTTTACTAGCTTTCGAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGTCACCAATCTCCCACCCCCTCTATTTTTACTAGCTTTCGAGT  549

seq1  GTTCTGGCACGGCTGTGCTGAAGGACTAGCAGGGGAGTGATGCATTACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGCACGGCTGTGCTGAAGGACTAGCAGGGGAGTGATGCATTACTG  599

seq1  CAGGAGAGCAAAATTTGGTGGGAAGTTCGATAGCATGGATTCCTGTGGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGCAAAATTTGGTGGGAAGTTCGATAGCATGGATTCCTGTGGCT  649

seq1  TTGCACAGTTCTATTTTTGAATGCTTTGGAGGATCCTATTTATTAGAGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGTTCTATTTTTGAATGCTTTGGAGGATCCTATTTATTAGAGTG  699

seq1  TGTTTGCAGAATCTGTCAGTAAACATCTTTTCTCTGTTAATATTTAACCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCAGAATCTGTCAGTAAACATCTTTTCTCTGTTAATATTTAACCC  749

seq1  ACCAGCGCTTTCAAGCTTCCATCTTTCTGAGACTCTCAGACCCACATGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCGCTTTCAAGCTTCCATCTTTCTGAGACTCTCAGACCCACATGCT  799

seq1  TTTTAATCCACTAATAGCACCAAACTGTCTCTCTGGTGCAATAAAAGTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCCACTAATAGCACCAAACTGTCTCTCTGGTGCAATAAAAGTCT  849

seq1  TCTATTTTATGACTTCCTTGAATTACTACCATAACTTATAATTTGCCAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTATGACTTCCTTGAATTACTACCATAACTTATAATTTGCCAGA  899

seq1  TTTGTTTCGCCTTCAAATCTCTTACTTCACTCTAGCCACATGAAAAATGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCGCCTTCAAATCTCTTACTTCACTCTAGCCACATGAAAAATGT  949

seq1  CACACCCTATTCCTTTTTCCTCCCCAAACTCTAATGCTTATTTTTAATAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCTATTCCTTTTTCCTCCCCAAACTCTAATGCTTATTTTTAATAT  999

seq1  ACTAATAGTTCTTTCCAAAAAGAATTC  1023
      |||||||||||||||||||||||||||
seq2  ACTAATAGTTCTTTCCAAAAAGAATTC  1026