BAC Information

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BAC

Clone NameB6Ng01-159M17
Chromosome1 (Build37)
Map Location 48,998,191 - 49,120,723
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
Downstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981, EG666962
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159M17.bB6Ng01-159M17.g
ACCDH953351DH953352
length1,0721,005
definitionDH953351|Mus musculus domesticus DNA, BAC clone: B6Ng01-159M17, 5' end.DH953352|Mus musculus domesticus DNA, BAC clone: B6Ng01-159M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,119,631 - 49,120,723)(48,998,191 - 48,999,210)
sequence
gaattcttgtcacataaccaacaatacctaaaaataaagtatatgtagta
ttacaacatattttagactatagtgtactatcatacatttatataaataa
tgtaagtttttggcttatgaaacattaaaggttttttagaaccttttctc
ttaacacacagttaattttcaataaaatacattgcttaactaatagttct
caaaactatttgttagtaatactgttgctttgcttagtaataatagaaga
aaagacatttctttgttaaggtgagcaaatgaactcacataattgcaaac
tgttgttttttttttttttcattcatacagcatgcaagttaagatgttat
tgaacatttttagccatattgcactttgaaatgaaggtagtctttaccaa
cctagtagtgtcaaaattgcaagaaggcactagttatatgcaatatctaa
ttttagaggtttttgtttgtttgtttgtttttgtttttttttctggtatc
cattcctgccgttttgttttcttgttctaacccttttattactactcttt
gcccagttacttttgtcagtgtatgctctccatgtactttctgctcacta
atcagagggttgttattttttcactattagtcctaggaaacatactttgt
tattttggtactagatttgagcatccattagaattactgttgtattgatt
ttggttaaagaaaagttgtattgttatcaatatattattgtgttattttt
actcacgtgataaagattactgacactaaaagaatgcaatagaaggaaag
acatgaaaaataattctggtatggaacctgatcactttgccttcaagaag
gtatgtagtcattgaagactcagattattttcctaggtccatattgcata
tttaaaattttgtatattctcatattcttatacattgatgtagaagtcat
ctggttctttttttttttttaatcatttcttggctccagaaagaaagact
cgctgcattaattgtgaatacttgacatggtagctaggttttcttgacaa
cattaactggaatttcatttat
gaattctattaaaacctacagctagaaaaaattgggcaacctatatcaaa
tatgaagaacataaaaagacatagtaataaactttgttttgaataaaatt
agtaaatctgaatattaaaataaattgtttcttatttaactatgagattc
actctataattaattgaatatatttaactcagttctaaaatttatatata
aaataagaatagcaatatgcttaaatatcgtattgcaggaaatttctaaa
cagtttgagaaatcactcttggaaatagagagacagtttaaagtatggaa
gtcaccctacagcatttattgtagatactgaatcttttctttagattggt
aaattattaagaagatttatcaaactttcaatttttagttatcaagggag
aatatattataaaagtgtttgagaataggctgctcatatttacttggtat
atctaaatggttctagttatttaactaatacatgccttggtaaaataaac
aagagtccccagaaactttcagaaaattgactttgttatttttttagctc
ctaagatgtgttttcattgcatagaaatggaagatgctgtaattaaatat
agctttatgaaatagttcttattttctttgaatttaataagggtagtgtt
ttgaaaatgcaactgttttcacggttttacaatttatttattgctaaaac
agattcagcaataattttaaatggctcctcaaaattcttgtagaagactt
tgaaattattgatgagtattgcctattaacattcattctaatacctcaga
ttctgaaaatattattttagaatactcttgttataaagaattattcttta
atcaaaacatccatcttttctcagcagctaatgtgaaaggatccagctat
ttctaatagaataaaaactaatttcaagaattgatctggatggaaagaga
aaaattttaacagtttaaatactggcactgcctttaaaaggctcttactt
tttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49119631_49120723
seq2: B6Ng01-159M17.b_45_1116 (reverse)

seq1  ATAAATGAAATATTTCAGGTTATATGTTGTCAGGGAAGAGCCTAGCTACA  50
      ||||||||||   |||  |||| ||||||||| |  | | ||||||||| 
seq2  ATAAATGAAA---TTCCAGTTA-ATGTTGTCAAG--AAAACCTAGCTACC  44

seq1  TGGTCAAGGTATTCACAAATTTAATTGCAGCTGAGTC-TTCTTTCTGGGA  99
        ||||| ||||||||||  |||| |||||| ||||| |||||||| |||
seq2  ATGTCAA-GTATTCACAA--TTAA-TGCAGC-GAGTCTTTCTTTCT-GGA  88

seq1  GCCAAGATATGGATTAAAAAAAAAAAAAAGAACCAGAATTAACTTCTACA  149
      ||||||| || |||| |||||||||||||||||||||  | |||||||||
seq2  GCCAAGAAAT-GATT-AAAAAAAAAAAAAGAACCAGA--TGACTTCTACA  134

seq1  TCAATGTATAAAGAAATATGAAGAATTATAACAAAATTTTAAATATGCAA  199
      |||||||||||   |||||| |||| ||| ||||||||||||||||||||
seq2  TCAATGTATAA--GAATATG-AGAA-TAT-ACAAAATTTTAAATATGCAA  179

seq1  TATGGGACCTAGGAAAATAATCTGAGTCTTCAATGACTACATACCTTCTT  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAT-GGACCTAGGAAAATAATCTGAGTCTTCAATGACTACATACCTTCTT  228

seq1  GAAGGCAAAGTGATCAGGTTCCATACCAGAATTATTTTTCATGTCTTTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAAGTGATCAGGTTCCATACCAGAATTATTTTTCATGTCTTTCC  278

seq1  TTCTATTGCATTCTTTTAGTGTCAGTAATCTTTATCACGTGAGTAAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGCATTCTTTTAGTGTCAGTAATCTTTATCACGTGAGTAAAAAT  328

seq1  AACACAATAATATATTGATAACAATACAACTTTTCTTTAACCAAAATCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATAATATATTGATAACAATACAACTTTTCTTTAACCAAAATCAA  378

seq1  TACAACAGTAATTCTAATGGATGCTCAAATCTAGTACCAAAATAACAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGTAATTCTAATGGATGCTCAAATCTAGTACCAAAATAACAAAG  428

seq1  TATGTTTCCTAGGACTAATAGTGAAAAAATAACAACCCTCTGATTAGTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCCTAGGACTAATAGTGAAAAAATAACAACCCTCTGATTAGTGA  478

seq1  GCAGAAAGTACATGGAGAGCATACACTGACAAAAGTAACTGGGCAAAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGTACATGGAGAGCATACACTGACAAAAGTAACTGGGCAAAGAG  528

seq1  TAGTAATAAAAGGGTTAGAACAAGAAAACAAAACGGCAGGAATGGATACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATAAAAGGGTTAGAACAAGAAAACAAAACGGCAGGAATGGATACC  578

seq1  AGAAAAAAAAACAAAAACAAACAAACAAACAAAAACCTCTAAAATTAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAACAAAAACAAACAAACAAACAAAAACCTCTAAAATTAGAT  628

seq1  ATTGCATATAACTAGTGCCTTCTTGCAATTTTGACACTACTAGGTTGGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATATAACTAGTGCCTTCTTGCAATTTTGACACTACTAGGTTGGTA  678

seq1  AAGACTACCTTCATTTCAAAGTGCAATATGGCTAAAAATGTTCAATAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTACCTTCATTTCAAAGTGCAATATGGCTAAAAATGTTCAATAACA  728

seq1  TCTTAACTTGCATGCTGTATGAATGAAAAAAAAAAAAAACAACAGTTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTTGCATGCTGTATGAATGAAAAAAAAAAAAAACAACAGTTTGC  778

seq1  AATTATGTGAGTTCATTTGCTCACCTTAACAAAGAAATGTCTTTTCTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTGAGTTCATTTGCTCACCTTAACAAAGAAATGTCTTTTCTTCT  828

seq1  ATTATTACTAAGCAAAGCAACAGTATTACTAACAAATAGTTTTGAGAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACTAAGCAAAGCAACAGTATTACTAACAAATAGTTTTGAGAACT  878

seq1  ATTAGTTAAGCAATGTATTTTATTGAAAATTAACTGTGTGTTAAGAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTAAGCAATGTATTTTATTGAAAATTAACTGTGTGTTAAGAGAAA  928

seq1  AGGTTCTAAAAAACCTTTAATGTTTCATAAGCCAAAAACTTACATTATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTAAAAAACCTTTAATGTTTCATAAGCCAAAAACTTACATTATTT  978

seq1  ATATAAATGTATGATAGTACACTATAGTCTAAAATATGTTGTAATACTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATGTATGATAGTACACTATAGTCTAAAATATGTTGTAATACTAC  1028

seq1  ATATACTTTATTTTTAGGTATTGTTGGTTATGTGACAAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTATTTTTAGGTATTGTTGGTTATGTGACAAGAATTC  1072

seq1: chr1_48998191_48999210
seq2: B6Ng01-159M17.g_67_1071

seq1  GAATTCTATTAAAACCTACAGCTAGAAAAAATTGGGCAACCTATATCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAAAACCTACAGCTAGAAAAAATTGGGCAACCTATATCAAA  50

seq1  TATGAAGAACATAAAAAGACATAGTAATAAACTTTGTTTTGAATAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGAACATAAAAAGACATAGTAATAAACTTTGTTTTGAATAAAATT  100

seq1  AGTAAATCTGAATATTAAAATAAATTGTTTCTTATTTAACTATGAGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATCTGAATATTAAAATAAATTGTTTCTTATTTAACTATGAGATTC  150

seq1  ACTCTATAATTAATTGAATATATTTAACTCAGTTCTAAAATTTATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATAATTAATTGAATATATTTAACTCAGTTCTAAAATTTATATATA  200

seq1  AAATAAGAATAGCAATATGCTTAAATATCGTATTGCAGGAAATTTCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAATAGCAATATGCTTAAATATCGTATTGCAGGAAATTTCTAAA  250

seq1  CAGTTTGAGAAATCACTCTTGGAAATAGAGAGACAGTTTAAAGTATGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGAGAAATCACTCTTGGAAATAGAGAGACAGTTTAAAGTATGGAA  300

seq1  GTCACCCTACAGCATTTATTGTAGATACTGAATCTTTTCTTTAGATTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCTACAGCATTTATTGTAGATACTGAATCTTTTCTTTAGATTGGT  350

seq1  AAATTATTAAGAAGATTTATCAAACTTTCAATTTTTAGTTATCAAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTAAGAAGATTTATCAAACTTTCAATTTTTAGTTATCAAGGGAG  400

seq1  AATATATTATAAAAGTGTTTGAGAATAGGCTGCTCATATTTACTTGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTATAAAAGTGTTTGAGAATAGGCTGCTCATATTTACTTGGTAT  450

seq1  ATCTAAATGGTTCTAGTTATTTAACTAATACATGCCTTGGTAAAATAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATGGTTCTAGTTATTTAACTAATACATGCCTTGGTAAAATAAAC  500

seq1  AAGAGTCCCCAGAAACTTTCAGAAAATTGACTTTGTTATTTTTTTAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCCCCAGAAACTTTCAGAAAATTGACTTTGTTATTTTTTTAGCTC  550

seq1  CTAAGATGTGTTTTCATTGCATAGAAATGGAAGATGCTGTAATTAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGTGTTTTCATTGCATAGAAATGGAAGATGCTGTAATTAAATAT  600

seq1  AGCTTTATGAAATAGTTCTTATTTTCTTTGAATTTAATAAGGGTAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATGAAATAGTTCTTATTTTCTTTGAATTTAATAAGGGTAGTGTT  650

seq1  TTGAAAATGCAACTGTTTTCACGGTTTTACAATTTATTTATTGCTAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATGCAACTGTTTTCACGGTTTTACAATTTATTTATTGCTAAAAC  700

seq1  AGATTCAGCAATAATTTTAAATGGCTCCTCAAAATTCTTGTAGAAGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGCAATAATTTTAAATGGCTCCTCAAAATTCTTGTAGAAGACTT  750

seq1  TGAAATTATTGATGAGTATTGCCTATTAACATTCATTCTAATACCTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATTGATGAGTATTGCCTATTAACATTCATTCTAATACCTCAGA  800

seq1  TTCTGAAAAATATTATTTTAGAATACTCTTGTTATAAAAGAATTATTCTT  850
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTG-AAAATATTATTTTAGAATACTCTTGTTAT-AAAGAATTATTCTT  848

seq1  TAATCAAAAACATCCATCTTTTCTCAAGCAAGCTAATGTGAAAAGAATCC  900
      ||||| ||||||||||||||||||| ||| |||||||||| |||| ||||
seq2  TAATC-AAAACATCCATCTTTTCTC-AGC-AGCTAATGTG-AAAGGATCC  894

seq1  AGCTATTTCTAATAGAATAAAAACTAATTTTCAAGAAATTGGATCTGGAT  950
      ||||||||||||||||||||||||||| |||||||||  | |||||||||
seq2  AGCTATTTCTAATAGAATAAAAACTAA-TTTCAAGAA--TTGATCTGGAT  941

seq1  GGACAGAGAAAACATTTTTATACAGTTTAAAATACTGGCACTGCCTTTTA  1000
      ||| |||||||| |||||   ||||||| |||||||||||||||||||  
seq2  GGAAAGAGAAAA-ATTTT--AACAGTTT-AAATACTGGCACTGCCTTT--  985

seq1  AAAAGACTTCTACTTTTTAT  1020
      ||||| ||  ||||||||||
seq2  AAAAGGCTCTTACTTTTTAT  1005