BAC Information

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BAC

Clone NameB6Ng01-159M21
Chromosome1 (Build37)
Map Location 7,776,574 - 7,901,687
singlet/doubletdoublet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159M21.bB6Ng01-159M21.g
ACCDH953359DH953360
length9431,120
definitionDH953359|Mus musculus domesticus DNA, BAC clone: B6Ng01-159M21, 5' end.DH953360|Mus musculus domesticus DNA, BAC clone: B6Ng01-159M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,776,574 - 7,777,525)(7,900,559 - 7,901,687)
sequence
gaattcatagaaaacttgcatacattcattgtgaaaattttggtgttgtt
ttgctcttttgtatagggttatttgttcttggatcaccaaaataaaataa
tcaactatacctatataattaagcactactatatcaataaattgttttac
tttaaaaaaaaaaaaaaagaagaagtataatgatcttttgaactgtgaaa
agaactaagtctcacagtcccagacagagaaaaaggaagaaattgatgaa
cagtgctttggaaccctctaggaaaatatcaatagtaacaaatagcactt
gtgctgtcagtgttagaaggcatatacagacaggaacaatcctcaccatg
ctgctaagacacacagtccaatctgtgaaagcagaatataataaaagaac
atcctaaaagccataggcaagacataaaacctgaccaagcacaggcatat
agttaactattctgggctcctttattcaactcattattggaagtgagata
aggcagaaaaatgaaagggcataaggattgggaatgaaaacataaaacca
tttttagatgatctagttatccatgtagaaaatgttgaggaattgtcaag
agaagaagacaaagaagaaaaaagcctcagaaatccgaaaataaaaatgc
aagttgagcaaagttacagaatacagaaccaacccaggataagtctatga
aaggtaaatgtgtttctgcgcaataccagtgagcaaatagcaggatagag
aagtaatgttttgcttcttggttttgttgttgtcttgttctttttcttgg
tagtggtggtggttttttgttggtttttgttttacattgtttcatttcct
tgttaatgagttttcagacattaactttggggttttccctatactttaac
tttacggtggacgtagtagttttactaatttttagtatttgga

gaattcttcagttcttgttttctgagggaaagaattttcaatagacggca
gagagttaatcagaaatttattaagtgaagcaaagtaagtatttcagaga
tagactgcagtggtattgtcccaaatggagaagcaaagaatcacaggggg
gtaaatagtacagattttaaagaaaacctatcaattctatacatttaggc
atcgttcaaatttcacttctgttgctggtttgctttaatgaatgggctct
ttgccaggagaaacatggaagatttgggcattttaaatatttcaaagttt
gttcttctctataattctgtttcattcatccaacatgtgtaatttagaaa
gttttcagggctatatttttatttacttgatacaagcaactgattttaga
aaaggaagtttctattgataaatggcccaacaaaaatagcctctgagaag
gagaaaacaaaagtcttttagtctttcatggcattctcctgttaattgat
gactggccaggatcagtatgggtagtaccactcctgggccatactcctgt
gtgatataggagtgcaggctgagcaagctatgagggataatccaataagt
aacattcctccatggcctctactttaattcttgtttccaggttcctgcat
tgagtttttaccctgacctacctaagctgtggagtgtgagctacagaatg
taaacacacacactttactctctaagttgttttatcacagcaatagaaac
gctggctaagataaatggtgatgtggaaacctgtttcctaaagaaatgtc
ttttgctgagtcagtatgataaggacactgcttctacttcaacaagctta
gttaacttctgaaatgtttttgctttgtgctgtgtcttagtgtttctttt
gcttctaaagcaaactttgaccacagcaatgcttataaaggaaaacattt
aattggggctgccttcactttagaagtttagtgcattgtcctgtgaagga
acaatgtggcattcttacgaactgtacttagacaaggacttgaaatccca
gctcgattccccacgcagccagaaatagagatactggcctggcttgagca
ttgatatctcaaagcccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_7776574_7777525
seq2: B6Ng01-159M21.b_47_989

seq1  GAATTCATAGAAAACTTGCATACATTCATTGTGAAAATTTTGGTGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAAAACTTGCATACATTCATTGTGAAAATTTTGGTGTTGTT  50

seq1  TTGCTCTTTTGTATAGGGTTATTTGTTCTTGGATCACCAAAATAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTTGTATAGGGTTATTTGTTCTTGGATCACCAAAATAAAATAA  100

seq1  TCAACTATACCTATATAATTAAGCACTACTATATCAATAAATTGTTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTATACCTATATAATTAAGCACTACTATATCAATAAATTGTTTTAC  150

seq1  TTTAAAAAAAAAAAAAAAGAAGAAGTATAATGATCTTTTGAACTGTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAAAAAAAAAGAAGAAGTATAATGATCTTTTGAACTGTGAAA  200

seq1  AGAACTAAGTCTCACAGTCCCAGACAGAGAAAAAGGAAGAAATTGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAAGTCTCACAGTCCCAGACAGAGAAAAAGGAAGAAATTGATGAA  250

seq1  CAGTGCTTTGGAACCCTCTAGGAAAATATCAATAGTAACAAATAGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTGGAACCCTCTAGGAAAATATCAATAGTAACAAATAGCACTT  300

seq1  GTGCTGTCAGTGTTAGAAGGCATATACAGACAGGAACAATCCTCACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCAGTGTTAGAAGGCATATACAGACAGGAACAATCCTCACCATG  350

seq1  CTGCTAAGACACACAGTCCAATCTGTGAAAGCAGAATATAATAAAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGACACACAGTCCAATCTGTGAAAGCAGAATATAATAAAAGAAC  400

seq1  ATCCTAAAAGCCATAGGCAAGACATAAAACCTGACCAAGCACAGGCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAAAGCCATAGGCAAGACATAAAACCTGACCAAGCACAGGCATAT  450

seq1  AGTTAACTATTCTGGGCTCCTTTATTCAACTCATTATTGGAAGTGAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTATTCTGGGCTCCTTTATTCAACTCATTATTGGAAGTGAGATA  500

seq1  AGGCAGAAAAATGAAAGGGCATAAGGATTGGGAATGAAAACATAAAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAAAATGAAAGGGCATAAGGATTGGGAATGAAAACATAAAACCA  550

seq1  TTTTTAGATGATCTAGTTATCCATGTAGAAAATGTTGAGGAATTGTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGATGATCTAGTTATCCATGTAGAAAATGTTGAGGAATTGTCAAG  600

seq1  AGAAGAAGACAAAGAAGAAAAAAGCCTCAGAAATCCGAAAATAAAAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGACAAAGAAGAAAAAAGCCTCAGAAATCCGAAAATAAAAATGC  650

seq1  AAGTTGAGCAAAGTTACAGAATACAGAACCAACCCAGGATAAGTCTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGCAAAGTTACAGAATACAGAACCAACCCAGGATAAGTCTATGA  700

seq1  AAGGTAAATGTGTTTCTGCGCAATACCAGTGAGCAAATAGCAGGATAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAATGTGTTTCTGCGCAATACCAGTGAGCAAATAGCAGGATAGAG  750

seq1  AAGTAATGTTTTGCTTCTTGGTTTTGTTGTTGTCTTGTTCTTTTTCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGTTTTGCTTCTTGGTTTTGTTGTTGTCTTGTTCTTTTTCTTGG  800

seq1  TAGTGGTGGTGGTTTTTTGTTTGGTTTTTGTTTTTGCATTGTTTCATTTT  850
      ||||||||||||||||||| |||||||||| |||| |||||||||| |||
seq2  TAGTGGTGGTGGTTTTTTG-TTGGTTTTTG-TTTTACATTGTTTCA-TTT  847

seq1  CCTTGTTTAATGTGTTTTCAGACATTAAACATTTGGGGTTTTCCCTATAC  900
      ||||| |||||| |||||||||||||||   |||||||||||||||||||
seq2  CCTTG-TTAATGAGTTTTCAGACATTAA--CTTTGGGGTTTTCCCTATAC  894

seq1  TTTTAACCTTTACAGTGGACGTAATAGTTTTACTAATTTTTATATATTTG  950
      |||  | |||||| ||||||||| ||||||||||||||||||  ||||||
seq2  TTT--AACTTTACGGTGGACGTAGTAGTTTTACTAATTTTTA-GTATTTG  941

seq1  GA  952
      ||
seq2  GA  943


seq1: chr1_7900559_7901687
seq2: B6Ng01-159M21.g_70_1189 (reverse)

seq1  GGTGGGCTTTGAGGATTCAAATGCTCAAGCCAGGCCCAGTATCTCTATTT  50
      |||||||||||| |||   ||||||||||||||| |||||||||||||||
seq2  GGTGGGCTTTGA-GATATCAATGCTCAAGCCAGG-CCAGTATCTCTATTT  48

seq1  CT-GCTGCTGGTGGAATCAGACTTGGAATTCTCAGTTACTTGTCT-AGTA  98
      || |||||  | |||||| ||  ||| ||| |||  | ||||||| ||||
seq2  CTGGCTGCGTGGGGAATC-GAGCTGGGATT-TCAAGTCCTTGTCTAAGTA  96

seq1  CTATGTCTGTATGAATGCCACCATGTTTCCCTTCACAGTGACAATGCACT  148
      |   ||  ||| |||||||||  ||||  ||||||||| |||||||||||
seq2  C--AGTTCGTAAGAATGCCACATTGTT--CCTTCACAG-GACAATGCACT  141

seq1  AAACTTCTTAAGTGTAAGCCAGCCCCCAATTAAATGTTTTCCTTTATAAG  198
      |||||||| ||||| ||| ||| |||||||||||||||||||||||||||
seq2  AAACTTCTAAAGTG-AAGGCAG-CCCCAATTAAATGTTTTCCTTTATAAG  189

seq1  CATTGCTGTGGTCATAGTTTTGCTTTAG-AGCAAAAGAAACACTAAGACA  247
      |||||||||||||| || |||||||||| |||||||||||||||||||||
seq2  CATTGCTGTGGTCAAAG-TTTGCTTTAGAAGCAAAAGAAACACTAAGACA  238

seq1  CAGCACAAAGCAAAAACATTTCAGAAGTTAACTAAGCTTGTTGAAGTAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAAGCAAAAACATTTCAGAAGTTAACTAAGCTTGTTGAAGTAGA  288

seq1  AGCAGTGTCCTTATCATACTGACTCAGCAAAAGACATTTCTTTAGGAAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTCCTTATCATACTGACTCAGCAAAAGACATTTCTTTAGGAAAC  338

seq1  AGGTTTCCACATCACCATTTATCTTAGCCAGCGTTTCTATTGCTGTGATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCACATCACCATTTATCTTAGCCAGCGTTTCTATTGCTGTGATA  388

seq1  AAACAACTTAGAGAGTAAAGTGTGTGTGTTTACATTCTGTAGCTCACACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTTAGAGAGTAAAGTGTGTGTGTTTACATTCTGTAGCTCACACT  438

seq1  CCACAGCTTAGGTAGGTCAGGGTAAAAACTCAATGCAGGAACCTGGAAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTTAGGTAGGTCAGGGTAAAAACTCAATGCAGGAACCTGGAAAC  488

seq1  AAGAATTAAAGTAGAGGCCATGGAGGAATGTTACTTATTGGATTATCCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAAAGTAGAGGCCATGGAGGAATGTTACTTATTGGATTATCCCT  538

seq1  CATAGCTTGCTCAGCCTGCACTCCTATATCACACAGGAGTATGGCCCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTTGCTCAGCCTGCACTCCTATATCACACAGGAGTATGGCCCAGG  588

seq1  AGTGGTACTACCCATACTGATCCTGGCCAGTCATCAATTAACAGGAGAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTACTACCCATACTGATCCTGGCCAGTCATCAATTAACAGGAGAAT  638

seq1  GCCATGAAAGACTAAAAGACTTTTGTTTTCTCCTTCTCAGAGGCTATTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAAAGACTAAAAGACTTTTGTTTTCTCCTTCTCAGAGGCTATTTT  688

seq1  TGTTGGGCCATTTATCAATAGAAACTTCCTTTTCTAAAATCAGTTGCTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCCATTTATCAATAGAAACTTCCTTTTCTAAAATCAGTTGCTTG  738

seq1  TATCAAGTAAATAAAAATATAGCCCTGAAAACTTTCTAAATTACACATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTAAATAAAAATATAGCCCTGAAAACTTTCTAAATTACACATGT  788

seq1  TGGATGAATGAAACAGAATTATAGAGAAGAACAAACTTTGAAATATTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAATGAAACAGAATTATAGAGAAGAACAAACTTTGAAATATTTAA  838

seq1  AATGCCCAAATCTTCCATGTTTCTCCTGGCAAAGAGCCCATTCATTAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCAAATCTTCCATGTTTCTCCTGGCAAAGAGCCCATTCATTAAAG  888

seq1  CAAACCAGCAACAGAAGTGAAATTTGAACGATGCCTAAATGTATAGAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGCAACAGAAGTGAAATTTGAACGATGCCTAAATGTATAGAATT  938

seq1  GATAGGTTTTCTTTAAAATCTGTACTATTTACCCCCCTGTGATTCTTTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTTTTCTTTAAAATCTGTACTATTTACCCCCCTGTGATTCTTTGC  988

seq1  TTCTCCATTTGGGACAATACCACTGCAGTCTATCTCTGAAATACTTACTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATTTGGGACAATACCACTGCAGTCTATCTCTGAAATACTTACTT  1038

seq1  TGCTTCACTTAATAAATTTCTGATTAACTCTCTGCCGTCTATTGAAAATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACTTAATAAATTTCTGATTAACTCTCTGCCGTCTATTGAAAATT  1088

seq1  CTTTCCCTCAGAAAACAAGAACTGAAGAATTC  1129
      ||||||||||||||||||||||||||||||||
seq2  CTTTCCCTCAGAAAACAAGAACTGAAGAATTC  1120


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