BAC Information

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BAC

Clone NameB6Ng01-159O24
Chromosome1 (Build37)
Map Location 40,580,808 - 40,683,607
singlet/doubletdoublet
Overlap geneIl18rap, Slc9a4
Upstream geneD1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1
Downstream geneSlc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159O24.bB6Ng01-159O24.g
ACCDH953454DH953455
length1,0941,132
definitionDH953454|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O24, 5' end.DH953455|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,682,496 - 40,683,607)(40,580,808 - 40,581,945)
sequence
gaattcacaggcattctgtcaggagcatttggatcgtggcgggccttaag
agagccaggaagagaagtgttttttgtagactcagtttggttggccagag
actacacagttgagggaagcatgacacccaaattatcctaactagagtgt
cccttttcttctttccctctgagagcagttgttctcaaatgatcaaaccc
ttagccacacattgaggactctctgcatttcatcctgattgctaccatac
tcctttttgggacagaggggtgctatatttgtttgtttgtttgtttgtta
tttgttgttgcatatattttgatatatattttaaaataataattaaccaa
ctccaatttggctgcccatatatttctggctgtagggccatctactagag
tatagttgatctaatttaaagaaaattacctcttcctcccccagaaacca
tcaactgtctatagtttatcagttggggtgggggtcatgtactcctcact
ctatgctaaaaggcttggtcttgtgcaggcagccacagcttcaggggatt
catgagttttagtcaccctcttcctttggtagggtcctccaaccgatagt
gtctcattcatatttttggttggggagcagatggtggtatgagacagggg
gatctataatggtctatgggaaagagtggggaaaatattatcaaaataca
ctgcatgaagtttataaagaattgataaaatattataaccagataactgt
tagagtcctttcactgattaaatcgaatgaatacataaaacaatttctac
cttctagaataaagcagactcctccttaaggtttagtatttagagtaacc
atttggctgtttactataatgcttacttacttttgtatctcccgccccag
aacctgctaggctgccccatgccagagtcctgcagtatgatgatcaccca
gaaaatagctgtggtgctcgctgttttttttcaccttaatgacgagatag
acttgagtattagaataagaaatatattctaaaccaaatgttgtgccttg
tgttatggtcatcttctaccttccttacttctttggggaactcc
gaattccatgaagagaaatgttcagaagataccccagggcccctgtaatg
tcctcaggggaccctggatctgagatatgcatcctttgtatgtgctagag
atgacacacggaagaacccgtttcatgcctctgaaaatacccacacagac
tctgggcttctgaaggctatttgggtgggatgtgctctttcagagtttcc
tgtgtgacttgaagcttggccacaggttttgattcctccatttcctactt
tagaagtgaagaggatgccagagaaagaggtttgcctctctgcactctcc
acactggcgatcagaagtagctgaagccatgacaggagcaaaggggaacc
atgctctgtttgggctgggtgtttctttggtttgttgcaggagagaagac
cacaggatttaatcattcaggtatgggttttcttctgcatattaacaccg
caagtcttgtggtcaaaatctgaactgacagatgatctagtagtacacag
catcttgtcactgtcaaaagagggaagaggagagctctgggccagggctg
ctttcagcagatgacatacccctggggaatctcagtgaccacagctgggc
gctcactggggacatctaaaaaggagtagatgattctactactcatagca
aattaagacaagcccattgagaggtgaccagaacatgaaccattttcatc
tatgaaatggacatagtacacacagaatacagagcttagtcatttgttat
attgagtctattcataatataataggaattccgccttctaatgtgtttct
ctgtgttgtttcatttgctgtaattttcagcttgtgccaccaaaaaactt
ctgtggacatttttcttgcaaggggtgcaggagaattttgtcctattttt
gtgacttacagagcttcaggagcaaaattctcccatgcaagtcactgtca
caacacaaagtcctgctcacaaacttgcagtggcagtcagaggacctatc
tgattgttcagtgtacatgcacttcgggagtgtagtcactagagggaaga
tcagtagaactcttccatattgcagatgaagcatgctcgcatatattggc
cccaggaccgaacagcatttggcttatatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40682496_40683607
seq2: B6Ng01-159O24.b_49_1142 (reverse)

seq1  GGAGTTTCACAAAGAAAAGTAAAGGAAGTTAAGAAGATAGACATAAACAC  50
      |||||| | |||||  |||| ||||||| | ||||||| |||   |||||
seq2  GGAGTTCCCCAAAG--AAGT-AAGGAAGGT-AGAAGAT-GACCATAACAC  45

seq1  AAGGCACAAAACATATTGGTTTTAGAATATATTTCTTATTCTAATAACTC  100
      |||||||  ||||| |||| ||||||||||||||||||||||||| ||||
seq2  AAGGCAC--AACAT-TTGG-TTTAGAATATATTTCTTATTCTAAT-ACTC  90

seq1  AAGTCTAATCTCGTCATTTAAGTGAAGAGAAAACAAGCGAGCACCACAGC  150
      |||||| ||||||||||| | ||||| | ||||| |||||||||||||||
seq2  AAGTCT-ATCTCGTCATTAAGGTGAA-AAAAAAC-AGCGAGCACCACAGC  137

seq1  TATTTTCTGGGGTGATCATCAATACTGCAGGACTCTGGCATGGGGGCAGC  200
      |||||||| ||||||||||| |||||||||||||||||||| ||||||||
seq2  TATTTTCT-GGGTGATCATC-ATACTGCAGGACTCTGGCAT-GGGGCAGC  184

seq1  CTAGCAGGTTCTTGGGGCGGGGAGATACAAAAGTAAGTAAGCATTATAGT  250
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  CTAGCAGGTTC-TGGGGC-GGGAGATACAAAAGTAAGTAAGCATTATAGT  232

seq1  AAACAGCCAAATGGTTACTCTAAATACTAAACCTTAAGGAGGAGTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCCAAATGGTTACTCTAAATACTAAACCTTAAGGAGGAGTCTGCT  282

seq1  TTATTCTAGAAGGTAGAAATTGTTTTATGTATTCATTCGATTTAATCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAGAAGGTAGAAATTGTTTTATGTATTCATTCGATTTAATCAGT  332

seq1  GAAAGGACTCTAACAGTTATCTGGTTATAATATTTTATCAATTCTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACTCTAACAGTTATCTGGTTATAATATTTTATCAATTCTTTATA  382

seq1  AACTTCATGCAGTGTATTTTGATAATATTTTCCCCACTCTTTCCCATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATGCAGTGTATTTTGATAATATTTTCCCCACTCTTTCCCATAGA  432

seq1  CCATTATAGATCCCCCTGTCTCATACCACCATCTGCTCCCCAACCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATAGATCCCCCTGTCTCATACCACCATCTGCTCCCCAACCAAAAA  482

seq1  TATGAATGAGACACTATCGGTTGGAGGACCCTACCAAAGGAAGAGGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGAGACACTATCGGTTGGAGGACCCTACCAAAGGAAGAGGGTGA  532

seq1  CTAAAACTCATGAATCCCCTGAAGCTGTGGCTGCCTGCACAAGACCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTCATGAATCCCCTGAAGCTGTGGCTGCCTGCACAAGACCAAGC  582

seq1  CTTTTAGCATAGAGTGAGGAGTACATGACCCCCACCCCAACTGATAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCATAGAGTGAGGAGTACATGACCCCCACCCCAACTGATAAACT  632

seq1  ATAGACAGTTGATGGTTTCTGGGGGAGGAAGAGGTAATTTTCTTTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGTTGATGGTTTCTGGGGGAGGAAGAGGTAATTTTCTTTAAATT  682

seq1  AGATCAACTATACTCTAGTAGATGGCCCTACAGCCAGAAATATATGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAACTATACTCTAGTAGATGGCCCTACAGCCAGAAATATATGGGCA  732

seq1  GCCAAATTGGAGTTGGTTAATTATTATTTTAAAATATATATCAAAATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATTGGAGTTGGTTAATTATTATTTTAAAATATATATCAAAATATA  782

seq1  TGCAACAACAAATAACAAACAAACAAACAAACAAATATAGCACCCCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAACAAATAACAAACAAACAAACAAACAAATATAGCACCCCTCTG  832

seq1  TCCCAAAAAGGAGTATGGTAGCAATCAGGATGAAATGCAGAGAGTCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAAGGAGTATGGTAGCAATCAGGATGAAATGCAGAGAGTCCTCA  882

seq1  ATGTGTGGCTAAGGGTTTGATCATTTGAGAACAACTGCTCTCAGAGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGCTAAGGGTTTGATCATTTGAGAACAACTGCTCTCAGAGGGAA  932

seq1  AGAAGAAAAGGGACACTCTAGTTAGGATAATTTGGGTGTCATGCTTCCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAGGGACACTCTAGTTAGGATAATTTGGGTGTCATGCTTCCCT  982

seq1  CAACTGTGTAGTCTCTGGCCAACCAAACTGAGTCTACAAAAAACACTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGTAGTCTCTGGCCAACCAAACTGAGTCTACAAAAAACACTTCT  1032

seq1  CTTCCTGGCTCTCTTAAGGCCCGCCACGATCCAAATGCTCCTGACAGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGCTCTCTTAAGGCCCGCCACGATCCAAATGCTCCTGACAGAAT  1082

seq1  GCCTGTGAATTC  1112
      ||||||||||||
seq2  GCCTGTGAATTC  1094

seq1: chr1_40580808_40581945
seq2: B6Ng01-159O24.g_71_1202

seq1  GAATTCCATGAAGAGAAATGTTCAGAAGATACCCCAGGGCCCCTGTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAGAGAAATGTTCAGAAGATACCCCAGGGCCCCTGTAATG  50

seq1  TCCTCAGGGGACCCTGGATCTGAGATATGCATCCTTTGTATGTGCTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGGGACCCTGGATCTGAGATATGCATCCTTTGTATGTGCTAGAG  100

seq1  ATGACACACGGAAGAACCCGTTTCATGCCTCTGAAAATACCCACACAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACACGGAAGAACCCGTTTCATGCCTCTGAAAATACCCACACAGAC  150

seq1  TCTGGGCTTCTGAAGGCTATTTGGGTGGGATGTGCTCTTTCAGAGTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTTCTGAAGGCTATTTGGGTGGGATGTGCTCTTTCAGAGTTTCC  200

seq1  TGTGTGACTTGAAGCTTGGCCACAGGTTTTGATTCCTCCATTTCCTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACTTGAAGCTTGGCCACAGGTTTTGATTCCTCCATTTCCTACTT  250

seq1  TAGAAGTGAAGAGGATGCCAGAGAAAGAGGTTTGCCTCTCTGCACTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGAAGAGGATGCCAGAGAAAGAGGTTTGCCTCTCTGCACTCTCC  300

seq1  ACACTGGCGATCAGAAGTAGCTGAAGCCATGACAGGAGCAAAGGGGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCGATCAGAAGTAGCTGAAGCCATGACAGGAGCAAAGGGGAACC  350

seq1  ATGCTCTGTTTGGGCTGGGTGTTTCTTTGGTTTGTTGCAGGAGAGAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGTTTGGGCTGGGTGTTTCTTTGGTTTGTTGCAGGAGAGAAGAC  400

seq1  CACAGGATTTAATCATTCAGGTATGGGTTTTCTTCTGCATATTAACACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATTTAATCATTCAGGTATGGGTTTTCTTCTGCATATTAACACCG  450

seq1  CAAGTCTTGTGGTCAAAATCTGAACTGACAGATGATCTAGTAGTACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTGTGGTCAAAATCTGAACTGACAGATGATCTAGTAGTACACAG  500

seq1  CATCTTGTCACTGTCAAAAGAGGGAAGAGGAGAGCTCTGGGCCAGGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTCACTGTCAAAAGAGGGAAGAGGAGAGCTCTGGGCCAGGGCTG  550

seq1  CTTTCAGCAGATGACATACCCCTGGGGAATCTCAGTGACCACAGCTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCAGATGACATACCCCTGGGGAATCTCAGTGACCACAGCTGGGC  600

seq1  GCTCACTGGGGACATCTAAAAAGGAGTAGATGATTCTACTACTCATAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGGGGACATCTAAAAAGGAGTAGATGATTCTACTACTCATAGCA  650

seq1  AATTAAGACAAGCCCATTGAGAGGTGACCAGAACATGAACCATTTTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGACAAGCCCATTGAGAGGTGACCAGAACATGAACCATTTTCATC  700

seq1  TATGAAATGGACATAGTACACACAGAATACAGAGCTTAGTCATTTGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATGGACATAGTACACACAGAATACAGAGCTTAGTCATTTGTTAT  750

seq1  ATTGAGTCTATTCATAATATAAATAGGAATTCCGCCTTCTAATGTGTTTC  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTGAGTCTATTCATAATAT-AATAGGAATTCCGCCTTCTAATGTGTTTC  799

seq1  TCTGTGTTGTTTCATTTGCTGTAATTTTCAGCTTGTGCCACCAAAAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTGTTTCATTTGCTGTAATTTTCAGCTTGTGCCACCAAAAAACT  849

seq1  TCTGTGGACATATT--CTGCAAGGGGTGCA-GAGAATTTTGTCCTA-TTT  896
      ||||||||||| ||   ||||||||||||| ||||||||||||||| |||
seq2  TCTGTGGACATTTTTCTTGCAAGGGGTGCAGGAGAATTTTGTCCTATTTT  899

seq1  TGTGACTTACAAGAGCTTCAGGAGCAAAAATTCTCCCATGCAAGTCAACT  946
      |||||||||| |||||||||||||| |||||||||||||||||||| |||
seq2  TGTGACTTAC-AGAGCTTCAGGAGC-AAAATTCTCCCATGCAAGTC-ACT  946

seq1  GTCACCAACACAAAGTCCTGCTCACAAACCTTGCAGTGGCAGTCAGAAGG  996
      |||| ||||||||||||||||||||||| ||||||||||||||||| |||
seq2  GTCA-CAACACAAAGTCCTGCTCACAAA-CTTGCAGTGGCAGTCAG-AGG  993

seq1  ACCTATCTGA-TGTCCAGTGGTACATGCAACCTC-GGAGTGGAAGTCCAC  1044
      |||||||||| ||| |||| |||||||| || || ||||| | ||| |||
seq2  ACCTATCTGATTGTTCAGT-GTACATGC-ACTTCGGGAGT-GTAGT-CAC  1039

seq1  TAGAGG--AGATCAGTAGAAACTCTCCCCATA-TGCAGAGTGAAGGCATG  1091
      ||||||  |||||||||| ||||||  ||||| |||||| |||| |||||
seq2  TAGAGGGAAGATCAGTAG-AACTCT-TCCATATTGCAGA-TGAA-GCATG  1085

seq1  CT-GCATATATTGGCCCCACAGACGAACAGCATTTGGTCATATATTTG  1138
      || ||||||||||||||||    |||||||||||||| | ||||||||
seq2  CTCGCATATATTGGCCCCAGGACCGAACAGCATTTGG-CTTATATTTG  1132