BAC Information

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BAC

Clone NameB6Ng01-160A15
Chromosome1 (Build37)
Map Location 51,282,759 - 51,425,331
singlet/doubletdoublet
Overlap geneSdpr, LOC383504
Upstream geneLOC100041993, Tmeff2
Downstream geneObfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160A15.bB6Ng01-160A15.g
ACCDH953524DH953525
length1,017974
definitionDH953524|Mus musculus domesticus DNA, BAC clone: B6Ng01-160A15, 5' end.DH953525|Mus musculus domesticus DNA, BAC clone: B6Ng01-160A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,424,281 - 51,425,331)(51,282,759 - 51,283,735)
sequence
gaattcactgtgcagagtaccctgggccctttgggaggtggtagggagag
atggctcagagggccatggctatagccctgcaagcttaacaacctgagtt
caacacctcagagtccatgtacaaagccagatgtggtggcatccttgcat
tacttgtttgtgatacaagtactcctacggtgagatggcaggcaggcaaa
agggagtcttttctggaagctcgctggctggttacagagacactgtctca
gcaagactgactgctgaaagtttcctgtgacttccagcattgggaacaag
cagaaggaacttatactaagtaccgctatttcattttcagactccattta
atcagaaggagaatgattaattcaaggtctcaggccctaggggaactggg
acctttcccatagctgaacagcttcagtggtgagcagttgtctgagtcca
gccatctcgaggacaacttctccatcttgtcagcagcgttaaacaaattc
atgttcttaggcctaggaacaaacacttatcctacttctccaagagcttt
ttttttttccttttattttttggtgagtacaatgtcactgtcctcataca
caccagaagagggcatcagacccatgacagatggttgtgaggcaccatgt
ggttgctgggaattgaattcactggcctctggaagattagtcagcgtctg
agccagatctccaatgggcggtcccttgtttaaccataaagccaaaatat
aattagataacattgaagctcacctcagtgcacccctcgccttgtgttcc
catccttcaaaaatgtacaggctccctttgggaatgagttcagaccctga
actggctgcctccctgagcactcagaaaatagacctttcattttagcttc
acgtctcagtgagtgtttttttttttttttttgtttttgttatttgctca
cctgacccacaccaatgtgctctgtgcatgacctcttttcttctctctcc
cacttttcttcctccct
gaattcaatagtcttctactttcacatttccctaccatcaacttcttggc
tgtagaagcgttccaatctggagcctgtcggatgctaggcaggagttctg
ccactgagctccatcaccagccctttttacaggttttcttttgagactac
atcttgacaagttttccaggctcccctggaacttctgatcctccttatat
cagtttccttagtagctgggattatagacctgtgacaggaagccacatgt
cctcaaactgctgtaagggaaatggatggaatttttatttagatggaagg
tggctccctactttttgacttggaggagttgggacagtaatgggagtggt
gatacaaattgtatgatagagaagagggctagatggagcaggtgggagtt
tatttagcagagttcacgggtgaataacaggcatgcaccacaatctaaga
agaattgatgggcaggaaatggagaaatgagattgctcactataaacaag
cataagataatgttacttttcattttaaaatggctgacatacaacaacag
ggaggagagacagagtagatgaacagcaatgcaaactattggactctatt
ttagggaaagtgacagagaaaaaaaaatgttcaagagcccaaggttccat
acatttcatggtatctgactatagaatgtcatatgacttctccagatatt
acctatttattcattagaataaatgcacagctgattactagaaggctatg
ttgggagtatgggggacataattatagtgaaggaatggtgtcctgtgctg
gagtcaaagcacgatcagagtgaggaactgccatgtgacacacagtgaaa
atggaaagtttcgcacatggaaacttcagagaaccaggagctgaaacaag
accccttgccatttgcgatctcctgggacagatctgtttttcccttaata
tgagcaaacattcttgggagcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51424281_51425331
seq2: B6Ng01-160A15.b_48_1064 (reverse)

seq1  AGGGAGGGAAAGAAAAAGTGGGAGAGAGAAGAAAAAGAGGTTCATGCCAC  50
      |||||||  ||| |||||||||||||||||| |||||||| ||||| |||
seq2  AGGGAGG--AAG-AAAAGTGGGAGAGAGAAG-AAAAGAGG-TCATG-CAC  44

seq1  AGAGCACATTTGGTGTTGGGTTCAGGTTGGAAGCCAAAAAAAAAAAAAAA  100
      |||||||| |||||||  || ||||||    |||            ||| 
seq2  AGAGCACA-TTGGTGT--GGGTCAGGT---GAGC------------AAAT  76

seq1  AAAAAAAACCAAAAAAAAAAAAAAAAAAAACAACTCACTTGAGACGTGGA  150
      || ||||||    |||||||||||||||||| |||||| |||||||| ||
seq2  AACAAAAAC----AAAAAAAAAAAAAAAAAC-ACTCAC-TGAGACGT-GA  119

seq1  AGCTTAAAATTGAAAGGTCTATTTTCTGAGTGCTCAGGGAGGCAGCCAGT  200
      ||||  ||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCT--AAAATGAAAGGTCTATTTTCTGAGTGCTCAGGGAGGCAGCCAGT  167

seq1  TCAGGGTCTGAACCTCATTCCCAAAGGGAGCCTGTACATTTTTGAAGGAT  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCTGAA-CTCATTCCCAAAGGGAGCCTGTACATTTTTGAAGGAT  216

seq1  GGGAACACAAGGCGAGGGGTGCACTGAGGTGAGCTTCAATGTTATCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACACAAGGCGAGGGGTGCACTGAGGTGAGCTTCAATGTTATCTAAT  266

seq1  TATATTTTGGCTTTATGGTTAAACAAGGGACCGCCCATTGGAGATCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGGCTTTATGGTTAAACAAGGGACCGCCCATTGGAGATCTGGC  316

seq1  TCAGACGCTGACTAATCTTCCAGAGGCCAGTGAATTCAATTCCCAGCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGCTGACTAATCTTCCAGAGGCCAGTGAATTCAATTCCCAGCAAC  366

seq1  CACATGGTGCCTCACAACCATCTGTCATGGGTCTGATGCCCTCTTCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGCCTCACAACCATCTGTCATGGGTCTGATGCCCTCTTCTGGT  416

seq1  GTGTATGAGGACAGTGACATTGTACTCACCAAAAAATAAAAGGAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGAGGACAGTGACATTGTACTCACCAAAAAATAAAAGGAAAAAAA  466

seq1  AAAAGCTCTTGGAGAAGTAGGATAAGTGTTTGTTCCTAGGCCTAAGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCTTGGAGAAGTAGGATAAGTGTTTGTTCCTAGGCCTAAGAACA  516

seq1  TGAATTTGTTTAACGCTGCTGACAAGATGGAGAAGTTGTCCTCGAGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGTTTAACGCTGCTGACAAGATGGAGAAGTTGTCCTCGAGATGG  566

seq1  CTGGACTCAGACAACTGCTCACCACTGAAGCTGTTCAGCTATGGGAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCAGACAACTGCTCACCACTGAAGCTGTTCAGCTATGGGAAAGG  616

seq1  TCCCAGTTCCCCTAGGGCCTGAGACCTTGAATTAATCATTCTCCTTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTCCCCTAGGGCCTGAGACCTTGAATTAATCATTCTCCTTCTGA  666

seq1  TTAAATGGAGTCTGAAAATGAAATAGCGGTACTTAGTATAAGTTCCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGAGTCTGAAAATGAAATAGCGGTACTTAGTATAAGTTCCTTCT  716

seq1  GCTTGTTCCCAATGCTGGAAGTCACAGGAAACTTTCAGCAGTCAGTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCCCAATGCTGGAAGTCACAGGAAACTTTCAGCAGTCAGTCTTG  766

seq1  CTGAGACAGTGTCTCTGTAACCAGCCAGCGAGCTTCCAGAAAAGACTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAGTGTCTCTGTAACCAGCCAGCGAGCTTCCAGAAAAGACTCCC  816

seq1  TTTTGCCTGCCTGCCATCTCACCGTAGGAGTACTTGTATCACAAACAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTGCCTGCCATCTCACCGTAGGAGTACTTGTATCACAAACAAGT  866

seq1  AATGCAAGGATGCCACCACATCTGGCTTTGTACATGGACTCTGAGGTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGGATGCCACCACATCTGGCTTTGTACATGGACTCTGAGGTGTT  916

seq1  GAACTCAGGTTGTTAAGCTTGCAGGGCTATAGCCATGGCCCTCTGAGCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGTTGTTAAGCTTGCAGGGCTATAGCCATGGCCCTCTGAGCCA  966

seq1  TCTCTCCCTACCACCTCCCAAAGGGCCCAGGGTACTCTGCACAGTGAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTACCACCTCCCAAAGGGCCCAGGGTACTCTGCACAGTGAATT  1016

seq1  C  1051
      |
seq2  C  1017

seq1: chr1_51282759_51283735
seq2: B6Ng01-160A15.g_67_1040

seq1  GAATTCAATAGTCTTCTACTTTCACATTTCCCTACCATCAACTTCTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTCTTCTACTTTCACATTTCCCTACCATCAACTTCTTGGC  50

seq1  TGTAGAAGCGTTCCAATCTGGAGCCTGTCGGATGCTAGGCAGGAGTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGCGTTCCAATCTGGAGCCTGTCGGATGCTAGGCAGGAGTTCTG  100

seq1  CCACTGAGCTCCATCACCAGCCCTTTTTACAGGTTTTCTTTTGAGACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCTCCATCACCAGCCCTTTTTACAGGTTTTCTTTTGAGACTAC  150

seq1  ATCTTGACAAGTTTTCCAGGCTCCCCTGGAACTTCTGATCCTCCTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGACAAGTTTTCCAGGCTCCCCTGGAACTTCTGATCCTCCTTATAT  200

seq1  CAGTTTCCTTAGTAGCTGGGATTATAGACCTGTGACAGGAAGCCACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTTAGTAGCTGGGATTATAGACCTGTGACAGGAAGCCACATGT  250

seq1  CCTCAAACTGCTGTAAGGGAAATGGATGGAATTTTTATTTAGATGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTGCTGTAAGGGAAATGGATGGAATTTTTATTTAGATGGAAGG  300

seq1  TGGCTCCCTACTTTTTGACTTGGAGGAGTTGGGACAGTAATGGGAGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCTACTTTTTGACTTGGAGGAGTTGGGACAGTAATGGGAGTGGT  350

seq1  GATACAAATTGTATGATAGAGAAGAGGGCTAGATGGAGCAGGTGGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAATTGTATGATAGAGAAGAGGGCTAGATGGAGCAGGTGGGAGTT  400

seq1  TATTTAGCAGAGTTCACGGGTGAATAACAGGCATGCACCACAATCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGCAGAGTTCACGGGTGAATAACAGGCATGCACCACAATCTAAGA  450

seq1  AGAATTGATGGGCAGGAAATGGAGAAATGAGATTGCTCACTATAAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGATGGGCAGGAAATGGAGAAATGAGATTGCTCACTATAAACAAG  500

seq1  CATAAGATAATGTTACTTTTCATTTTAAAATGGCTGACATACAACAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGATAATGTTACTTTTCATTTTAAAATGGCTGACATACAACAACAG  550

seq1  GGAGGAGAGACAGAGTAGATGAACAGCAATGCAAACTATTGGACTCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGACAGAGTAGATGAACAGCAATGCAAACTATTGGACTCTATT  600

seq1  TTAGGGAAAGTGACAGAGAAAAAAAAATGTTCAAGAGCCCAAGGTTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAAGTGACAGAGAAAAAAAAATGTTCAAGAGCCCAAGGTTCCAT  650

seq1  ACATTTCATGGTATCTGACTATAGAATGTCATATGACTTCTCCAGATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCATGGTATCTGACTATAGAATGTCATATGACTTCTCCAGATATT  700

seq1  ACCTATTTATTCATTAGAATAAATGCACAGCTGATTACTAGAAGGCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTATTCATTAGAATAAATGCACAGCTGATTACTAGAAGGCTATG  750

seq1  TTGGGAGTATGGGGGACATAATTATAGTGAAGGAATGGTGTCCTGTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTATGGGGGACATAATTATAGTGAAGGAATGGTGTCCTGTGCTG  800

seq1  GAGTCAAAGCACGATCAGAGTGAGGAACTGCCATGTGACACAACAGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGTCAAAGCACGATCAGAGTGAGGAACTGCCATGTGACAC-ACAGTGAA  849

seq1  AATGGAAAGTTTGGCACATGGAAACTCCAGAGAACCAGGAGCTGAAACAA  900
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  AATGGAAAGTTTCGCACATGGAAACTTCAGAGAACCAGGAGCTGAAACAA  899

seq1  GACCCCTGGCCATTTGCGAATCTCCTGGGACAAGATCTGTATTTCCCTTA  950
      ||||||| |||||||||| |||||||||||| |||||||| |||||||||
seq2  GACCCCTTGCCATTTGCG-ATCTCCTGGGAC-AGATCTGTTTTTCCCTTA  947

seq1  ATATGAGCAAACATTCTTGGGAGCAGC  977
      |||||||||||||||||||||||||||
seq2  ATATGAGCAAACATTCTTGGGAGCAGC  974