BAC Information

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BAC

Clone NameB6Ng01-160B17
Chromosome1 (Build37)
Map Location 189,717,825 - 189,903,359
singlet/doubletdoublet
Overlap geneEsrrg, 9330162B11Rik
Upstream geneLOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneUsh2a, Kctd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160B17.bB6Ng01-160B17.g
ACCDH953570DH953571
length9411,089
definitionDH953570|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B17, 5' end.DH953571|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,717,825 - 189,718,768)(189,902,242 - 189,903,359)
sequence
gaattccacggccattctaataaatgatttttatttactgagacagctta
atcttctaaaacaaataataaaatagacaccacttaagcatgtacctgtg
tgcctctgtttcatttgctttcatgagccctgagctccgtctttgcagag
gttccacaggctgatgtttaatgctgtatgctcatccctaaccatgggac
agtggggcaccaatgggttgacagatgctcactgagatatgtatcaatca
accattatcaatacagtagagcaggctggcagggagtgaaggagacaggg
cacaaggcgaactgccagtgagaggagactttcaagttcagcttttgctt
tcaactctctactaagcatgaaaaataaaaattaaaaataaatctgaagt
tttagggccagccatgctttttggtttaatgcattgtggtagaaatttgt
cctcatagtagagacatgtacgtattataagcaatgcagggaatgtaagg
aaaggatctccttatccctgtgtgtgtacatgctttcacatgcatgtgtg
tgcatgctctgataacatgattttgattttccttgtagctcagtagttag
gaacacttgttactcatgcagagtacccaggtttattgcccaccatcttg
aactctatttccaggtggtcaatgcccttttccaatctccatgggcagca
ggcactcacatacttacaactatttagccaaaaccctcataaagagaaat
atataaatcttttaaaaaaaacctatatagtctataaatacttcaagtat
tttcagcatgactatttccttttcatttctaaatttgaagtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgcatgttagtgatatatgttatacacattaa
gttaatcaagactgatgtcagtggtacaattatatcattta
gaattctttacttatgaaagaatttcagtgctgaagcaaagaccaaagtc
aaagacacatttgggagataagaggagaccctccttcctttagacacata
acacaggaacacatttactctgtcactgttagtgaagttgaggttataac
tttcccccctatgttaccccctttagacactacctgatgactctgcagag
ttctatacaaagttcaggatcattgagaaatatatatttcacaaagcaaa
aacctagcagtgctagtgtggaagactgaaggctacaaatgggagatggg
accgtcagaggacacccaggctttcctcagggcaagtgctagccactgcc
accatctctaccacaacttcacattttccagaacaggaaacttcacaaac
tagagttgatggtgatacttaaaaggaccatgtacggagaggacagagcc
atctaactcagtccaccttctctttctgtgtttctttctttctctatttg
gcagatttcttgtggtagggtctcagtatgctaccaaggctggcttcaga
tttctgcactcaagtcactctttggcctcagcttcccaagaacctagaaa
cagaagaaccaccattccccagtgtgtcacatgcacttttcatgccaacc
taatgcttcattaattgagtgggacggagctaccaggaagggatgagtaa
gccaatagaagccatgctgactaaaagtcatgacatggaccaaaacatgt
atcaattggttgacagctataaaggagttcctgggagggagacacttcag
cctgctctagatattataaagaatgggtgcatttgtgagggaagcaggaa
caaatattaacagggcaaagcatcagccaacaatccagttccttccaaat
aacttcaaattattcatgagtgatactactcaatactgagtcaggtagcc
gtcatcacccggctgagaaccatggataaattagacagccctggttagaa
tagagccatacattagtagtcagccagaaaataactagcatcatctatgt
tctaccttcactcaacccttcagctggaatatgcagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189717825_189718768
seq2: B6Ng01-160B17.b_46_985

seq1  GAATTCCACGGCCATTCTAATAAATGATTTTTATTTACTGAGACAGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGCCATTCTAATAAATGATTTTTATTTACTGAGACAGCTTA  50

seq1  ATCTTCTAAAACAAATAATAAAATAGACACCACTTAAGCATGTACCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTAAAACAAATAATAAAATAGACACCACTTAAGCATGTACCTGTG  100

seq1  TGCCTCTGTTTCATTTGCTTTCATGAGCCCTGAGCTCCGTCTTTGCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGTTTCATTTGCTTTCATGAGCCCTGAGCTCCGTCTTTGCAGAG  150

seq1  GTTCCACAGGCTGATGTTTAATGCTGTATGCTCATCCCTAACCATGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACAGGCTGATGTTTAATGCTGTATGCTCATCCCTAACCATGGGAC  200

seq1  AGTGGGGCACCAATGGGTTGACAGATGCTCACTGAGATATGTATCAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGCACCAATGGGTTGACAGATGCTCACTGAGATATGTATCAATCA  250

seq1  ACCATTATCAATACAGTAGAGCAGGCTGGCAGGGAGTGAAGGAGACAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTATCAATACAGTAGAGCAGGCTGGCAGGGAGTGAAGGAGACAGGG  300

seq1  CACAAGGCGAACTGCCAGTGAGAGGAGACTTTCAAGTTCAGCTTTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCGAACTGCCAGTGAGAGGAGACTTTCAAGTTCAGCTTTTGCTT  350

seq1  TCAACTCTCTACTAAGCATGAAAAATAAAAATTAAAAATAAATCTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTCTACTAAGCATGAAAAATAAAAATTAAAAATAAATCTGAAGT  400

seq1  TTTAGGGCCAGCCATGCTTTTTGGTTTAATGCATTGTGGTAGAAATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGCCAGCCATGCTTTTTGGTTTAATGCATTGTGGTAGAAATTTGT  450

seq1  CCTCATAGTAGAGACATGTACGTATTATAAGCAATGCAGGGAATGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAGTAGAGACATGTACGTATTATAAGCAATGCAGGGAATGTAAGG  500

seq1  AAAGGATCTCCTTATCCCTGTGTGTGTACATGCTTTCACATGCATGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCTCCTTATCCCTGTGTGTGTACATGCTTTCACATGCATGTGTG  550

seq1  TGCATGCTCTGATAACATGATTTTGATTTTCCTTGTAGCTCAGTAGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTCTGATAACATGATTTTGATTTTCCTTGTAGCTCAGTAGTTAG  600

seq1  GAACACTTGTTACTCATGCAGAGTACCCAGGTTTATTGCCCACCATCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTGTTACTCATGCAGAGTACCCAGGTTTATTGCCCACCATCTTG  650

seq1  AACTCTATTTCCAGGTGGTCAATGCCCTTTTCCAATCTCCATGGGCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATTTCCAGGTGGTCAATGCCCTTTTCCAATCTCCATGGGCAGCA  700

seq1  GGCACTCACATACTTACAACTATTTAGCCAAAACCCTCATAAAGAGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCACATACTTACAACTATTTAGCCAAAACCCTCATAAAGAGAAAT  750

seq1  ATATAAATCTTTTAAAAAAAACCTATATAGTCTATAAATACTTCAAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATCTTTTAAAAAAAACCTATATAGTCTATAAATACTTCAAGTAT  800

seq1  TTTCAGCATGACTATTTCCTTTTCATTTCTAAATTTGAAGTGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCATGACTATTTCCTTTTCATTTCTAAATTTGAAGTGTGTGTGTG  850

seq1  TGTGTGTGTGTGTGTGTGTGCATGTTAGTGATATATGTTTATACACATTA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGCATGTTAGTGATATATG-TTATACACATTA  899

seq1  TGTATAATCAGGACTGTTGTCAAGTGTCACAATTATATTCATTT  944
       || |||||| ||||| |||| ||||  ||||||||| ||||||
seq2  AGT-TAATCAAGACTGATGTC-AGTGGTACAATTATA-TCATTT  940

seq1: chr1_189902242_189903359
seq2: B6Ng01-160B17.g_69_1157 (reverse)

seq1  CATCTTAGCATA-TCCAGACTGAAGGTGTGAGCTGAAGGGTAGAACATAG  49
      |||||  ||||| ||||| |||||||  |||| |||| ||||||||||||
seq2  CATCT--GCATATTCCAG-CTGAAGGGTTGAG-TGAA-GGTAGAACATAG  45

seq1  ATGAATGCTAGTTTATTTTCTGTGCCTGGACTACCTTAATGTATTGCTTC  99
      ||| ||||||| |||||||||| ||   ||||||  |||||||| || ||
seq2  ATG-ATGCTAG-TTATTTTCTG-GC--TGACTAC--TAATGTATGGC-TC  87

seq1  TACTCCTAACCAGGGCTTGGTTCTAATTTTATCCATGTTCCTCAAGCCGG  149
      || | ||||||||||||    ||||| |||||||||| | ||| ||||||
seq2  TA-TTCTAACCAGGGCT---GTCTAA-TTTATCCATGGTTCTC-AGCCGG  131

seq1  GTGAATGACGGCTACCCTGACCTCAGTATTGAGTTAGTATCAACTCATGA  199
      ||| |||||||||| ||||| |||||||||||| ||||||| ||||||||
seq2  GTG-ATGACGGCTA-CCTGA-CTCAGTATTGAG-TAGTATC-ACTCATGA  176

seq1  ATAATTTGGAAGTATTTGGAAGGAAACTGGATTGTTGGCTGATGCTTTGG  249
      |||||||| |  ||||||||||| ||||||||||||||||||||||||| 
seq2  ATAATTTGAAGTTATTTGGAAGG-AACTGGATTGTTGGCTGATGCTTTGC  225

seq1  CCTGTTTAAATATTTGTTCCTGCTTCCCTCACAAATGCACCCCATTCTTT  299
      ||||||  ||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTGTT--AATATTTGTTCCTGCTTCCCTCACAAATGCA-CCCATTCTTT  272

seq1  ATAATATCTAGAAGCAGGCTGAAGTGTCTCCCTCCCAGGAACTCCTTTAT  349
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCTAG-AGCAGGCTGAAGTGTCTCCCTCCCAGGAACTCCTTTAT  321

seq1  AGCTGTCAACCCAATTGATACATGTTTTGGGTCCATGTCATGACTTTTAG  399
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  AGCTGTCAA-CCAATTGATACATGTTTT-GGTCCATGTCATGACTTTTAG  369

seq1  TCAGCATGGCTTCTATTGGCTTACTCAT-CCTTCCTGGTAGCTCCGTCCC  448
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAGCATGGCTTCTATTGGCTTACTCATCCCTTCCTGGTAGCTCCGTCCC  419

seq1  ACTCAATTAATGAAGCATTAGGTTGGCATGAAAAGTGCATGTGACACACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTAATGAAGCATTAGGTTGGCATGAAAAGTGCATGTGACACACT  469

seq1  GGGGAATGGTGGTTCTTCTGTTTCTAGGTTCTTGGGAAGCTGAGGCCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGGTGGTTCTTCTGTTTCTAGGTTCTTGGGAAGCTGAGGCCAAA  519

seq1  GAGTGACTTGAGTGCAGAAATCTGAAGCCAGCCTTGGTAGCATACTGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACTTGAGTGCAGAAATCTGAAGCCAGCCTTGGTAGCATACTGAGA  569

seq1  CCCTACCACAAGAAATCTGCCAAATAGAGAAAGAAAGAAACACAGAAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCACAAGAAATCTGCCAAATAGAGAAAGAAAGAAACACAGAAAGA  619

seq1  GAAGGTGGACTGAGTTAGATGGCTCTGTCCTCTCCGTACATGGTCCTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGACTGAGTTAGATGGCTCTGTCCTCTCCGTACATGGTCCTTTT  669

seq1  AAGTATCACCATCAACTCTAGTTTGTGAAGTTTCCTGTTCTGGAAAATGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCACCATCAACTCTAGTTTGTGAAGTTTCCTGTTCTGGAAAATGT  719

seq1  GAAGTTGTGGTAGAGATGGTGGCAGTGGCTAGCACTTGCCCTGAGGAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTGGTAGAGATGGTGGCAGTGGCTAGCACTTGCCCTGAGGAAAG  769

seq1  CCTGGGTGTCCTCTGACGGTCCCATCTCCCATTTGTAGCCTTCAGTCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGTCCTCTGACGGTCCCATCTCCCATTTGTAGCCTTCAGTCTTC  819

seq1  CACACTAGCACTGCTAGGTTTTTGCTTTGTGAAATATATATTTCTCAATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAGCACTGCTAGGTTTTTGCTTTGTGAAATATATATTTCTCAATG  869

seq1  ATCCTGAACTTTGTATAGAACTCTGCAGAGTCATCAGGTAGTGTCTAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAACTTTGTATAGAACTCTGCAGAGTCATCAGGTAGTGTCTAAAG  919

seq1  GGGGTAACATAGGGGGGAAAGTTATAACCTCAACTTCACTAACAGTGACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAACATAGGGGGGAAAGTTATAACCTCAACTTCACTAACAGTGACA  969

seq1  GAGTAAATGTGTTCCTGTGTTATGTGTCTAAAGGAAGGAGGGTCTCCTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATGTGTTCCTGTGTTATGTGTCTAAAGGAAGGAGGGTCTCCTCT  1019

seq1  TATCTCCCAAATGTGTCTTTGACTTTGGTCTTTGCTTCAGCACTGAAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCCAAATGTGTCTTTGACTTTGGTCTTTGCTTCAGCACTGAAATT  1069

seq1  CTTTCATAAGTAAAGAATTC  1118
      ||||||||||||||||||||
seq2  CTTTCATAAGTAAAGAATTC  1089