BAC Information

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BAC

Clone NameB6Ng01-160E21
Chromosome1 (Build37)
Map Location 162,778,534 - 162,964,286
singlet/doubletdoublet
Overlap geneEG620750, Rc3h1, Serpinc1, Zbtb37
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52
Downstream geneGas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160E21.bB6Ng01-160E21.g
ACCDH953717DH953718
length1,2161,101
definitionDH953717|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E21, 5' end.DH953718|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,778,534 - 162,779,761)(162,963,184 - 162,964,286)
sequence
gaattccaagccaacctagctccagagttagactttgcctcagaaaacca
aacagaaaaaaaaattgcttcctatgtatgttctttaaaatattttaaaa
tttattttagtttgtgtttataagtgttttgtccgaatgtctgtttacca
tgtgtgtgcttggtgcccacggaggtcagaagaaggtgctggatcctcgg
ggattggtgctatgatggctatacgccaccatgtggacactgggaattga
acccagggcctctgcaagtgccctatagcaccgagtcatctttccagccc
tcatgctatatattcttcttcagaaagcagtgaaggatgaacatcactgt
aaggaaaaatggaagataatagcacaggcaaccatggaattgaaaagaat
ttgagaatgagaattttacggagatttatactgattatatggtttgggaa
aagcaaccaggggtagggagatttctgggcatattaacaaacaaggcctg
aaggagtagaaggggaggaatatgttactaaaagccagaaacagcagcaa
atgaagagaataagctgacaggaaccatgactttcaccaaccgagacagt
cagggacatcaatacttcatcttgctgggcatggtggtacacatctctaa
tcccagaatttaggcaagagaactgtgtgttcaatgcaagcctgggtttc
agagtgaaactttgtctcaaaaagccaaacaagtagacacgcttaaatcc
ttaaatcctctcgcacacagagggcagaaataggctgatctctatgtgtt
ttaagccagcctgggtgagactccatcttaaaaagaaaacacatgacaca
catacacctcacacacacacacacacagacaccccacacacacatacaca
tccataaaacaaacacacacagagacatatacatactccaccccacacac
cacagatacacacacacacaaacaaacatacacccacggagacatatacc
actcaatattacacggactttcacaaatacctataccaagccactacata
ttctatcccccacacacatggcatacccaatatcaccgagaccatacgtg
cccaatcaaactcagcccatgaacacacccaatggacacgcacaaaccac
aacacacagcgccttccaatttttcatcattacgtctctctttcccaaaa
tctcggctctgctctt
tgatggcatcgacagaggcacttaatggattaaaagtttcaaaacaaaca
ataacgctttggaaaaaggtcagattggttaaagttgcgtcttgaaagcc
gtgtttgcacttacctgtttactcaataagtgtattgtaaatgcgaggtg
ataaagtgagcttgtccggactacttcctggtgtgctgtgtagtctcata
aatttagagaaacattggatgcacggtgagcctaaatccttgtggtatac
tggaactaccctcaactaattaagactatttgatgcaattgcagtctttg
tggtgtgaaatttcaggctttatttttgtcagcagctgtgggaaaccaac
tttcccagtcaaagtagcatcaccactttggaatacccaagtttcaagtt
tgttggggagaaaaagtattacttagtttttgctaactctggcaactagg
ccacaaattctctgcatgtgaattgaatgctgacagggctgtggaatgtt
tctcagagtcacctcagagtcccatattcaaaaagtgggagctcaaactg
gtaagcttaaaaatatgggcctaatcgggcatggtagtcaaacacctcta
acacgagcattctttaatctcagcagaagcagtcagctctttttgagtta
gaaaccagatggtctacatagtgagttccaggaatagcctgggcttcata
gaccctgtcaaaaacaaatatctggtgggtggcttaattctagcattcct
ggaggtagatcgctaagttccaggctagtctggtctactgagcaagttat
agggcatccagagctttttagagggaccactgtctcatggggaaaagtag
tgataatagcgaccattcatgtaggatattagactttatacccaatctgt
atgtgtttgatgcccttcttagtgaactcctgtctttattttatatagtc
tactaataaagtatgggcatagcttgaatttttcgcaatgtagcagtcac
cttttttggtgtttaattaccattttaccaggaaactaaaatacctgtac
cagctcggcagctttacgtaatcctagcacttagagatggaatcaggagt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162778534_162779761
seq2: B6Ng01-160E21.b_45_1260

seq1  GAATTCCAAGCCAACCTAGCTCCAGAGTTAGACTTTGCCTCAGAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCAACCTAGCTCCAGAGTTAGACTTTGCCTCAGAAAACCA  50

seq1  AACAGAAAAAAAAATTGCTTCCTATGTATGTTCTTTAAAATATTTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAAAAAAATTGCTTCCTATGTATGTTCTTTAAAATATTTTAAAA  100

seq1  TTTATTTTAGTTTGTGTTTATAAGTGTTTTGTCCGAATGTCTGTTTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAGTTTGTGTTTATAAGTGTTTTGTCCGAATGTCTGTTTACCA  150

seq1  TGTGTGTGCTTGGTGCCCACGGAGGTCAGAAGAAGGTGCTGGATCCTCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCTTGGTGCCCACGGAGGTCAGAAGAAGGTGCTGGATCCTCGG  200

seq1  GGATTGGTGCTATGATGGCTATACGCCACCATGTGGACACTGGGAATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGTGCTATGATGGCTATACGCCACCATGTGGACACTGGGAATTGA  250

seq1  ACCCAGGGCCTCTGCAAGTGCCCTATAGCACCGAGTCATCTTTCCAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGCCTCTGCAAGTGCCCTATAGCACCGAGTCATCTTTCCAGCCC  300

seq1  TCATGCTATATATTCTTCTTCAGAAAGCAGTGAAGGATGAACATCACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTATATATTCTTCTTCAGAAAGCAGTGAAGGATGAACATCACTGT  350

seq1  AAGGAAAAATGGAAGATAATAGCACAGGCAACCATGGAATTGAAAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAATGGAAGATAATAGCACAGGCAACCATGGAATTGAAAAGAAT  400

seq1  TTGAGAATGAGAATTTTACGGAGATTTATACTGATTATATGGTTTGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATGAGAATTTTACGGAGATTTATACTGATTATATGGTTTGGGAA  450

seq1  AAGCAACCAGGGGTAGGGAGATTTCTGGGCATATTAACAAACAAGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACCAGGGGTAGGGAGATTTCTGGGCATATTAACAAACAAGGCCTG  500

seq1  AAGGAGTAGAAGGGGAGGAATATGTTACTAAAAGCCAGAAACAGCAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTAGAAGGGGAGGAATATGTTACTAAAAGCCAGAAACAGCAGCAA  550

seq1  ATGAAGAGAATAAGCTGACAGGAACCATGACTTTCACCAACCGAGACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGAATAAGCTGACAGGAACCATGACTTTCACCAACCGAGACAGT  600

seq1  CAGGGACATCAATACTTCATCTTGCTGGGCATGGTGGTACACATCTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACATCAATACTTCATCTTGCTGGGCATGGTGGTACACATCTCTAA  650

seq1  TCCCAGAATTTAGGCAAGAGAACTGTGTGTTCAATGCAAGCCTGGGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAATTTAGGCAAGAGAACTGTGTGTTCAATGCAAGCCTGGGTTTC  700

seq1  AGAGTGAAACTTTGTCTCAAAAAGCCAAACAAGTAGACACGCTTAAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAAACTTTGTCTCAAAAAGCCAAACAAGTAGACACGCTTAAATCC  750

seq1  TTAAATCCTCTCGCACACAGAGGGCAGAAATAGGCTGATCTCTATGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCTCTCGCACACAGAGGGCAGAAATAGGCTGATCTCTATGTGTT  800

seq1  TAAGGCCAGCCTGGGTGAGACTCCATCTTAAAAAGAAAACACATGACACA  850
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCAGCCTGGGTGAGACTCCATCTTAAAAAGAAAACACATGACACA  850

seq1  CATACACCTCACACACACACACACACAGACACCCCACACACACATACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACCTCACACACACACACACACAGACACCCCACACACACATACACA  900

seq1  TCCATAAAACAAACACACACAGAGACATATACATACTCCA-CACACACAC  949
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  TCCATAAAACAAACACACACAGAGACATATACATACTCCACCCCACACAC  950

seq1  CACAGATACACACACACACAAACAAACATACACCCCACAGAGACATATAC  999
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  CACAGATACACACACACACAAACAAACATACA-CCCACGGAGACATATAC  999

seq1  CACACAAATATACACAGACATACACAAATACC-ATACACAAGCACACCAC  1048
      ||| |||   ||||| ||| | |||||||||| |||| ||||| ||| ||
seq2  CACTCAATATTACACGGACTTTCACAAATACCTATAC-CAAGC-CACTAC  1047

seq1  ATATACATACACACCACACACAT-GCATACCACATATACACAGAGACACA  1097
      |||| | ||  | |||||||||| |||||||  |||| ||| ||||| ||
seq2  ATATTC-TATCCCCCACACACATGGCATACCCAATAT-CACCGAGAC-CA  1094

seq1  TACGTGCACCATACACACACAGCCCACATAGACACACACCACATAGACAC  1147
      ||||||| |||  || || |||||||    || |||||||  || |||||
seq2  TACGTGC-CCAATCAAACTCAGCCCA---TGA-ACACACCCAATGGACAC  1139

seq1  ACCACAAACACACACACACACACACTTCCTTCCAATTTTTCATCTTTATC  1197
        |||||||   |||| |||||||   ||||||||||||||||| ||| |
seq2  -GCACAAAC---CACA-ACACACAGCGCCTTCCAATTTTTCATCATTA-C  1183

seq1  TTCT-TCTTTCCCCAAATCT-GCCTCTGCTCTT  1228
       ||| |||||||| |||||| | ||||||||||
seq2  GTCTCTCTTTCCCAAAATCTCGGCTCTGCTCTT  1216

seq1: chr1_162963184_162964286
seq2: B6Ng01-160E21.g_74_1174 (reverse)

seq1  AACTCCTGATCCTACCTCCTAAGTGCTAGGATTACTGTAAGCTGCCGAGC  50
      |||||||||| | | || |||||||||||||||||   ||||||||||| 
seq2  AACTCCTGATTCCATCT-CTAAGTGCTAGGATTACGTAAAGCTGCCGAG-  48

seq1  CTGGTACAAGGTATTTTAGATTTCACTGTAAAAT-GTAATT-AACACACA  98
      ||||||| ||||||||||| ||||   ||||||| |||||| |||||  |
seq2  CTGGTAC-AGGTATTTTAG-TTTCCTGGTAAAATGGTAATTAAACACCAA  96

seq1  AAAAAGTGACTGCTACACTGCGAAAAATTCAAGCTATGCCCATACTTTAT  148
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAGGTGACTGCTACATTGCGAAAAATTCAAGCTATGCCCATACTTTAT  146

seq1  TAGTAGACTATATAAAATAAAGACAGGAGTTCACTAAGAAGGGGCATCAA  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGTAGACTATATAAAATAAAGACAGGAGTTCACTAAGAA-GGGCATCAA  195

seq1  ACACATACAGATTGGGTATAAAGTCTAATATCCTACATGAATGGTCGCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAGATTGGGTATAAAGTCTAATATCCTACATGAATGGTCGCTA  245

seq1  TTATCACTACTTTTCCCCATGAGACAGT-GTCCCTCTATATAGCTCTGGA  297
      |||||||||||||||||||||||||||| ||||||||| | |||||||||
seq2  TTATCACTACTTTTCCCCATGAGACAGTGGTCCCTCTAAAAAGCTCTGGA  295

seq1  TGCCCTATAACTTGCTCAGTAGACCAGACTAGCCTGGAACTTAGCGATCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTATAACTTGCTCAGTAGACCAGACTAGCCTGGAACTTAGCGATCT  345

seq1  ACCTCCAGGAATGCTAGAATTAAGCCACCCACCAGATATTTGTTTTTGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGGAATGCTAGAATTAAGCCACCCACCAGATATTTGTTTTTGAC  395

seq1  AGGGTCTATGAAGCCCAGGCTATTCCTGGAACTCACTATGTAGACCATCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTATGAAGCCCAGGCTATTCCTGGAACTCACTATGTAGACCATCT  445

seq1  GGTTTCTAACTCAAAAAGAGCTGACTGCTTCTGCTGAGATTAAAGAATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTAACTCAAAAAGAGCTGACTGCTTCTGCTGAGATTAAAGAATGC  495

seq1  TCGTGTTAGAGGTGTTTGACTACCATGCCCGATTAGGCCCATATTTTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTTAGAGGTGTTTGACTACCATGCCCGATTAGGCCCATATTTTTAA  545

seq1  GCTTACCAGTTTGAGCTCCCACTTTTTGAATATGGGACTCTGAGGTGACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCAGTTTGAGCTCCCACTTTTTGAATATGGGACTCTGAGGTGACT  595

seq1  CTGAGAAACATTCCACAGCCCTGTCAGCATTCAATTCACATGCAGAGAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAACATTCCACAGCCCTGTCAGCATTCAATTCACATGCAGAGAAT  645

seq1  TTGTGGCCTAGTTGCCAGAGTTAGCAAAAACTAAGTAATACTTTTTCTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCTAGTTGCCAGAGTTAGCAAAAACTAAGTAATACTTTTTCTCC  695

seq1  CCAACAAACTTGAAACTTGGGTATTCCAAAGTGGTGATGCTACTTTGACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAACTTGAAACTTGGGTATTCCAAAGTGGTGATGCTACTTTGACT  745

seq1  GGGAAAGTTGGTTTCCCACAGCTGCTGACAAAAATAAAGCCTGAAATTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTTGGTTTCCCACAGCTGCTGACAAAAATAAAGCCTGAAATTTC  795

seq1  ACACCACAAAGACTGCAATTGCATCAAATAGTCTTAATTAGTTGAGGGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAAAGACTGCAATTGCATCAAATAGTCTTAATTAGTTGAGGGTA  845

seq1  GTTCCAGTATACCACAAGGATTTAGGCTCACCGTGCATCCAATGTTTCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGTATACCACAAGGATTTAGGCTCACCGTGCATCCAATGTTTCTC  895

seq1  TAAATTTATGAGACTACACAGCACACCAGGAAGTAGTCCGGACAAGCTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTATGAGACTACACAGCACACCAGGAAGTAGTCCGGACAAGCTCA  945

seq1  CTTTATCACCTCGCATTTACAATACACTTATTGAGTAAACAGGTAAGTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCACCTCGCATTTACAATACACTTATTGAGTAAACAGGTAAGTGC  995

seq1  AAACACGGCTTTCAAGACGCAACTTTAACCAATCTGACCTTTTTCCAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACGGCTTTCAAGACGCAACTTTAACCAATCTGACCTTTTTCCAAAG  1045

seq1  CGTTATTGTTTGTTTTGAAACTTTTAATCCATTAAGTGCCTCTGTCGATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATTGTTTGTTTTGAAACTTTTAATCCATTAAGTGCCTCTGTCGATG  1095

seq1  CCATCA  1103
      ||||||
seq2  CCATCA  1101