BAC Information

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BAC

Clone NameB6Ng01-160F09
Chromosome12 (Build37)1 (Build37)
Map Location 41,999,972 - 42,000,40181,367,323 - 81,368,329
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp277, Dock4, LOC638487, LOC100043157, LOC100043162
Downstream geneLrrn3, Immp2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160F09.bB6Ng01-160F09.g
ACCDH953737DH953738
length9971,008
definitionDH953737|Mus musculus domesticus DNA, BAC clone: B6Ng01-160F09, 5' end.DH953738|Mus musculus domesticus DNA, BAC clone: B6Ng01-160F09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,999,972 - 42,000,401)(81,367,323 - 81,368,329)
sequence
gaattcaatagttgcatgtagttacaacttttgaatacacatgtctcagt
aaatgtttacaaaaagactaattgaactttggacattgtcttagtatgcc
agcttcaaatagacttatgaaagaataggttaattcaataaaattacatg
ttttaatcacattaacgtgctttgttgcccttatttcattctgtaaagtt
attccaagtgtggtttaggggacacacttacatttagttaagtgtactca
ttgcacatcttctgagccttcacataggtccaatgatgttgctttgtgtg
tatttgctgtttagttttggcaacttgattctaactagggtcacctggaa
agagggaacttcaactgagggagaatttaccccatcaaattaaccttgaa
aggaaataaaactgtaattcatgtaatgtatgttaaatagcccaaagagt
tgtttctgagctttgaaacctggggctgagaacatagcagaacagaccag
gacatgcccgggcaagcccatcgcctccctagctcccacccctctgacct
aagttaaatgttacaggctgctgatgtttaaatggaccaatcatgtgaaa
ccgcgccaattcctccccgagccccactccttttctataaaaacccctag
cttccaagcctcgtggtcgaatccactgtctcctgttatgtgagatacgt
ttcgacccggagctccgccattaaaaaacctcttgttgttacatcaaggt
gttgtgttctattcgtgattcttgggtgcacgccgaatcagagctgagtg
ggggtttccccactgagttctttcaacctctttgcaaatttgtgcgggtt
ttttcttggttgatattggtgtaggagggcctttccttctgtgggtggtg
ctaatcctgagtgggtcctgacttcttttaatgatctactgtgatttcag
cacataaatccattacattctttttttttcccccagatgcccgtggt
gaattctttccaggaaggagataaaatgctcctgagatcaactcctgtgt
ctgagaaagctgaaataagagtctcgaaaggccctctctccatggttata
gaagaaaagaataactgctgagggaggagactgaccagctgcgctgtctg
gaaggggtctctgcaaaatattgggctggctacaggttatgcagagagtg
atcctggactgcaggtttcttaaaatgagatggaatgggaaattttggta
atacagcagcttgtgaatcttctctcgctcatactcaagttagtgactcc
aataaaaactcaatggttcaccaaattggagttcaatgcatttgatacat
tgcaaacggaatacataataaactttgaggcattcacagaaagataatat
tcggcctacacatttgatatattgtgtttggtttctctacatcaatgtta
ttcatatgatttttagtgtattagtgaaggatgttaatatagtgcttttg
cttcacttcttaggaagttttcatcttcagtcatgcttatatgataactg
ataagttttttattaccatgattattggcttttaccattccatttacctg
ctctgtgtgcaaagcaatggataaaagcattagaatgtgcatatatgatt
gcttggcaattaaattataatacaaggatttaaggcctccttgagagtga
gacagagatttgcagttcataatgtatgaagaggctgctttaatttgttt
tcttctcttttttgtaagcatgattttacattagtgtctcataatgcatg
ctgttctcaatttgggtgtgtgtgtagtggataggaaagtctcagaatta
actggcatggttgactttccagaaaaattaagaaatgtggaaaaatgagc
attgatttcctcatcagaattattagctggacccaacagatggttaaagg
tggtcttaagagaaaacaccactaatccaagggttaagaatggaagagga
acccagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41999972_42000401
seq2: B6Ng01-160F09.b_441_869 (reverse)

seq1  TGAAAGAACTCAGTGGGGAAACCCCCACTCAGCTCCCGATTCGGTGTGCA  50
      |||||||||||||||||||||||||||||||||| | ||||||| |||||
seq2  TGAAAGAACTCAGTGGGGAAACCCCCACTCAGCT-CTGATTCGGCGTGCA  49

seq1  CCCAAGAATCACGAATAGAACACAACACCTTGATGTAACAACAAGAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAATCACGAATAGAACACAACACCTTGATGTAACAACAAGAGGTT  99

seq1  TTTTAATGGCGGAGCTCCGGGTCAAAACGTATCTCACACAACAGGAGACA  150
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  TTTTAATGGCGGAGCTCCGGGTCGAAACGTATCTCACATAACAGGAGACA  149

seq1  GTGGATTCGACCACAAGGCTTGGAAGCTAGGGGTTTTTATAGAAAAGGAG  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGGATTCGACCACGAGGCTTGGAAGCTAGGGGTTTTTATAGAAAAGGAG  199

seq1  TGGGGCTGGGGGAGGAATTGGCGCGGTTTCACATGATTGGTCCATTTAAA  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCGGGGAGGAATTGGCGCGGTTTCACATGATTGGTCCATTTAAA  249

seq1  CATCAGCAGCCTGTAACATTTAACTTAGGTCAGAGGGGTGGGAGCTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCAGCCTGTAACATTTAACTTAGGTCAGAGGGGTGGGAGCTAGGG  299

seq1  AGGCGATGGGCTTGCCCGGGCATGTCCTGGTCTGTTCTGCTATGTTTTTA  350
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  AGGCGATGGGCTTGCCCGGGCATGTCCTGGTCTGTTCTGCTATGTTCTCA  349

seq1  GCCCCAGGTTTCAAAGCTCAGAAACAACTCTTTGGGCTATTTAACATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGTTTCAAAGCTCAGAAACAACTCTTTGGGCTATTTAACATACA  399

seq1  TTACATGAATTACAGTTTTATTTCCTTTCA  430
      ||||||||||||||||||||||||||||||
seq2  TTACATGAATTACAGTTTTATTTCCTTTCA  429

seq1: chr1_81367323_81368329
seq2: B6Ng01-160F09.g_69_1076

seq1  GAATTCTTTCCAGGAAGGAGATAAAATGCTCCTGAGATCAACTCCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAGGAAGGAGATAAAATGCTCCTGAGATCAACTCCTGTGT  50

seq1  CTGAGAAAGCTGAAATAAGAGTCTCGAAAGGCCCTCTCTCCATGGTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGCTGAAATAAGAGTCTCGAAAGGCCCTCTCTCCATGGTTATA  100

seq1  GAAGAAAAGAATAACTGCTGAGGGAGGAGACTGACCAGCTGCGCTGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGAATAACTGCTGAGGGAGGAGACTGACCAGCTGCGCTGTCTG  150

seq1  GAAGGGGTCTCTGCAAAATATTGGGCTGGCTACAGGTTATGCAGAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGTCTCTGCAAAATATTGGGCTGGCTACAGGTTATGCAGAGAGTG  200

seq1  ATCCTGGACTGCAGGTTTCTTAAAATGAGATGGAATGGGAAATTTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGACTGCAGGTTTCTTAAAATGAGATGGAATGGGAAATTTTGGTA  250

seq1  ATACAGCAGCTTGTGAATCTTCTCTCGCTCATACTCAAGTTAGTGACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAGCTTGTGAATCTTCTCTCGCTCATACTCAAGTTAGTGACTCC  300

seq1  AATAAAAACTCAATGGTTCACCAAATTGGAGTTCAATGCATTTGATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACTCAATGGTTCACCAAATTGGAGTTCAATGCATTTGATACAT  350

seq1  TGCAAACGGAATACATAATAAACTTTGAGGCATTCACAGAAAGATAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACGGAATACATAATAAACTTTGAGGCATTCACAGAAAGATAATAT  400

seq1  TCGGCCTACACATTTGATATATTGTGTTTGGTTTCTCTACATCAATGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCTACACATTTGATATATTGTGTTTGGTTTCTCTACATCAATGTTA  450

seq1  TTCATATGATTTTTAGTGTATTAGTGAAGGATGTTAATATAGTGCTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGATTTTTAGTGTATTAGTGAAGGATGTTAATATAGTGCTTTTG  500

seq1  CTTCACTTCTTAGGAAGTTTTCATCTTCAGTCATGCTTATATGATAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTCTTAGGAAGTTTTCATCTTCAGTCATGCTTATATGATAACTG  550

seq1  ATAAGTTTTTTATTACCATGATTATTGGCTTTTACCATTCCATTTACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTTTTATTACCATGATTATTGGCTTTTACCATTCCATTTACCTG  600

seq1  CTCTGTGTGCAAAGCAATGGATAAAAGCATTAGAATGTGCATATATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGCAAAGCAATGGATAAAAGCATTAGAATGTGCATATATGATT  650

seq1  GCTTGGCAATTAAATTATAATACAAGGA-TTAAGGCCTCCTTGAGAGTGA  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTTGGCAATTAAATTATAATACAAGGATTTAAGGCCTCCTTGAGAGTGA  700

seq1  GACAGAGATTTGCAGTTCATAATGTATGAAGAGGCTGCTTTAATTTGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGATTTGCAGTTCATAATGTATGAAGAGGCTGCTTTAATTTGTTT  750

seq1  TCTTCTCTTTTTTTGTAAGCATGATTTTACATTAGTGTCTCATAATGCAT  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTC-TTTTTTGTAAGCATGATTTTACATTAGTGTCTCATAATGCAT  799

seq1  GCTGTTCTCAATTTGGGTGTGTGTGTAGTGGATAAGAAAGTCTTCAGAAT  849
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  GCTGTTCTCAATTTGGGTGTGTGTGTAGTGGATAGGAAAGTC-TCAGAAT  848

seq1  TAACTGGCATGGTTGACTTTCCAGAGAAATT-AGAAATGTGTAAAATATG  898
      ||||||||||||||||||||||||| ||||| ||||||||| |||| |||
seq2  TAACTGGCATGGTTGACTTTCCAGAAAAATTAAGAAATGTGGAAAA-ATG  897

seq1  AGCATTGATCTCCTCATCAGAATTATAAGCTGAACCCAGCAGAGTGGTT-  947
      ||||||||| |||||||||||||||| ||||| ||||| |||| ||||| 
seq2  AGCATTGATTTCCTCATCAGAATTATTAGCTGGACCCAACAGA-TGGTTA  946

seq1  AAGGTGGTCATAAGAGAAAACACCACTTATCCAAGGG-TAAGAAT-GAAG  995
      ||||||||| ||||||||||||||||| ||||||||| ||||||| ||||
seq2  AAGGTGGTCTTAAGAGAAAACACCACTAATCCAAGGGTTAAGAATGGAAG  996

seq1  AGGAACCCAGTA  1007
      ||||||||||||
seq2  AGGAACCCAGTA  1008