BAC Information

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BAC

Clone NameB6Ng01-160I01
Chromosome1 (Build37)
Map Location 124,510,323 - 124,645,593
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666971
Downstream geneLOC666983, Dpp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160I01.bB6Ng01-160I01.g
ACCDH953861DH953862
length1,093943
definitionDH953861|Mus musculus domesticus DNA, BAC clone: B6Ng01-160I01, 5' end.DH953862|Mus musculus domesticus DNA, BAC clone: B6Ng01-160I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,644,478 - 124,645,593)(124,510,323 - 124,511,265)
sequence
gaattccaatctttagatcttaagttataaaatcattatctaccaatata
ttggcatatttatagctatcctgagatgcatgcagtccttccagattgga
catgtctgaaaatatagacaattttctgtctcatgatccaagggttctta
ctagccattaaataagagcatcggccatttcaaaagctagataagccaag
aaagtaatgccaaattcaatgtctattttttttctggtatcctcttcgac
tacttatcctagttttatgtcccaaatttctagcttctgtggttcatgtt
attttctatcactatgtactctttagttaatgtgtttcatcagttaccac
agacaaatccaattacattccagtttttgtgagattatctattcagtacc
tacttagacacaggctcactttccctggctttgtagggaatgctgtgctt
ttcagttgtcttggcagtggggatagtctgtgttctatgtgatccagaaa
atgatctacatgaattttcatgagtaaattacttaaatatatagcaattc
aaccttaaagaataataagaaagatcacagatagtatctatatgataaat
gactgttaaataagtacatggtttatagatgattgatatgttggtgatag
atcagaatagataatatataagaagatagatgacattttctctcccgtga
gtgtctaagggtgggactagccaggagtgcccaggcaacaagtggaagaa
cagctatgtcagggccattcctgtctccatctgcatccaggaggtggggc
tgtttcagcagccctctgtgcactggtcttgccaggaaagagctggtttc
ccaggagtgctgacacaggcttacagacccacaggaggaacaagctccag
ccagagtcaacaagaacatctaacaccagagattaccagatggcaagcaa
tatagaaccttacacagaaaacagagtaggtggcatcatcagacccagta
ttccaccacagcattctgaataccctaccaacgaaagcaaattgattaat
catatctcatgctgctgttaagatttaacggagaaaaagaatt
gaattctctcctttaaaggcacaggagtgaggtctattgctgtgatttgg
atcacaggaaatatacaaatataaatctgcccccacaaaacaaggagact
agagagcacagaacagacggtgagggggaaatggcaggacggggatcctt
tttgtgttttattcatcttccactgttctttctaaggtggttaatgcttt
ttaacatggacacagtcttataaaggctcaccactgtagtaatgccaact
cagtcacactctcccaagacttctaaactgttcatcatatccagtgtttt
tcatataatgaaaaggaggaaagaatgtaattcaaccacataaaacatgg
ctgctattatttctcttctgtattttagtaactaattttaaaagcagaac
tgtccttttctgtctccaaagtgaaggttccaaaacttctgccaatgcat
cagctggatgaaataaacagttcaatgaggcttttctccttgagtcctct
tttctctatttcctattggttggactatcagatgtgggaatgagagatgc
cccagagactcctcctaaaatacacagaaaggtctgcaacccagtgatcc
ataacaaattggaaggaatcataagaacagtgattctaattccgtgttct
gagtctgagcctgaagaaacagtgatgacatgagtttcagttcactgaat
catttctctggccccagggagtatcattactcttttagtcattaagactt
cagccacacaaaattccaggtcacagagataaataagactttatctagtt
ggagattgagagatagctccatggacaacatatctgttgcataagcataa
agacctgagtttggatcaccagcactgacttataaaagccaggtgtggcc
agtacacatctctgaacccaatgtttggtgcagtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_124644478_124645593
seq2: B6Ng01-160I01.b_44_1136 (reverse)

seq1  AATTCTTTTTCTCCTTTTAAAATCCTCTACCAGCAGCATGAGATATGATT  50
      |||||||||||||| ||  |||||   || ||||||||||||||||||||
seq2  AATTCTTTTTCTCCGTT--AAATC--TTAACAGCAGCATGAGATATGATT  46

seq1  TTAAATCCAAATTTTGCTTTTCCGGTGTGTTGGGGTATTCAGGATTGCTG  100
         ||||   | ||||||||  ||   || | ||||||||| || |||||
seq2  ---AATC---AATTTGCTTT--CG--TTGGTAGGGTATTCA-GAATGCTG  85

seq1  TGGTGGGAATACTGGGTTCTGATGATGCCACCTACTCTTGTTTTCTGTTG  150
      |||| ||||||||||| |||||||||||||||||||| ||||||||||  
seq2  TGGT-GGAATACTGGG-TCTGATGATGCCACCTACTC-TGTTTTCTGT--  130

seq1  GTAAGGTTCTTATATTTGCCTTTTGCCATCTGGTAATCTCTGGTGTTAGA  200
      ||||||||| |||| ||||   ||||||||||||||||||||||||||||
seq2  GTAAGGTTC-TATA-TTGC---TTGCCATCTGGTAATCTCTGGTGTTAGA  175

seq1  TGTTCTTGTTGACTCTGGCTGGAGCTTGTTCCTCCTGTGGGTCTGTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGTTGACTCTGGCTGGAGCTTGTTCCTCCTGTGGGTCTGTAAGC  225

seq1  CTGTGTCAGCACTCCTGGGAAACCAGCTCTTTCCTGGCAAGACCAGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCAGCACTCCTGGGAAACCAGCTCTTTCCTGGCAAGACCAGTGCA  275

seq1  CAGAGGGCTGCTG-AACAGCCCCACCTCCTGGATGCAGATGGAGACAGGA  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGCTGCTGAAACAGCCCCACCTCCTGGATGCAGATGGAGACAGGA  325

seq1  ATGGCCCTGACATAGCTGTTCTTCCACTTGTTGCCTGGGCACTCCTGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTGACATAGCTGTTCTTCCACTTGTTGCCTGGGCACTCCTGGCT  375

seq1  AGTCCCA-CCTTAGACACTCACGGGAGAGAAAATGTCATCTATCTTCTTA  448
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACCCTTAGACACTCACGGGAGAGAAAATGTCATCTATCTTCTTA  425

seq1  TATATTATCTATTCTGATCTATCACCAACATATCAATCATCTATAAACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATCTATTCTGATCTATCACCAACATATCAATCATCTATAAACCA  475

seq1  TGTACTTATTTAACAGTCATTTATCATATAGATACTATCTGTGATCTTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTATTTAACAGTCATTTATCATATAGATACTATCTGTGATCTTTC  525

seq1  TTATTATTCTTTAAGGTTGAATTGCTATATATTTAAGTAATTTACTCATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTCTTTAAGGTTGAATTGCTATATATTTAAGTAATTTACTCATG  575

seq1  AAAATTCATGTAGATCATTTTCTGGATCACATAGAACACAGACTATCCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCATGTAGATCATTTTCTGGATCACATAGAACACAGACTATCCCC  625

seq1  ACTGCCAAGACAACTGAAAAGCACAGCATTCCCTACAAAGCCAGGGAAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAAGACAACTGAAAAGCACAGCATTCCCTACAAAGCCAGGGAAAG  675

seq1  TGAGCCTGTGTCTAAGTAGGTACTGAATAGATAATCTCACAAAAACTGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGTGTCTAAGTAGGTACTGAATAGATAATCTCACAAAAACTGGA  725

seq1  ATGTAATTGGATTTGTCTGTGGTAACTGATGAAACACATTAACTAAAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTGGATTTGTCTGTGGTAACTGATGAAACACATTAACTAAAGAG  775

seq1  TACATAGTGATAGAAAATAACATGAACCACAGAAGCTAGAAATTTGGGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTGATAGAAAATAACATGAACCACAGAAGCTAGAAATTTGGGAC  825

seq1  ATAAAACTAGGATAAGTAGTCGAAGAGGATACCAGAAAAAAAATAGACAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTAGGATAAGTAGTCGAAGAGGATACCAGAAAAAAAATAGACAT  875

seq1  TGAATTTGGCATTACTTTCTTGGCTTATCTAGCTTTTGAAATGGCCGATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGGCATTACTTTCTTGGCTTATCTAGCTTTTGAAATGGCCGATG  925

seq1  CTCTTATTTAATGGCTAGTAAGAACCCTTGGATCATGAGACAGAAAATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTTAATGGCTAGTAAGAACCCTTGGATCATGAGACAGAAAATTG  975

seq1  TCTATATTTTCAGACATGTCCAATCTGGAAGGACTGCATGCATCTCAGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTTTCAGACATGTCCAATCTGGAAGGACTGCATGCATCTCAGGA  1025

seq1  TAGCTATAAATATGCCAATATATTGGTAGATAATGATTTTATAACTTAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATAAATATGCCAATATATTGGTAGATAATGATTTTATAACTTAAG  1075

seq1  ATCTAAAGATTGGAATTC  1116
      ||||||||||||||||||
seq2  ATCTAAAGATTGGAATTC  1093

seq1: chr1_124510323_124511265
seq2: B6Ng01-160I01.g_66_1008

seq1  GAATTCTCTCCTTTAAAGGCACAGGAGTGAGGTCTATTGCTGTGATTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTTTAAAGGCACAGGAGTGAGGTCTATTGCTGTGATTTGG  50

seq1  ATCACAGGAAATATACAAATATAAATCTGCCCCCACAAAACAAGGAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGAAATATACAAATATAAATCTGCCCCCACAAAACAAGGAGACT  100

seq1  AGAGAGCACAGAACAGACGGTGAGGGGGAAATGGCAGGACGGGGATCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCACAGAACAGACGGTGAGGGGGAAATGGCAGGACGGGGATCCTT  150

seq1  TTTGTGTTTTATTCATCTTCCACTGTTCTTTCTAAGGTGGTTAATGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTTATTCATCTTCCACTGTTCTTTCTAAGGTGGTTAATGCTTT  200

seq1  TTAACATGGACACAGTCTTATAAAGGCTCACCACTGTAGTAATGCCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATGGACACAGTCTTATAAAGGCTCACCACTGTAGTAATGCCAACT  250

seq1  CAGTCACACTCTCCCAAGACTTCTAAACTGTTCATCATATCCAGTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACACTCTCCCAAGACTTCTAAACTGTTCATCATATCCAGTGTTTT  300

seq1  TCATATAATGAAAAGGAGGAAAGAATGTAATTCAACCACATAAAACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAATGAAAAGGAGGAAAGAATGTAATTCAACCACATAAAACATGG  350

seq1  CTGCTATTATTTCTCTTCTGTATTTTAGTAACTAATTTTAAAAGCAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTATTTCTCTTCTGTATTTTAGTAACTAATTTTAAAAGCAGAAC  400

seq1  TGTCCTTTTCTGTCTCCAAAGTGAAGGTTCCAAAACTTCTGCCAATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTCTGTCTCCAAAGTGAAGGTTCCAAAACTTCTGCCAATGCAT  450

seq1  CAGCTGGATGAAATAAACAGTTCAATGAGGCTTTTCTCCTTGAGTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGATGAAATAAACAGTTCAATGAGGCTTTTCTCCTTGAGTCCTCT  500

seq1  TTTCTCTATTTCCTATTGGTTGGACTATCAGATGTGGGAATGAGAGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTATTTCCTATTGGTTGGACTATCAGATGTGGGAATGAGAGATGC  550

seq1  CCCAGAGACTCCTCCTAAAATACACAGAAAGGTCTGCAACCCAGTGATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGACTCCTCCTAAAATACACAGAAAGGTCTGCAACCCAGTGATCC  600

seq1  ATAACAAATTGGAAGGAATCATAAGAACAGTGATTCTAATTCCGTGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAATTGGAAGGAATCATAAGAACAGTGATTCTAATTCCGTGTTCT  650

seq1  GAGTCTGAGCCTGAAGAAACAGTGATGACATGAGTTTCAGTTCACTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGAGCCTGAAGAAACAGTGATGACATGAGTTTCAGTTCACTGAAT  700

seq1  CATTTCTCTGGCCCCAGGGAGTATCATTACTCTTTTAGTCATTAAGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCTGGCCCCAGGGAGTATCATTACTCTTTTAGTCATTAAGACTT  750

seq1  CAGCCACACAAAATTCCAGGTCACAGAGATAAATAAGACTTTATCTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACACAAAATTCCAGGTCACAGAGATAAATAAGACTTTATCTAGTT  800

seq1  GGAGATTGAGAGATAGCTCCATGGACAACATATCTGTTGCATAAGCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTGAGAGATAGCTCCATGGACAACATATCTGTTGCATAAGCATAA  850

seq1  AGACCTGAGTTTGGATCACCAGCACTGACTTATAAAAGCCAGGTGTGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGAGTTTGGATCACCAGCACTGACTTATAAAAGCCAGGTGTGGCC  900

seq1  AGTACACATCTCTGAACCCAATGTTTGGTGCAGTGTGTGTGTG  943
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACATCTCTGAACCCAATGTTTGGTGCAGTGTGTGTGTG  943