BAC Information

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BAC

Clone NameB6Ng01-160J24
Chromosome1 (Build37)
Map Location 104,353,122 - 104,354,150
singlet/doubletsinglet
Overlap geneLOC100041056
Upstream genenone
Downstream geneLOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160J24.bB6Ng01-160J24.g
ACCDH953949DH953950
length1,0351,188
definitionDH953949|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J24, 5' end.DH953950|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctctaggctgtactggtggtaagcagtaaaatgtttaaggtt
aaataaagtaggagaaactcagtcagtggggtcatgacattcatatattt
tcctttgtcttttttttttttttactctgtttgtgtgtgtgtgtgtgcgt
gctgttaaatatatatatgtgctggtagatgcatgtgtgggcttgtatgt
ggaagtccagaaacaatcctaggtatagtttgataagactctgtctacct
tgctttttatgtgggagttgcctactggattgaatatcaccaattttgct
aggttgtctgacaagcaagccaaaggagtttacattcatttatctagcac
taaaaataaagggacatgccaccaggcccatgttcttaatctatctataa
gtcatggccatatatagctatatctgtattttttatgtggattgtgggga
gctgaactctaaacctcaaatatgtgcatcaggtactcttacttgtggag
tcaattccctagtacctactttttattagtggtggttttagaacttaact
tgatcctcacttttatgatgcaaagacttcactgactgtgccatggtcct
gttagcttgaccatgacccttattcttttgaccatggacccagcaaggtt
atttctctcctcagtctaaacatggacacatacactggagccaaatgatc
aatcaaaaaatgaaatccccagaattgtggctctttttacacacaaattc
attttctcagagacctgccagcagtacagaaatcagagagccatcagaga
ctcagactctattgctttcaaatctatagtcataagacaggctgacctgg
tgcttactttggtattctctgtataggaaagctttgtggagcaaatccat
tctgaaaacagctggctgtaaggattgcttaacttttctatatagtacct
catacacttcagaactttgttacctttcaggaactgggagatgcatcaat
ccatcacctctttttgtggttggtgtggtttgttt
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatttcactaaa
atcagggactagacaaggctgcccactttctccctatcttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaggtgaaagatctgtataaaaaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaatatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttcctacagagcaattgtgataaaaactgca
tggtactgggtatagagacagacaagtagaccaatggaatagaattgaag
atccagaaatgaacccacacacctatggtcacttgatcttcgacaaggga
gctaaaaccatccagtggaagaaagacagcattttcaacaatggtgttgg
cacactggttgtatcgtgtagaagaatgcgaatcgatcatactaatcttc
cttgtactaaagtcaaatctaagtggatcaagaaacttcaaataaaacca
gagacctgaaactatagaggagaaagtgggggaaagccttgaagatatgg
cacaaggaaaattccttcacagaacagcatgctgtgctgtaagaatcgaa
atcgacaatgggaacctaatggaaactctaagaagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104353122_104354150
seq2: B6Ng01-160J24.b_43_1077

seq1  GAATTCATCTCTAGGCTGTACTGGTGGTAAGCAGTAAAATGTTTAAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTAGGCTGTACTGGTGGTAAGCAGTAAAATGTTTAAGGTT  50

seq1  AAATAAAGTAGGAGAAACTCAGTCAGTGGGGTCATGACATTCATATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGTAGGAGAAACTCAGTCAGTGGGGTCATGACATTCATATATTT  100

seq1  TCCTTTGTCTTTTTTTTTTTTTTACTCTGTTTGTGTGTGTGTGTGTGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTCTTTTTTTTTTTTTTACTCTGTTTGTGTGTGTGTGTGTGCGT  150

seq1  GCTGTTAAATATATATATGTGCTGGTAGATGCATGTGTGGGCTTGTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAAATATATATATGTGCTGGTAGATGCATGTGTGGGCTTGTATGT  200

seq1  GGAAGTCCAGAAACAATCCTAGGTATAGTTTGATAAGACTCTGTCTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCAGAAACAATCCTAGGTATAGTTTGATAAGACTCTGTCTACCT  250

seq1  TGCTTTTTATGTGGGAGTTGCCTACTGGATTGAATATCACCAATTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTATGTGGGAGTTGCCTACTGGATTGAATATCACCAATTTTGCT  300

seq1  AGGTTGTCTGACAAGCAAGCCAAAGGAGTTTACATTCATTTATCTAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCTGACAAGCAAGCCAAAGGAGTTTACATTCATTTATCTAGCAC  350

seq1  TAAAAATAAAGGGACATGCCACCAGGCCCATGTTCTTAATCTATCTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAAGGGACATGCCACCAGGCCCATGTTCTTAATCTATCTATAA  400

seq1  GTCATGGCCATATATAGCTATATCTGTATTTTTTATGTGGATTGTGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGCCATATATAGCTATATCTGTATTTTTTATGTGGATTGTGGGGA  450

seq1  GCTGAACTCTAAACCTCAAATATGTGCATCAGGTACTCTTACTTGTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACTCTAAACCTCAAATATGTGCATCAGGTACTCTTACTTGTGGAG  500

seq1  TCAATTCCCTAGTACCTACTTTTTATTAGTGGTGGTTTTAGAACTTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCTAGTACCTACTTTTTATTAGTGGTGGTTTTAGAACTTAACT  550

seq1  TGATCCTCACTTTTATGATGCAAAGACTTCACTGACTGTGCCATGGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTCACTTTTATGATGCAAAGACTTCACTGACTGTGCCATGGTCCT  600

seq1  GTTAGCTTGACCATGACCCTTATTCTTTTGACCATGGACCCAGCAAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTGACCATGACCCTTATTCTTTTGACCATGGACCCAGCAAGGTT  650

seq1  ATTTCTCTCCTCAGTCTAAACATGGACACATACACTGGAGCCAAATGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTCCTCAGTCTAAACATGGACACATACACTGGAGCCAAATGATC  700

seq1  AATCAAAAAATGAAATCCCCAGAATTGTGGCTCTTTTTACACACAAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAAATGAAATCCCCAGAATTGTGGCTCTTTTTACACACAAATTC  750

seq1  ATTTTCTCAGAGACCTGCCAGCAGTACAGAAATCAGAGAGCCATCAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCAGAGACCTGCCAGCAGTACAGAAATCAGAGAGCCATCAGAGA  800

seq1  CTCAGACTCTATTGCTTTCAAATCTAATAGTCATAAGACAGGCTGACCTG  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCAGACTCTATTGCTTTCAAATCT-ATAGTCATAAGACAGGCTGACCTG  849

seq1  GTGCTTACTTTGGTATTCTCTGTATA-GAAAGCTTTGTGGAGCAAATCCA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTGCTTACTTTGGTATTCTCTGTATAGGAAAGCTTTGTGGAGCAAATCCA  899

seq1  TTCTGAAAACAAGCTGGCTGTAAGGATTGCTTTACCTCTCTAATATAGTA  949
      |||||||||| ||||||||||||||||||||| || | ||| ||||||||
seq2  TTCTGAAAAC-AGCTGGCTGTAAGGATTGCTTAACTTTTCT-ATATAGTA  947

seq1  CCTCATACAC-TCAGAACCTCTGTTTACCTTCCAGGAACT-GGAGATGCA  997
      |||||||||| |||||| || || ||||||| |||||||| |||||||||
seq2  CCTCATACACTTCAGAA-CTTTG-TTACCTTTCAGGAACTGGGAGATGCA  995

seq1  TTCAATCCCATTCACTCTTTTT----------TTGTTTGTTT  1029
       ||||| ||||   ||||||||          | ||||||||
seq2  -TCAAT-CCATCACCTCTTTTTGTGGTTGGTGTGGTTTGTTT  1035