BAC Information

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BAC

Clone NameB6Ng01-160O23
Chromosome1 (Build37)
Map Location 148,338,608 - 148,464,396
singlet/doubletdoublet
Overlap geneB830045N13Rik
Upstream geneLOC383571
Downstream geneLOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160O23.bB6Ng01-160O23.g
ACCDH954182DH954183
length7961,130
definitionDH954182|Mus musculus domesticus DNA, BAC clone: B6Ng01-160O23, 5' end.DH954183|Mus musculus domesticus DNA, BAC clone: B6Ng01-160O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,463,858 - 148,464,396)(148,338,608 - 148,339,740)
sequence
gaattctcaggcagcaaaaggactctgaagatggttattgtgtaacaggt
tgaactctgctgcggttaacctccaaatctgttcagaaaattgattgtca
cagtatggattcataaatgcaagaatgaatgcatttaaagcctaagttct
tctttctgaaaagaaaagtaatcaaatgtcaatcactaagctgttataac
acacaactacttagttgagacccccataaaagtttcagcaaagcaacagt
gcagtttacagaaacttgtataacagtgcattccacattgcaagtaagtt
atggtggattgcaaacaggtatttttactatggaaatcagaatagagaac
tctcaacagcccaaaagttaatctattataccagttatgccactccttgg
cttatgagccaaggacttgacatcctactctgcagatacttgtttagccg
tgttcctgttcacattagctagaaaataaaaataaaataatactgtttgt
tcaaccatgaatgggcaatgaattgttgtacatatagaccatggaataat
attgagcggttcaataaaatgaaatcatgagatttagagacaaacgatag
aattagaaaggatcatattaattgaagtaggcaaaaccaaaatgataaac
attgtaaaatctctgttattggagactcttagctccaaatctacagatgt
gagtatatattcctgagtaactgcaaaaaccaggaaagtaaaaatggacc
attcttgtgctatatcgtgtgtgagtgtgtgtgtgtgtgggggggg
gaattcacagtagctgaaaagcccagaagatgcatctcgggtcccctaga
ttactccgtggcatatgctgataataaccaagtcacctttagttcttaac
ttcttcattagtgtgagagaacagaataaattatctttataaacgggcta
gtaccaatttttttttacttgagattcaatacacttaatcagtttattta
acagcatcttgatcttataaattaaatgtgaaaattactataaacagagg
tactaaagcaacttcgaatactttcgatgtgaaagctctgaagacaaagt
aaacagcaaggagactaaagtaagtaaacttcaatattgtagtgaggaca
aatatgcatgcataaatttgtgtcaaatttcatctgtaagtaataatata
tattcatatttacatatccagttcatatacatatataaaattttccttaa
tgggttcttaattttatattttcttataacttagatttaatattaaaaat
aacatgacatatagatactttctgtgtaagcaacctgcagcatgatttct
gtatttattttgaggacaatgttgagacagcacagcagggttaattctta
tcaccaagccccaaaagtgaggggtcaatcttggaaccctacatggtgga
aaaggtgattcccccatgtgagcttctgcacacacacacacacacacaca
cacacacacacacacacaaccaaataatataaaaagaatatgaatgtgtt
tctgttttttcagagggggctctgaatgaccaatccacagatccagctat
atgaagaaccttctctaattctacaatccatctctagcattaaatcattt
gaatgctgctgtggcagatttttttagtgaggtaatatgtgaaatatatt
tatttgtagctatgaaggaagatacgacaagaaggcaaagaacacccatc
acttgcttgaaatccactaaatgagcaccttcagatgagcacccttgtat
gaagagctacccttctcagcttagaacccaaacatcttacattcacaagg
cattgtaaaagacctttgctctggaaacaagaacaggaacacatgttcta
tgacattattggaaggatatttgagtaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148463858_148464396
seq2: B6Ng01-160O23.b_302_840 (reverse)

seq1  CCCCCCCACACACACACACACTCACACACGATATAGCACAAGAATGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCACACACACACACACTCACACACGATATAGCACAAGAATGGTCC  50

seq1  ATTTTTACTTTCCTGGTTTTTGCAGTTACTCAGGAATATATACTCACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACTTTCCTGGTTTTTGCAGTTACTCAGGAATATATACTCACATC  100

seq1  TGTAGATTTGGAGCTAAGAGTCTCCAATAACAGAGATTTTACAATGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTTGGAGCTAAGAGTCTCCAATAACAGAGATTTTACAATGTTTA  150

seq1  TCATTTTGGTTTTGCCTACTTCAATTAATATGATCCTTTCTAATTCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGGTTTTGCCTACTTCAATTAATATGATCCTTTCTAATTCTATC  200

seq1  GTTTGTCTCTAAATCTCATGATTTCATTTTATTGAACCGCTCAATATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTCTAAATCTCATGATTTCATTTTATTGAACCGCTCAATATTAT  250

seq1  TCCATGGTCTATATGTACAACAATTCATTGCCCATTCATGGTTGAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTCTATATGTACAACAATTCATTGCCCATTCATGGTTGAACAAA  300

seq1  CAGTATTATTTTATTTTTATTTTCTAGCTAATGTGAACAGGAACACGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTATTTTATTTTTATTTTCTAGCTAATGTGAACAGGAACACGGCT  350

seq1  AAACAAGTATCTGCAGAGTAGGATGTCAAGTCCTTGGCTCATAAGCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTATCTGCAGAGTAGGATGTCAAGTCCTTGGCTCATAAGCCAAG  400

seq1  GAGTGGCATAACTGGTATAATAGATTAACTTTTGGGCTGTTGAGAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCATAACTGGTATAATAGATTAACTTTTGGGCTGTTGAGAGTTCT  450

seq1  CTATTCTGATTTCCATAGTAAAAATACCTGTTTGCAATCCACCATAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGATTTCCATAGTAAAAATACCTGTTTGCAATCCACCATAACTT  500

seq1  ACTTGCAATGTGGAATGCACTGTTATACAAGTTTCTGTA  539
      |||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAATGTGGAATGCACTGTTATACAAGTTTCTGTA  539

seq1: chr1_148338608_148339740
seq2: B6Ng01-160O23.g_67_1196

seq1  GAATTCACAGTAGCTGAAAAGCCCAGAAGATGCATCTCGGGTCCCCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTAGCTGAAAAGCCCAGAAGATGCATCTCGGGTCCCCTAGA  50

seq1  TTACTCCGTGGCATATGCTGATAATAACCAAGTCACCTTTAGTTCTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCGTGGCATATGCTGATAATAACCAAGTCACCTTTAGTTCTTAAC  100

seq1  TTCTTCATTAGTGTGAGAGAACAGAATAAATTATCTTTATAAACGGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTAGTGTGAGAGAACAGAATAAATTATCTTTATAAACGGGCTA  150

seq1  GTACCAATTTTTTTTTACTTGAGATTCAATACACTTAATCAGTTTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAATTTTTTTTTACTTGAGATTCAATACACTTAATCAGTTTATTTA  200

seq1  ACAGCATCTTGATCTTATAAATTAAATGTGAAAATTACTATAAACAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATCTTGATCTTATAAATTAAATGTGAAAATTACTATAAACAGAGG  250

seq1  TACTAAAGCAACTTCGAATACTTTCGATGTGAAAGCTCTGAAGACAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAGCAACTTCGAATACTTTCGATGTGAAAGCTCTGAAGACAAAGT  300

seq1  AAACAGCAAGGAGACTAAAGTAAGTAAACTTCAATATTGTAGTGAGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAAGGAGACTAAAGTAAGTAAACTTCAATATTGTAGTGAGGACA  350

seq1  AATATGCATGCATAAATTTGTGTCAAATTTCATCTGTAAGTAATAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCATGCATAAATTTGTGTCAAATTTCATCTGTAAGTAATAATATA  400

seq1  TATTCATATTTACATATCCAGTTCATATACATATATAAAATTTTCCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATTTACATATCCAGTTCATATACATATATAAAATTTTCCTTAA  450

seq1  TGGGTTCTTAATTTTATATTTTCTTATAACTTAGATTTAATATTAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTTAATTTTATATTTTCTTATAACTTAGATTTAATATTAAAAAT  500

seq1  AACATGACATATAGATACTTTCTGTGTAAGCAACCTGCAGCATGATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACATATAGATACTTTCTGTGTAAGCAACCTGCAGCATGATTTCT  550

seq1  GTATTTATTTTGAGGACAATGTTGAGACAGCACAGCAGGGTTAATTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTTGAGGACAATGTTGAGACAGCACAGCAGGGTTAATTCTTA  600

seq1  TCACCAAGCCCCAAAAGTGAGGGGTCAATCTTGGAACCCTACATGGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAGCCCCAAAAGTGAGGGGTCAATCTTGGAACCCTACATGGTGGA  650

seq1  AAAGGTGATT-CCCCATGTGAGCTTCTGCACACACACACACACACACACA  699
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGATTCCCCCATGTGAGCTTCTGCACACACACACACACACACACA  700

seq1  CACACACACACACACACAACCAAATAATATAAAAAGAATATGAATGTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACAACCAAATAATATAAAAAGAATATGAATGTGTT  750

seq1  TCTGTTTTTTCAGAGGGGGCTCTGAATGACCAATCCACAGATCCAGCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTTCAGAGGGGGCTCTGAATGACCAATCCACAGATCCAGCTAT  800

seq1  ATGAAGAACCTTCTCTAATTCTACAATCCATCTCTAGCATTAAATCATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAACCTTCTCTAATTCTACAATCCATCTCTAGCATTAAATCATTT  850

seq1  GAATGCTGCTGTGGCAGATTTTTTTAGTGAGGTAATATGTGAAATATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGCTGTGGCAGATTTTTTTAGTGAGGTAATATGTGAAATATATT  900

seq1  TATTTGTAGCTATGAAGGAAGATACGACAAGAAGGCAAAGAACACCCATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAGCTATGAAGGAAGATACGACAAGAAGGCAAAGAACACCCATC  950

seq1  ACTTGCTTGAAATCCACTAAATGAGCACCTTCAGATGAGCACCCTGGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  ACTTGCTTGAAATCCACTAAATGAGCACCTTCAGATGAGCACCCTTGTAT  1000

seq1  GAAAGAAGCTACCC-TCTCAGCTTAGAACCAAAACATCTTACATTCACAA  1048
      |||   |||||||| ||||||||||||||| |||||||||||||||||||
seq2  GAA--GAGCTACCCTTCTCAGCTTAGAACCCAAACATCTTACATTCACAA  1048

seq1  GGCATTGTAAAAAAGACATTTGCTCTGAAAACAAGACAGGGGACACAATG  1098
      ||||||||  ||||||| ||||||||| ||||||||   || |||||   
seq2  GGCATTGT--AAAAGACCTTTGCTCTGGAAACAAGAACAGGAACACATGT  1096

seq1  TCTATGACATTACATGAAGGTATATTTGAGTAATC  1133
      ||||||||||||   ||||| ||||||||||||||
seq2  TCTATGACATTATTGGAAGG-ATATTTGAGTAATC  1130