BAC Information

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BAC

Clone NameB6Ng01-160P02
Chromosome1 (Build37)3 (Build37)
Map Location 149,739,871 - 149,740,31479,383,528 - 79,383,650
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneB830045N13Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160P02.bB6Ng01-160P02.g
ACCDH954188DH954189
length438229
definitionDH954188|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P02, 5' end.DH954189|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(149,739,871 - 149,740,314)(79,383,528 - 79,383,650)
sequence
tataccagtcttaaataacagtgtgagctttcatgcacacacatgtgtgg
ggggttgattaacagaaaaatcatcacgaatataggtttcaatgttgtaa
taattaagtaaaatgaaggcctagactattggataagacatgaaagcaaa
gactgagaggcaggttgaaaaggaatacatggacatgcctactattttaa
agaaaaaattgattgttcaatattaatatttaccaacgtttggttactgt
gaattttaaaacgtagatatgtacaacaatagaattcataacaactaaaa
tgtggaacgaatattgatgaactttataaccaaagcctcatattaagtga
aaatgatagctacatggggttggtacagataatttcatatggtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
aaccacattgtttctcatgactatgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtattgggatccaatgcc
ctttatggcttgcatatgtacatgaaaatagaccactcatacattagata
gatagatagatagattgatagattgatagatagatagatagatagataga
tagatagatagatagatgatagatagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149739871_149740314
seq2: B6Ng01-160P02.b_49_492 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACACACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACACCAT  50

seq1  ATGAAATTATCTGTACCAACCCCATGTAGCTATCATTTTCACTTAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTATCTGTACCAACCCCATGTAGCTATCATTTTCACTTAATATG  100

seq1  AGGCTTTGGTTATAAAGTTCATCAATATTCGTTCCACATTTTAGTTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGGTTATAAAGTTCATCAATATTCGTTCCACATTTTAGTTGTTA  150

seq1  TGAATTCTATTGTTGTACATATCTACGTTTTAAAATTCACAGTAACCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTATTGTTGTACATATCTACGTTTTAAAATTCACAGTAACCAAA  200

seq1  CGTTGGTAAATATTAATATTGAACAATCAATTTTTTCTTTAAAATAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGTAAATATTAATATTGAACAATCAATTTTTTCTTTAAAATAGTAG  250

seq1  GCATGTCCATGTATTCCTTTTCAACCTGCCTCTCAGTCTTTGCTTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCCATGTATTCCTTTTCAACCTGCCTCTCAGTCTTTGCTTTCATG  300

seq1  TCTTATCCAATAGTCTAGGCCTTCATTTTACTTAATTATTACAACATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCCAATAGTCTAGGCCTTCATTTTACTTAATTATTACAACATTGA  350

seq1  AACCTATATTCGTGATGATTTTTCTGTTAATCAACCCCCCACACATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATATTCGTGATGATTTTTCTGTTAATCAACCCCCCACACATGTGT  400

seq1  GTGCATGAAAGCTCACACTGTTATTTAAGACTGGTATAGAATTC  444
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGAAAGCTCACACTGTTATTTAAGACTGGTATAGAATTC  444

seq1: chr3_79383528_79383650
seq2: B6Ng01-160P02.g_93_302 (reverse)

seq1  TGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTCTATCTATC-ATCTATCTATCTATCTATCTATCTATCTATCTATCTA  49

seq1  TCTACCTACCTACCTATCTATCTATCTATCTATCT-ATCTAT---CTATC  96
      |||| | | ||| | |||||||||||||||||||| || |||      ||
seq2  TCTATCAATCTATCAATCTATCTATCTATCTATCTAATGTATGAGTGGTC  99

seq1  TATCTATCTGTCACACACACA---CATAGT--------------------  123
      ||| |   ||| ||| |  ||   ||||                      
seq2  TATTTTCATGT-ACATATGCAAGCCATA--AAGGGCATTGGATCCCAATA  146

seq1  --------------------------------------------------  123
                                                        
seq2  CACACATGCACACACACACACACACACACACACACACACACACACACACA  196

seq1  --------------  123
                    
seq2  CACACACACATAGT  210