BAC Information

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BAC

Clone NameB6Ng01-161B04
Chromosome1 (Build37)
Map Location 10,495,761 - 10,582,201
singlet/doubletdoublet
Overlap geneCpa6
Upstream geneRrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
Downstream geneLOC433271, C030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161B04.bB6Ng01-161B04.g
ACCDH954285DH954286
length9361,119
definitionDH954285|Mus musculus domesticus DNA, BAC clone: B6Ng01-161B04, 5' end.DH954286|Mus musculus domesticus DNA, BAC clone: B6Ng01-161B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,495,761 - 10,496,810)(10,581,085 - 10,582,201)
sequence
gaattcagcccatcctgaataggaaagaaaataagagggagcatttgccc
tttcaatttcacctctgcctctatctcagaatcagatcacctgcctggga
caagagtggctcaagctaaggcaagcgttagaaagaagaggcacacttag
ctacagtcttttcagatctggaaggtaactgagctccttcctaaaatgat
tatttctaagccctcgagatgtttaaacaatgaaggacagtcattcctgg
agctgtctctgagtggtggtgactcctagacagtactagaacaagctgag
tgaataactaattgataaatcctgaattaattcaggcactggaacctgaa
tgtcactgtcctataacctcccaggctgtaataatatccatacaagtagg
cttgtttttcacatttatctttgctgattatagcactggacttattgcat
aaatattagtgagacgtgctcaaatccttaaatattacttgaggtaaagt
agggaattgctgttgcagtttttctttttaagtgtgtgtgtatgtgtgtg
tgtgtgtgcaagttcatgtggagaccttatgctcctcattaacctcgggt
ttttttgtgggttgtttgtttgttgtcctttgccctggctcacatgattc
agctaggctggctggtggtggatccagagattcctgcctcagccgtccca
caactgagattataagtgtacactaccacatacgacttcttatgtggatc
ctggggattgaacttggatcttaaagcaaacacttttttttttttggact
gaggtatctttccagcctactgtgtttcagtcttcatgggaagattttaa
tttctttccttttcctctcctttttcacactccttcctttctttctcctt
tcctttctcgttctttccttccttccttccttcctt
gaattctaatatggtccagatctttccggccttctgctcctgccctgcag
aataacttccctaagaataggaagggataggtatccctttggtgatgtta
tagtatagagcagagagagactatctggggtaggcctgagcaaatcaaag
aaatcttcagaagcaaagagtttttccccagctgttcacagaggaagggg
tcagaggagtgttcacaaactgctacgctgggagccattcttgagagtca
caaaccaagaatgacactggtctctgggatgtgcggattcccagctgaac
agtgaaatggagacatcagtactacagatcacaggacactgaggtccaaa
taagaatgcaccagagtcctttcttggatgctttgattttagccccttga
gattctgaagaaaatttaggcatctgggactggcccactgatctgcagga
ctgtgagataagtgggctttgtttgaaacagctaagctgatgttgattta
tcctagcaatggaaaacagacttggagtacagtaaccacctacatcctgc
attttctctcttattctcctctgccacagctctaagttaattttcctggt
ttctctgactataaccaagactcttagggaaactgaacgtgattcactga
catgcttaggctgtaaattcacaatgccttatctgaaacatgatcaaatg
taaaatgtgcatacaatattgaatggaatctgagaactctggtcaccaca
tagctaattagacatagaactgctattacaaagctgcttgctttcctaat
taaatttttatttgttttgctaaagaattgaaacaagaaacttaaacaga
aaaccatgccccgagagaactggattgagaaagcactagccattaaattg
ttatttagaccataccatggcttaatcagttatgatggagagagcagttt
acagtgagcaaattagattttctttgtctgctgcagtcctacagtcttgt
tgctatgaagaagagaaggccttcatgggaggcccaagtgtctcctatgt
aaatgcacatcccctggctgaagaaaacgatgaattcctctatttccaat
tcccatgaaggcaggatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_10495761_10496810
seq2: B6Ng01-161B04.b_47_982

seq1  GAATTCAGCCCATCCTGAATAGGAAAGAAAATAAGAGGGAGCATTTGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCATCCTGAATAGGAAAGAAAATAAGAGGGAGCATTTGCCC  50

seq1  TTTCAATTTCACCTCTGCCTCTATCTCAGAATCAGATCACCTGCCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTCACCTCTGCCTCTATCTCAGAATCAGATCACCTGCCTGGGA  100

seq1  CAAGAGTGGCTCAAGCTAAGGCAAGCGTTAGAAAGAAGAGGCACACTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGGCTCAAGCTAAGGCAAGCGTTAGAAAGAAGAGGCACACTTAG  150

seq1  CTACAGTCTTTTCAGATCTGGAAGGTAACTGAGCTCCTTCCTAAAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCTTTTCAGATCTGGAAGGTAACTGAGCTCCTTCCTAAAATGAT  200

seq1  TATTTCTAAGCCCTCGAGATGTTTAAACAATGAAGGACAGTCATTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAGCCCTCGAGATGTTTAAACAATGAAGGACAGTCATTCCTGG  250

seq1  AGCTGTCTCTGAGTGGTGGTGACTCCTAGACAGTACTAGAACAAGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTCTGAGTGGTGGTGACTCCTAGACAGTACTAGAACAAGCTGAG  300

seq1  TGAATAACTAATTGATAAATCCTGAATTAATTCAGGCACTGGAACCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACTAATTGATAAATCCTGAATTAATTCAGGCACTGGAACCTGAA  350

seq1  TGTCACTGTCCTATAACCTCCCAGGCTGTAATAATATCCATACAAGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTCCTATAACCTCCCAGGCTGTAATAATATCCATACAAGTAGG  400

seq1  CTTGTTTTTCACATTTATCTTTGCTGATTATAGCACTGGACTTATTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTCACATTTATCTTTGCTGATTATAGCACTGGACTTATTGCAT  450

seq1  AAATATTAGTGAGACGTGCTCAAATCCTTAAATATTACTTGAGGTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAGTGAGACGTGCTCAAATCCTTAAATATTACTTGAGGTAAAGT  500

seq1  AGGGAATTGCTGTTGCAGTTTTTCTTTTTAAGTGTGTGTGTATGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTGCTGTTGCAGTTTTTCTTTTTAAGTGTGTGTGTATGTGTGTG  550

seq1  TGTGTGTGCAAGTTCATGTGGAGACCTTATGCTCCTCATTAACCTCGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCAAGTTCATGTGGAGACCTTATGCTCCTCATTAACCTCGGGT  600

seq1  TTTTTTGTGGGTTGTTTGTTTGTTGTCCTTTGCCCTGGCTCACATGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTGGGTTGTTTGTTTGTTGTCCTTTGCCCTGGCTCACATGATTC  650

seq1  AGCTAGGCTGGCTGGTGGTGGATCCAGAGATTCCTGCCTCAGCCGTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGCTGGCTGGTGGTGGATCCAGAGATTCCTGCCTCAGCCGTCCCA  700

seq1  CAACTGAGATTATAAGTGTACACTACCACATACGACTTCTTATGTGGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGATTATAAGTGTACACTACCACATACGACTTCTTATGTGGATC  750

seq1  CTGGGGATTGAACTTGGATCTTAAAGCAAACACTTTTTTTTTTTTGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATTGAACTTGGATCTTAAAGCAAACACTTTTTTTTTTTTGGACT  800

seq1  GAGGTATCTTTCCAGCCTACTGTGTTTCAGTCTTCATGGGAAGATTTTTA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGGTATCTTTCCAGCCTACTGTGTTTCAGTCTTCATGGGAAGA-TTTTA  849

seq1  ATTTCTTTCCTTTTTCCTCTCCTTTTTCCTCTCTCCTTTCCTTTCCTTTC  900
      |||||||||| |||||||||||||||| | | |||| ||||||| |||||
seq2  ATTTCTTTCC-TTTTCCTCTCCTTTTT-CACACTCC-TTCCTTT-CTTTC  895

seq1  TCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTT  950
      ||||||||||||   | ||||||||  | ||||||  | ||||||     
seq2  TCCTTTCCTTTCTCGTTCTTTCCTT--CCTTCCTT--CCTTCCTT-----  936

seq1  TCCTTTCCTTTCCTTTCCTTTCCTTTCCTCTCCTCTCCTCTCCTTTCTTT  1000
                                                        
seq2  --------------------------------------------------  936

seq1  CTCCTTTCCTTTCTTCCTCCTTTCCTTTCCTTTTCCCCTTCCCTTTCCTT  1050
                                                        
seq2  --------------------------------------------------  936

seq1: chr1_10581085_10582201
seq2: B6Ng01-161B04.g_88_1185 (reverse)

seq1  CTATCCTGCC-TCATGTGGAATCTGGAAATAGAGATATCATTCGTTTTCC  49
      |||||||||| ||||| ||||| |||||||||||  ||   ||||||| |
seq2  CTATCCTGCCTTCATG-GGAAT-TGGAAATAGAGGAATTCATCGTTTT-C  47

seq1  TTCAGC--AGGGATGTGCCATTTACATAGGAGACACTTTGGGGCCTCACA  97
      ||||||   |||||||| ||||||||||||||||||||  ||||||| ||
seq2  TTCAGCCAGGGGATGTG-CATTTACATAGGAGACACTT--GGGCCTCCCA  94

seq1  TGAAGGCCCTTCTCTTCCTTCATAGCACAAAGAACTGGTAAGGAACTGCA  147
      |||||| ||||||||| ||||||||||  ||| ||| |||  | ||||||
seq2  TGAAGG-CCTTCTCTT-CTTCATAGCAACAAG-ACT-GTA--GGACTGCA  138

seq1  GGCAGAACAAAGAAAATTCTAATTTTGCTCACCTGTAAACTGCTCCTCTT  197
       |||| |||||||||| ||||| |||||||| |||||||||||| ||| |
seq2  -GCAG-ACAAAGAAAA-TCTAA-TTTGCTCA-CTGTAAACTGCT-CTC-T  181

seq1  CCATCATAACTTGATTTAAGCCATGGTTATGGTCTTAATTAACAATTTAA  247
      |||||||||| ||| ||||||||||| ||||||| ||| |||||||||||
seq2  CCATCATAAC-TGA-TTAAGCCATGG-TATGGTC-TAAATAACAATTTAA  227

seq1  TTGGCTAGTGCTTTCTCAATCCAGTTCTCTCGGGGCATGGTTTTCTGTTT  297
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGGCTAGTGCTTTCTCAATCCAGTTCTCTCGGGGCATGGTTTTCTGTTT  276

seq1  AAGTTTCTTGTTTCAATTCTTTAGCAAAACAA--TAAAATTTAATTAGGA  345
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  AAGTTTCTTGTTTCAATTCTTTAGCAAAACAAATAAAAATTTAATTAGGA  326

seq1  AAGCAAGCAGCTTTGTAATAGCAGTTCTATGTCTAATTAGCTATGTGGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCAGCTTTGTAATAGCAGTTCTATGTCTAATTAGCTATGTGGTG  376

seq1  ACCAGAGTTCTCAGATTCCATTCAATATTGTATGCACATTTTACATTTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTTCTCAGATTCCATTCAATATTGTATGCACATTTTACATTTGA  426

seq1  TCATGTTTCAGATAAGGCATTGTGAATTTACAGCCTAAGCATGTCAGTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTCAGATAAGGCATTGTGAATTTACAGCCTAAGCATGTCAGTGA  476

seq1  ATCACGTTCAGTTTCCCTAAGAGTCTTGGTTATAGTCAGAGAAACCAGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGTTCAGTTTCCCTAAGAGTCTTGGTTATAGTCAGAGAAACCAGGA  526

seq1  AAATTAACTTAGAGCTGTGGCAGAGGAGAATAAGAGAGAAAATGCAGGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACTTAGAGCTGTGGCAGAGGAGAATAAGAGAGAAAATGCAGGAT  576

seq1  GTAGGTGGTTACTGTACTCCAAGTCTGTTTTCCATTGCTAGGATAAATCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGGTTACTGTACTCCAAGTCTGTTTTCCATTGCTAGGATAAATCA  626

seq1  ACATCAGCTTAGCTGTTTCAAACAAAGCCCACTTATCTCACAGTCCTGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCTTAGCTGTTTCAAACAAAGCCCACTTATCTCACAGTCCTGCA  676

seq1  GATCAGTGGGCCAGTCCCAGATGCCTAAATTTTCTTCAGAATCTCAAGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGGGCCAGTCCCAGATGCCTAAATTTTCTTCAGAATCTCAAGGG  726

seq1  GCTAAAATCAAAGCATCCAAGAAAGGACTCTGGTGCATTCTTATTTGGAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATCAAAGCATCCAAGAAAGGACTCTGGTGCATTCTTATTTGGAC  776

seq1  CTCAGTGTCCTGTGATCTGTAGTACTGATGTCTCCATTTCACTGTTCAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTCCTGTGATCTGTAGTACTGATGTCTCCATTTCACTGTTCAGC  826

seq1  TGGGAATCCGCACATCCCAGAGACCAGTGTCATTCTTGGTTTGTGACTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCCGCACATCCCAGAGACCAGTGTCATTCTTGGTTTGTGACTCT  876

seq1  CAAGAATGGCTCCCAGCGTAGCAGTTTGTGAACACTCCTCTGACCCCTTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGGCTCCCAGCGTAGCAGTTTGTGAACACTCCTCTGACCCCTTC  926

seq1  CTCTGTGAACAGCTGGGGAAAAACTCTTTGCTTCTGAAGATTTCTTTGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAACAGCTGGGGAAAAACTCTTTGCTTCTGAAGATTTCTTTGAT  976

seq1  TTGCTCAGGCCTACCCCAGATAGTCTCTCTCTGCTCTATACTATAACATC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGGCCTACCCCAGATAGTCTCTCTCTGCTCTATACTATAACATC  1026

seq1  ACCAAAGGGATACCTATCCCTTCCTATTCTTAGGGAAGTTATTCTGCAGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGGATACCTATCCCTTCCTATTCTTAGGGAAGTTATTCTGCAGG  1076

seq1  GCAGGAGCAGAAGGCCGGAAAG  1117
      ||||||||||||||||||||||
seq2  GCAGGAGCAGAAGGCCGGAAAG  1098