BAC Information

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BAC

Clone NameB6Ng01-161C20
Chromosome1 (Build37)
Map Location 140,539,925 - 140,718,117
singlet/doubletdoublet
Overlap geneLOC545363, LOC667745
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7
Downstream geneLhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161C20.bB6Ng01-161C20.g
ACCDH954365DH954366
length1,1581,153
definitionDH954365|Mus musculus domesticus DNA, BAC clone: B6Ng01-161C20, 5' end.DH954366|Mus musculus domesticus DNA, BAC clone: B6Ng01-161C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,539,925 - 140,541,081)(140,716,951 - 140,718,117)
sequence
gaattcaatagctgaggaaaaaaaagttatcaatatggtatcagtctctt
taaatcattttataattttatattctcaatattgtcctaccagtgtataa
gcacttatccactggaattgcacatctgggaaagaaaccaatgccatgac
tcactccttcccaatgtgagaagcacacacaaaggctcattttccttgca
actacaacgtaggtatgtgacctactttctgatcagactcacctactcaa
gtctcaccaactggtgctcagctaaggagatctgccaggctactgtgagc
atcagtggagcaggtatgtgagagagagtgggcctgaccattccctagtg
tggtcagatgtggttggttcctggcacagaaatggaatcagctggtgggc
agaagtcctttgctctactgcttaggagacagcatcaagggtttttaatc
agacctgttctgcaacacgcctttgaatatgtctcttaggaacaggattg
agcgccgccccccccccagcccccaaacactaagtcttcccaggactaaa
ttcttatcgttaactttccagtattattaccaacctcctttctgcttatg
aaagtcaaacttatcttccatggcttgcatatattatacttgatggatgc
aagcaactagaaatagtatttgcatctttgcttaattcttttggtgttgc
tgtaacaaatgccacatactgggtgattcatcaggaacaaacatttatct
cttacagttctggagaccgagaaaccatagatcaaagtacctgtaagttg
gcctcgagttcaaggtctggtgtgtactccagggatgaagaacaatgtag
agaagacagggaacctactcaaaacccctttaataggtgttattaatcat
tcatgaacagagcctttatcatcgaggccaccctcaaaactccaaattgc
ttggaactagatttttttgcttgcttgcttttttgaggcaggatctcact
atgtaaccttgctggtctgtactcactatgtagatcaggctgacctcaga
ttcacagaagatccacttgctcctgctctagagtgctggattaaaggcgg
gcgcaaccaaccagtttacactcctcgtatgttggagggacaagttgaga
accacagc
gaattccatttggagagattacgattaatacatcatagaattttccacca
cctttagttgatgtgttaacatcaattaccaccatttcctcttaaattct
ttgctttctgctttgagtttcttttcctattgcactacgaaaagtacctt
cttgaaacctttcctctttcacagcatcttccctatctttatttacatca
tctcgggagccagatctctttacccccaggactcgcttctcttgagaagt
tctttcccaaaggctttgtacctgctatttccccctgcagctctgctgac
tcagagccagcccaccagtcacagctaggagcatccctgaaaaccacatt
ctttcctaaaggttcaacttttcagtaatgactccaaatatatttcttgg
gacatttccatctctgctattgctggaagggcagcggaggtgaaattcaa
ctcctgttttctcttcagaaaatgtctgggctttttcatttccgtgaaca
gcatttctgaagacaagcatttctccataacattctccttttctcccatt
cttttaaaaaaccatttcttgtcacccacttaccagatcttattgacttt
tgatctttgacctaggtcacattctacctgtgtttgtccattcctctttg
tagggagcaaccagagtcttgaacagctgcatattttttgatatcagcag
tcatatcataagccttggccctatgagagtgacaaacccttctcaaggtg
agactcagaaggatgatgggaaggctgtcattgggcctgagtggaaacgt
tgactttgtgtgcagacaatgatctcacagctttctcccctctggatgtt
tgcagcctgaagcctgctcccctttggaagactactccaacctaggatta
gcctaaacctgcttcctgctggacacaatgacagctgtttataataacac
cactccctggtctctgaatggatgtcctccgcctcttgtcagctggtgtg
taaaccatggctccttccctgctcactgtggtaaccaactggggattctg
gaatgctgtggctactcaatcagagagtctcgggcacctaaatctcaagc
cttcctgtgtcaatggcctttacctgttatgcctaggtcaagtagacgga
ttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_140539925_140541081
seq2: B6Ng01-161C20.b_45_1202

seq1  GAATTCAATAGCTGAGGAAAAAAAAGTTATCAATATGGTATCAGTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGCTGAGGAAAAAAAAGTTATCAATATGGTATCAGTCTCTT  50

seq1  TAAATCATTTTATAATTTTATATTCTCAATATTGTCCTACCAGTGTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATTTTATAATTTTATATTCTCAATATTGTCCTACCAGTGTATAA  100

seq1  GCACTTATCCACTGGAATTGCACATCTGGGAAAGAAACCAATGCCATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTATCCACTGGAATTGCACATCTGGGAAAGAAACCAATGCCATGAC  150

seq1  TCACTCCTTCCCAATGTGAGAAGCACACACAAAGGCTCATTTTCCTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTTCCCAATGTGAGAAGCACACACAAAGGCTCATTTTCCTTGCA  200

seq1  ACTACAACGTAGGTATGTGACCTACTTTCTGATCAGACTCACCTACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAACGTAGGTATGTGACCTACTTTCTGATCAGACTCACCTACTCAA  250

seq1  GTCTCACCAACTGGTGCTCAGCTAAGGAGATCTGCCAGGCTACTGTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACCAACTGGTGCTCAGCTAAGGAGATCTGCCAGGCTACTGTGAGC  300

seq1  ATCAGTGGAGCAGGTATGTGAGAGAGAGTGGGCCTGACCATTCCCTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGGAGCAGGTATGTGAGAGAGAGTGGGCCTGACCATTCCCTAGTG  350

seq1  TGGTCAGATGTGGTTGGTTCCTGGCACAGAAATGGAATCAGCTGGTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGATGTGGTTGGTTCCTGGCACAGAAATGGAATCAGCTGGTGGGC  400

seq1  AGAAGTCCTTTGCTCTACTGCTTAGGAGACAGCATCAAGGGTTTTTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCTTTGCTCTACTGCTTAGGAGACAGCATCAAGGGTTTTTAATC  450

seq1  AGACCTGTTCTGCAACACGCCTTTGAATATGTCTCTTAGGAACAGGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTTCTGCAACACGCCTTTGAATATGTCTCTTAGGAACAGGATTG  500

seq1  AGCGCCGCCCCCCCCCCAGCCCCCAAACACTAAGTCTTCCCAGGACTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCGCCCCCCCCCCAGCCCCCAAACACTAAGTCTTCCCAGGACTAAA  550

seq1  TTCTTATCGTTAACTTTCCAGTATTATTACCAACCTCCTTTCTGCTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATCGTTAACTTTCCAGTATTATTACCAACCTCCTTTCTGCTTATG  600

seq1  AAAGTCAAACTTATCTTCCATGGCTTGCATATATTATACTTGATGGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAACTTATCTTCCATGGCTTGCATATATTATACTTGATGGATGC  650

seq1  AAGCAACTAGAAATAGTATTTGCATC-TTGCTTAATTCTTTTGGTGTTGC  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGCAACTAGAAATAGTATTTGCATCTTTGCTTAATTCTTTTGGTGTTGC  700

seq1  TGTAACAAATGCCACATACTGGGTGATTCATCAGGAACAAACATTTATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAATGCCACATACTGGGTGATTCATCAGGAACAAACATTTATCT  750

seq1  CTTACAGTTCTGGAGACCGAGAAACCATAGATCAAAGTACCTGTAAGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTTCTGGAGACCGAGAAACCATAGATCAAAGTACCTGTAAGTTG  800

seq1  GCCTCGAGTTCAAGGTCTGGTGTGTACTCCAGGGATGAAGAACAATGTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGAGTTCAAGGTCTGGTGTGTACTCCAGGGATGAAGAACAATGTAG  850

seq1  AGAAGACAGGGAACCTACTCAAAACCCCTTTAATAGTTG-TATTAATCAT  898
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  AGAAGACAGGGAACCTACTCAAAACCCCTTTAATAGGTGTTATTAATCAT  900

seq1  TCATGAACAGAGCCTTTATCATCGAGG-CACCCTCAAAAACTCCAAATTG  947
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TCATGAACAGAGCCTTTATCATCGAGGCCACCCTC-AAAACTCCAAATTG  949

seq1  CT--GGACTAGATTTTTTTTGCTTGCTTGCTTTTTTTGAGGCAGGATCTC  995
      ||  | |||||| ||||||||||||||||| |||||||||||||||||||
seq2  CTTGGAACTAGA-TTTTTTTGCTTGCTTGC-TTTTTTGAGGCAGGATCTC  997

seq1  ACTATGTAACCCTGGCTGGTCTGTAACTCACTATGTAGATCAGGCTGACC  1045
      ||||||||| ||| |||||||||| |||||||||||||||||||||||||
seq2  ACTATGTAA-CCTTGCTGGTCTGT-ACTCACTATGTAGATCAGGCTGACC  1045

seq1  TCAGATTCACAG-AGATCCACCTGCCTCTGCCTCTAGAGTGCTGGGATTA  1094
      |||||||||||| |||||||| |||  ||| |||||||||||| ||||||
seq2  TCAGATTCACAGAAGATCCACTTGCTCCTG-CTCTAGAGTGCT-GGATTA  1093

seq1  AAGGCGTGCGCCACCACACCCAGTTTACA--TCTCTGATGTTGGA-GGAC  1141
      |||||| |||| ||  || ||||||||||   |||  |||||||| ||||
seq2  AAGGCGGGCGCAAC--CAACCAGTTTACACTCCTCGTATGTTGGAGGGAC  1141

seq1  AAGTTGAGAA-CACAGC  1157
      |||||||||| ||||||
seq2  AAGTTGAGAACCACAGC  1158

seq1: chr1_140716951_140718117
seq2: B6Ng01-161C20.g_67_1219 (reverse)

seq1  GAATCCGTCTAACTTGGACATTGAGGGCATAAACAGATGAAAAGCACATG  50
      |||||||||| |||| ||| |    ||||| |||||  | ||||  ||| 
seq2  GAATCCGTCT-ACTT-GACCT---AGGCAT-AACAG--GTAAAGGCCATT  42

seq1  GACACAGAGAAAAGCTAGAAGAATTAGGTGGCCGAGGACTTCTCTGATGG  100
      |||||  || || ||| | ||| ||||||| |||| ||| |||||||| |
seq2  GACAC--AGGAAGGCTTG-AGATTTAGGTGCCCGA-GAC-TCTCTGATTG  87

seq1  AGTAGCAACAGCATCCCAGAAT-CCCAGTGTGTTTACACAGTTGAGCAGG  149
      |||||| ||||||| ||||||| ||||||  |||  ||||| ||||||||
seq2  AGTAGCCACAGCATTCCAGAATCCCCAGTTGGTTACCACAG-TGAGCAGG  136

seq1  GAAGGAGGCATGGTTTTTACACACAGCTGAACAAGGAGGC-GAGGACATC  198
      ||||||| ||||||||  |||| |||||| |||| ||||| |||||||||
seq2  GAAGGAGCCATGGTTTACACAC-CAGCTG-ACAA-GAGGCGGAGGACATC  183

seq1  CATACAGAGGAACAGGGAGGTGGTGTTATTATATACAGCTGTCATTGTGT  248
      ||| |||| || |||||| |||||||||||||| ||||||||||||||||
seq2  CATTCAGA-GACCAGGGA-GTGGTGTTATTATAAACAGCTGTCATTGTGT  231

seq1  ACAGCAGGAAGCAGGTTTA-GCTAAT-CTAGGTAGGAGTAGTC-TCCAAA  295
       |||||||||||||||||| |||||| |||||| ||||||||| ||||||
seq2  CCAGCAGGAAGCAGGTTTAGGCTAATCCTAGGTTGGAGTAGTCTTCCAAA  281

seq1  GGGGAGCAGGCTTCAGGCTGCAAACATCCAGA-GGGAGAAAGCTGTGGAG  344
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  GGGGAGCAGGCTTCAGGCTGCAAACATCCAGAGGGGAGAAAGCTGT-GAG  330

seq1  ATCATTGTCTGCACACAAAGTCAACGTTCCCACTCAGGCCCAATGACAGC  394
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCATTGTCTGCACACAAAGTCAACGTTTCCACTCAGGCCCAATGACAGC  380

seq1  CTTCCCATCATCCTTCTGAGTCTCACCTTGAGAAGGGTTTGTCACTCTCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATCATCCTTCTGAGTCTCACCTTGAGAAGGGTTTGTCACTCTCA  430

seq1  TAGGGCCAAGGCTTATGATATGACTGCTGATATCAAACAATATGCAGCTG  494
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGGGCCAAGGCTTATGATATGACTGCTGATATCAAAAAATATGCAGCTG  480

seq1  TTCAAGACTCTGGTTGCTCCCTACAAAGAGGAATGGACAAACACAGGTAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACTCTGGTTGCTCCCTACAAAGAGGAATGGACAAACACAGGTAG  530

seq1  AATGTGACCTAGGTCAAAGATCAAAAGTCAATAAGATCTGGTAAGTGGGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACCTAGGTCAAAGATCAAAAGTCAATAAGATCTGGTAAGTGGGT  580

seq1  GACAAGAAATGGTTTTTTAAAAGAATGGGAGAAAAGGAGAATGTTATGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAATGGTTTTTTAAAAGAATGGGAGAAAAGGAGAATGTTATGGA  630

seq1  GAAATGCTTGTCTTCAGAAATGCTGTTCACGGAAATGAAAAAGCCCAGAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTTGTCTTCAGAAATGCTGTTCACGGAAATGAAAAAGCCCAGAC  680

seq1  ATTTTCTGAAGAGAAAACAGGAGTTGAATTTCACCTCCGCTGCCCTTCCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGAAGAGAAAACAGGAGTTGAATTTCACCTCCGCTGCCCTTCCA  730

seq1  GCAATAGCAGAGATGGAAATGTCCCAAGAAATATATTTGGAGTCATTACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGCAGAGATGGAAATGTCCCAAGAAATATATTTGGAGTCATTACT  780

seq1  GAAAAGTTGAACCTTTAGGAAAGAATGTGGTTTTCAGGGATGCTCCTAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTGAACCTTTAGGAAAGAATGTGGTTTTCAGGGATGCTCCTAGC  830

seq1  TGTGACTGGTGGGCTGGCTCTGAGTCAGCAGAGCTGCAGGGGGAAATAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGGTGGGCTGGCTCTGAGTCAGCAGAGCTGCAGGGGGAAATAGC  880

seq1  AGGTACAAAGCCTTTGGGAAAGAACTTCTCAAGAGAAGCGAGTCCTGGGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAAAGCCTTTGGGAAAGAACTTCTCAAGAGAAGCGAGTCCTGGGG  930

seq1  GTAAAGAGATCTGGCTCCCGAGATGATGTAAATAAAGATAGGGAAGATGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGATCTGGCTCCCGAGATGATGTAAATAAAGATAGGGAAGATGC  980

seq1  TGTGAAAGAGGAAAGGTTTCAAGAAGGTACTTTTCGTAGTGCAATAGGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGAGGAAAGGTTTCAAGAAGGTACTTTTCGTAGTGCAATAGGAA  1030

seq1  AAGAAACTCAAAGCAGAAAGCAAAGAATTTAAGAGGAAATGGTGGTAATT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTCAAAGCAGAAAGCAAAGAATTTAAGAGGAAATGGTGGTAATT  1080

seq1  GATGTTAACACATCAACTAAAGGTGGTGGAAAATTCTATGATGTATTAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAACACATCAACTAAAGGTGGTGGAAAATTCTATGATGTATTAAT  1130

seq1  CGTAATCTCTCCAAATGGAATTC  1167
      |||||||||||||||||||||||
seq2  CGTAATCTCTCCAAATGGAATTC  1153