BAC Information

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BAC

Clone NameB6Ng01-161E17
Chromosome1 (Build37)
Map Location 23,793,167 - 23,922,355
singlet/doubletdoublet
Overlap geneB3gat2, Smap1
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream gene1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161E17.bB6Ng01-161E17.g
ACCDH954450DH954451
length1,0871,174
definitionDH954450|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E17, 5' end.DH954451|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,921,247 - 23,922,355)(23,793,167 - 23,794,356)
sequence
gaattcaggtcattgggtttggtggttggtgcctttactctgagccatct
tgctggtcctacaggacctccttttactcttcatttaaaagaaagcatct
ataggttaatatctaggccatgtgtatttatcagtattaatattgtctgc
ttgacatagctagagctctgtttaactatcatagtgtttagctgccatat
tagagaacctatctaaagttttattttatttacaggttttattaagctat
cataattatgtgccagtattatgttcacatatgttgaatggtaaatgtga
ggcttttgagtgcagcaaggagagagaattatagactttctagcaaactt
tcatagtctgttctctacccactcaagcaatttttagtctaagtttcaca
aggggtccaagtgattgatgataaaacttcagatgtctcatcttgatctt
ttgtaaagtgcatatttcaaagacaccccccccccagatcaaaaagaaat
gaggagaattttgtggacagtcatattcaggatagttttatcttctgata
ttagaaaattcctaagaattagagttcagcattgatgtgtttagttcatg
tatttgtgctcctgaaaattacttgtggtgtagactggagatattatcag
aaaagaaactgagcacattttagatctaaagtgtgccctggtgcacccac
tttgtgttacaaccgtgtactgtgcgcctcgcttttggacgtaggttttt
ataaggggtggtgctgtaggtgtatttaaaacggcataggacagcgatga
aatagttaaaaccactttaaaagtgtatgcattgaaaattattgcaccgt
ctttgcacattatttatgtagaaagtctaagattttattaaaagaaccat
taaaaccaagaattgagtttattcagttgtaggagtcaaagtgagtatag
aaaccatatatgctagcagcaatattttgagtgaaaattctgtgatggtg
cataagtataaacttcgggatgatttaataacggttcaaggcttgtctcc
tagaactacaggaactgttgcaaagatgacagatacg
gaattcactcttgcacctgcgtacaaggcttgtttactagttaggcacag
cggaggcccgcgccatcttataatggcgattgctcgcggcacacacggct
ctcctcagagattactggcagcacgcatgcaattgctcgcagcacgtaac
ggctctccacacgtctgtattcccaaagtggtctccatctattgcaaaac
aaccccaaaaaacaaacaaacaaacaaaaaactttctttaatgaaggcta
aagactgtacttatatgtgagcttaagaatccatgtttataaatttttgt
tagattttttttttttgagacaagatctccctatgtagtcctggctatcc
tggagttcacagtgtagaccaggctggccttgaacccacagagatcctcc
tgcctctccctcccaagtgttaggattgaagtgccaaagtacatataatt
tcttacactgccacactatattccataatggctctagccacttccatccc
cacaagcagagaggagggtgatgtgtcctcaccctagacaacactggctt
ttggataagtgtcaatcaaaaaagtaagccataacaatctcttaattttg
aaattcatgtttcctttttcatgtgtgcttctatagcactcccgatggag
tcagcactagtctggcatacagttttcttcctagagctgtttatttttag
ctcttgttttttaaagtaggttctacgggcccagctctgtcccttttgta
aatgaatacctgtgttttcacagctccatcagttgaaaacattcttcctt
actcttttccttatcttgaaaataactgacttgggtcaaaagaaaaacca
agcactaagtcacgcgtgtgcaggtgtggtttttgtgctccttgcacagt
tcttagtatacagcttttgtagtaagtttgtcttgggaagggccagccct
acaatttagcttctttctcagattgtcttgtagctcaaggaggcttataa
attctttatgattatatttgttttttttttagtacccgttacgatttttc
tcaggatcaacttagatcatacttgacaacttcgaacgaaatatgctttc
cttattgagtcctgggacctatgaaggcagagctttcattatgaatctac
cgttcttagccatattgttaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23921247_23922355
seq2: B6Ng01-161E17.b_45_1131 (reverse)

seq1  CGTATCTGTTCATTCTTTTGCAACAGTCTCTTGTAAGTTCTTAGAGTACA  50
      |||||||| ||||   ||||||||||| || ||| ||||||  ||| |||
seq2  CGTATCTG-TCAT--CTTTGCAACAGT-TCCTGT-AGTTCTAGGAG-ACA  44

seq1  AGCCTTGCACACGTTTTATTAAATTCATCCCGAAGTTTTTATACTTTATG  100
      ||||||| || ||  |||||||| |||||||||||  ||||||| |||||
seq2  AGCCTTGAAC-CG--TTATTAAA-TCATCCCGAAG--TTTATAC-TTATG  87

seq1  CCACCATCACAGAAATTTTTCAACTTCAAAATATTTGCTGCTAGCATATA  150
       |||||||||||||  ||||||   |||||||| ||||||||||||||||
seq2  -CACCATCACAGAA--TTTTCA--CTCAAAATA-TTGCTGCTAGCATATA  131

seq1  TGGTTTTCTATACTCACTTTGACTCCTACAACCTGAATAAACTCAATTCT  200
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGG-TTTCTATACTCACTTTGACTCCTACAA-CTGAATAAACTCAATTCT  179

seq1  TGGTTTTAATGGTTCTTTTTAATAAATTCTTAGACTTTTCTACATAAAT-  249
      ||||||||||||||| |||||||||| |||||||| ||||||||||||| 
seq2  TGGTTTTAATGGTTC-TTTTAATAAAATCTTAGAC-TTTCTACATAAATA  227

seq1  ATGTGCAAAGACGGTGCAATAATTTTTCAATGCATACACTTTTTAAGTGG  299
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  ATGTGCAAAGACGGTGCAATAA-TTTTCAATGCATACACTTTTAAAGTGG  276

seq1  TTTTAACTATTTCATCGCTGTCCTATGCCGTTTTAAATACACCTACAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTATTTCATCGCTGTCCTATGCCGTTTTAAATACACCTACAGCA  326

seq1  CCACCCCTTATAAAAACCTACGTCCAAAAGCGAGGCGCACAGTACACGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTTATAAAAACCTACGTCCAAAAGCGAGGCGCACAGTACACGGT  376

seq1  TGTAACAC-AAGTGGGTGCACCAGGGCACACTTTAGATCTAAAATGTGCT  448
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACAAAGTGGGTGCACCAGGGCACACTTTAGATCTAAAATGTGCT  426

seq1  CAGTTTCTTTTCTGATAATATCTCCAGTCTACACCACAAGTAATTTTCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTTTCTGATAATATCTCCAGTCTACACCACAAGTAATTTTCAG  476

seq1  GAGCACAAATACATGAACTAAACACATCAATGCTGAACTCTAATTCTTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAAATACATGAACTAAACACATCAATGCTGAACTCTAATTCTTAG  526

seq1  GAATTTTCTAATATCAGAAGATAAAACTATCCTGAATATGACTGTCCACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCTAATATCAGAAGATAAAACTATCCTGAATATGACTGTCCACA  576

seq1  AAATTCTCCTCATTTCTTTTTGATCTGGGGGGGGGGTGTCTTTGAAATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCCTCATTTCTTTTTGATCTGGGGGGGGGGTGTCTTTGAAATAT  626

seq1  GCACTTTACAAAAGATCAAGATGAGACATCTGAAGTTTTATCATCAATCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTACAAAAGATCAAGATGAGACATCTGAAGTTTTATCATCAATCA  676

seq1  CTTGGACCCCTTGTGAAACTTAGACTAAAAATTGCTTGAGTGGGTAGAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACCCCTTGTGAAACTTAGACTAAAAATTGCTTGAGTGGGTAGAGA  726

seq1  ACAGACTATGAAAGTTTGCTAGAAAGTCTATAATTCTCTCTCCTTGCTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTATGAAAGTTTGCTAGAAAGTCTATAATTCTCTCTCCTTGCTGC  776

seq1  ACTCAAAAGCCTCACATTTACCATTCAACATATGTGAACATAATACTGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAAGCCTCACATTTACCATTCAACATATGTGAACATAATACTGGC  826

seq1  ACATAATTATGATAGCTTAATAAAACCTGTAAATAAAATAAAACTTTAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTATGATAGCTTAATAAAACCTGTAAATAAAATAAAACTTTAGA  876

seq1  TAGGTTCTCTAATATGGCAGCTAAACACTATGATAGTTAAACAGAGCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTCTAATATGGCAGCTAAACACTATGATAGTTAAACAGAGCTCT  926

seq1  AGCTATGTCAAGCAGACAATATTAATACTGATAAATACACATGGCCTAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTCAAGCAGACAATATTAATACTGATAAATACACATGGCCTAGA  976

seq1  TATTAACCTATAGATGCTTTCTTTTAAATGAAGAGTAAAAGGAGGTCCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACCTATAGATGCTTTCTTTTAAATGAAGAGTAAAAGGAGGTCCTG  1026

seq1  TAGGACCAGCAAGATGGCTCAGAGTAAAGGCACCAACCACCAAACCCAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCAGCAAGATGGCTCAGAGTAAAGGCACCAACCACCAAACCCAAT  1076

seq1  GACCTGAATTC  1109
      |||||||||||
seq2  GACCTGAATTC  1087

seq1: chr1_23793167_23794356
seq2: B6Ng01-161E17.g_67_1240

seq1  GAATTCACTCTTGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAG  50

seq1  CGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCT  100

seq1  CTCCTCAGAGATTACTGGCAGCACGCATGCAATTGCTCGCAGCACGTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAGATTACTGGCAGCACGCATGCAATTGCTCGCAGCACGTAAC  150

seq1  GGCTCTCCACACGTCTGTATTCCCAAAGTGGTCTCCATCTATTGCAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCACACGTCTGTATTCCCAAAGTGGTCTCCATCTATTGCAAAAC  200

seq1  AACCCCAAAAAACAAACAAACAAACAAAAAACTTTCTTTAATGAAGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAAAAACAAACAAACAAACAAAAAACTTTCTTTAATGAAGGCTA  250

seq1  AAGACTGTACTTATATGTGAGCTTAAGAATCCATGTTTATAAATTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTACTTATATGTGAGCTTAAGAATCCATGTTTATAAATTTTTGT  300

seq1  TAGATTTTTTTTTTTTGAGACAAGATCTCCCTATGTAGTCCTGGCTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTTTTTTTTGAGACAAGATCTCCCTATGTAGTCCTGGCTATCC  350

seq1  TGGAGTTCACAGTGTAGACCAGGCTGGCCTTGAACCCACAGAGATCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTCACAGTGTAGACCAGGCTGGCCTTGAACCCACAGAGATCCTCC  400

seq1  TGCCTCTCCCTCCCAAGTGTTAGGATTGAAGTGCCAAAGTACATATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCCCTCCCAAGTGTTAGGATTGAAGTGCCAAAGTACATATAATT  450

seq1  TCTTACACTGCCACACTATATTCCATAATGGCTCTAGCCACTTCCATCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACACTGCCACACTATATTCCATAATGGCTCTAGCCACTTCCATCCC  500

seq1  CACAAGCAGAGAGGAGGGTGATGTGTCCTCACCCTAGACAACACTGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCAGAGAGGAGGGTGATGTGTCCTCACCCTAGACAACACTGGCTT  550

seq1  TTGGATAAGTGTCAATCAAAAAAGTAAGCCATAACAATCTCTTAATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAAGTGTCAATCAAAAAAGTAAGCCATAACAATCTCTTAATTTTG  600

seq1  AAATTCATGTTTCCTTTTTCATGTGTGCTTCTATAGCACTCCCGATGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATGTTTCCTTTTTCATGTGTGCTTCTATAGCACTCCCGATGGAG  650

seq1  TCAGCACTAGTCTGGCATACAGTTTTCTTCCTAGAGCTGTTTATTTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTAGTCTGGCATACAGTTTTCTTCCTAGAGCTGTTTATTTTTAG  700

seq1  CTCTTG-TTTATAAAGTAGGTTCTACGGGCCCAGCTCTGTCCC-TTTGTA  748
      |||||| ||| |||||||||||||||||||||||||||||||| ||||||
seq2  CTCTTGTTTTTTAAAGTAGGTTCTACGGGCCCAGCTCTGTCCCTTTTGTA  750

seq1  AATGAATACCTGTGTTTTCACAGCTCCATCAGTTGAAAACATTCTTCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATACCTGTGTTTTCACAGCTCCATCAGTTGAAAACATTCTTCCTT  800

seq1  ACTCTTTGCCTTATCTTGAAAATAACTGACTT-GGTCAAAAGAAAAACCA  847
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  ACTCTTTTCCTTATCTTGAAAATAACTGACTTGGGTCAAAAGAAAAACCA  850

seq1  AGCACTAAGTCACGCGTGTGCAGGTGTGTTTTTTGTGCTCCTTGCACAGT  897
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCACTAAGTCACGCGTGTGCAGGTGTGGTTTTTGTGCTCCTTGCACAGT  900

seq1  TCTTAGTAATACAGC-TTTGTAGTAAGTTTGTCTTGGGAAGGGCCAGCCC  946
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTAGT-ATACAGCTTTTGTAGTAAGTTTGTCTTGGGAAGGGCCAGCCC  949

seq1  TACAATTTAGC-TCTTTCTCAGGATTGTCCTTGTAGCTCAAAGAGGCTTA  995
      ||||||||||| ||||||||| |||||| |||||||||||| ||||||||
seq2  TACAATTTAGCTTCTTTCTCA-GATTGT-CTTGTAGCTCAAGGAGGCTTA  997

seq1  T-AATTCTTTATGAATTATTAATCTGTTTTTTTTTTTAGTACACGTTACG  1044
      | ||||||||||| |||||  || || ||||||||||||||| |||||||
seq2  TAAATTCTTTATG-ATTAT--ATTTG-TTTTTTTTTTAGTACCCGTTACG  1043

seq1  ATTTTTCTCAGGGATCACACTAGATTCATAC-TGACAACTTCGGACAGAA  1093
      |||||||||| ||||||   |||| |||||| ||||||||||| || |||
seq2  ATTTTTCTCA-GGATCAACTTAGA-TCATACTTGACAACTTCGAAC-GAA  1090

seq1  TTATGTTTTCACATTATGAAGTCCTGTGAGCTATGAATGCGAGATGCCTT  1143
       |||| |||  | ||||  ||||||| || ||||||| || |||   |||
seq2  ATATGCTTT--CCTTATTGAGTCCTGGGACCTATGAAGGC-AGA--GCTT  1135

seq1  TCCATTTATGATTTCTTTACTGTCTCTTAGCCATATTTGTTTAGGTT  1190
      ||   ||||||    | ||| || |||||||||||||   |||||||
seq2  TC--ATTATGA---ATCTACCGT-TCTTAGCCATATT--GTTAGGTT  1174