BAC Information

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BAC

Clone NameB6Ng01-161G02
Chromosome1 (Build37)
Map Location 11,189,592 - 11,355,250
singlet/doubletdoublet
Overlap geneC030045D06Rik
Upstream geneArfgef1, Cpa6, LOC433271
Downstream geneA830018L16Rik, LOC665262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161G02.bB6Ng01-161G02.g
ACCDH954507DH954508
length9661,097
definitionDH954507|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G02, 5' end.DH954508|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,354,701 - 11,355,250)(11,189,592 - 11,190,717)
sequence
gaattcatcaggtgagggtctctatttttacattatttggcatctggaaa
ggtaaactttatccagtggaaaaaaaatatgaacagcatgtaaatgatat
ctaattatcagtaattgaatggtcaaaggaggtcaaaaggatacaaattg
gaaaggatgaattcaaaatatcactatttgcagatgatatgatagtatac
ttgagtgaccccaaaaatttcaccagagactcctacagctgataaacaat
ttaagcaaattagctggatataaaattcacttaaaaaaatcagtagcttt
cctatactcaaaggataaatggtctgagaaagaaattatggaggccagac
cctttacaatagtcacaaacaatataaaatatcatggtatgactctaacc
aaacaagtgaaaaaatctgtacgacaagaacttcgaagtttctgaagaaa
gaagtcaaagaagacttcagaagatggaaaaatcatccatgcttgtggac
tggcaggattaatataataaaaatgaccatcgttctgaaagcaatataca
gattcagtgcaatactcatcaaaattccaactcagttctacattgagtta
gaaagagcaaatctgaaattcatttgggataagaaaaaacccaggatagt
gaaaactattctcaacaataaaagaacttctaggggaaatcacagtccct
gacctcaaggtgagcaatagtgataaaaaacaaaacaaacaaaaaaaatg
catggtattggtacgatgacaagcaggtagatcagtggactagaattaaa
gacccagaaatgaacccacacacctatggtcacttgatttttgaaaaaga
agctaaaaccatccagtggaaaaaaaaagacagcattttcataaatagtg
ctggttcaactgtcagtcacatatagagatgcaaactgaatgcaacaaag
ctcagtccatgtggat
gaattcactagctctaagttgttggctcactttctagtaacatcatggtt
tctttcatgttgaatgagttttaagtgtaaccagggagctgttggttaat
gctggggtgtgtgtgccactcctgctccatgtgggtggtggtctctccaa
cagtttttgttttgaatttctttttgagacagggtctcactacatgtccc
tggcattctaggaactcactatatagaccaggttgctcatgaactcacag
aaattgtactgggattaaaagcaccatacctggctactacaataaagctg
cctttgtgttcttttccatcacagacagtgaaacccaactccggagagac
atggttttctgtcaaagtcttgtggccactgtctgtgccttctctgagca
gctcatggctgccttaaaccagatgtttgacaacagcaaggaaaatgaaa
tggagacttgtgaagccagcaggaggtggctggaccagattgcaaatgct
ggtgtgctttttcacttccagtcacttctgtcaccaaatttggtaagtga
ccttatgactgccattgcctgcatctgcctgcacagtcacgttgttacca
aatatgaaggagttggtcattttagagactttaaagggaaaaattttccg
tcaccatttaggctttaataagaatatagaatgtatttcttcttttctga
ttttatctcttgtctctgactgataaaagctgggaagaatttcattgtta
gttattcttagatcctcaagcattggctggaataagtcttaagaggaaag
tgcattcttataagtccactcagtccagaaaataacgacttcccccatac
tagaactcccaaggatgctgtaatctggggctgatactcaggagcagcta
ctgtctggcagtctgtttaaactttgcctgtgctacacagttcagttgtt
ctttgatgagagttccagtaacagttgaaacagcatgtacagtaaaatgc
catgcttagcatgataagatgaaaaatattctgaatataagactttgaca
ctttacggagactttgtgaatttgtgagttatgccaaatgtccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_11354701_11355250
seq2: B6Ng01-161G02.b_48_597 (reverse)

seq1  TGTATATTGCTTTCAGAACGATGGTCATTTTTATTATATTAATCCTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTGCTTTCAGAACGATGGTCATTTTTATTATATTAATCCTGCCA  50

seq1  GTCCACAAGCATGGATGATTTTTCCATCTTCTGAAGTCTTCTTTGACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAAGCATGGATGATTTTTCCATCTTCTGAAGTCTTCTTTGACTTC  100

seq1  TTTCTTCAGAAACTTCGAAGTTCTTGTCGTACAGATTTTTTCACTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAGAAACTTCGAAGTTCTTGTCGTACAGATTTTTTCACTTGTTT  150

seq1  GGTTAGAGTCATACCATGATATTTTATATTGTTTGTGACTATTGTAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAGTCATACCATGATATTTTATATTGTTTGTGACTATTGTAAAGG  200

seq1  GTCTGGCCTCCATAATTTCTTTCTCAGACCATTTATCCTTTGAGTATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCCTCCATAATTTCTTTCTCAGACCATTTATCCTTTGAGTATAGG  250

seq1  AAAGCTACTGATTTTTTTAAGTGAATTTTATATCCAGCTAATTTGCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACTGATTTTTTTAAGTGAATTTTATATCCAGCTAATTTGCTTAA  300

seq1  ATTGTTTATCAGCTGTAGGAGTCTCTGGTGAAATTTTTGGGGTCACTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTATCAGCTGTAGGAGTCTCTGGTGAAATTTTTGGGGTCACTCAA  350

seq1  GTATACTATCATATCATCTGCAAATAGTGATATTTTGAATTCATCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTATCATATCATCTGCAAATAGTGATATTTTGAATTCATCCTTTC  400

seq1  CAATTTGTATCCTTTTGACCTCCTTTGACCATTCAATTACTGATAATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGTATCCTTTTGACCTCCTTTGACCATTCAATTACTGATAATTAG  450

seq1  ATATCATTTACATGCTGTTCATATTTTTTTTCCACTGGATAAAGTTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTTACATGCTGTTCATATTTTTTTTCCACTGGATAAAGTTTACC  500

seq1  TTTCCAGATGCCAAATAATGTAAAAATAGAGACCCTCACCTGATGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGATGCCAAATAATGTAAAAATAGAGACCCTCACCTGATGAATTC  550

seq1: chr1_11189592_11190717
seq2: B6Ng01-161G02.g_69_1165

seq1  GAATTCACTAGCTCTAAGTTGTTGGCTCACTTTCTAGTAACATCATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGCTCTAAGTTGTTGGCTCACTTTCTAGTAACATCATGGTT  50

seq1  TCTTTCATGTTGAATGAGTTTTAAGTGTAACCAGGGAGCTGTTGGTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATGTTGAATGAGTTTTAAGTGTAACCAGGGAGCTGTTGGTTAAT  100

seq1  GCTGGGGTGTGTGTGCCACTCCTGCTCCATGTGGGTGGTGGTCTCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTGTGTGTGCCACTCCTGCTCCATGTGGGTGGTGGTCTCTCCAA  150

seq1  CAGTTTTTGTTTTGAATTTCTTTTTGAGACAGGGTCTCACTACATGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTGTTTTGAATTTCTTTTTGAGACAGGGTCTCACTACATGTCCC  200

seq1  TGGCATTCTAGGAACTCACTATATAGACCAGGTTGCTCATGAACTCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCTAGGAACTCACTATATAGACCAGGTTGCTCATGAACTCACAG  250

seq1  AAATTGTACTGGGATTAAAAGCACCATACCTGGCTACTACAATAAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTACTGGGATTAAAAGCACCATACCTGGCTACTACAATAAAGCTG  300

seq1  CCTTTGTGTTCTTTTCCATCACAGACAGTGAAACCCAACTCCGGAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTTCTTTTCCATCACAGACAGTGAAACCCAACTCCGGAGAGAC  350

seq1  ATGGTTTTCTGTCAAAGTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTCTGTCAAAGTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCA  400

seq1  GCTCATGGCTGCCTTAAACCAGATGTTTGACAACAGCAAGGAAAATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGCTGCCTTAAACCAGATGTTTGACAACAGCAAGGAAAATGAAA  450

seq1  TGGAGACTTGTGAAGCCAGCAGGAGGTGGCTGGACCAGATTGCAAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTTGTGAAGCCAGCAGGAGGTGGCTGGACCAGATTGCAAATGCT  500

seq1  GGTGTGCTTTTTCACTTCCAGTCACTTCTGTCACCAAATTTGGTAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTTTTTCACTTCCAGTCACTTCTGTCACCAAATTTGGTAAGTGA  550

seq1  CCTTATGACTGCCATTGCCTGCATCTGCCTGCACAGTCACGTTGTTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGACTGCCATTGCCTGCATCTGCCTGCACAGTCACGTTGTTACCA  600

seq1  AATATGAAGGAGTTGGTCATTTTAGAGACTTTAAAGGGAAAAATTTTCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGGAGTTGGTCATTTTAGAGACTTTAAAGGGAAAAATTTTCCG  650

seq1  TCACCATTTAGGCTTTAATAAGAATATAGAATGTATTTCTTCTTTTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTTAGGCTTTAATAAGAATATAGAATGTATTTCTTCTTTTCTGA  700

seq1  TTTTATCTCTTGTCTCTGACTGATAAAAGCTGGGAAGAATTTCATTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTCTTGTCTCTGACTGATAAAAGCTGGGAAGAATTTCATTGTTA  750

seq1  GTTATTCTTAGATCCTCAAGCATTGGCTGGAATAAGTCTTAAGAGGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTTAGATCCTCAAGCATTGGCTGGAATAAGTCTTAAGAGGAAAG  800

seq1  TGCATTCTTATAAGTCCACTCAGTCCAG-AAATAACGACTTCCCCCATAC  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCATTCTTATAAGTCCACTCAGTCCAGAAAATAACGACTTCCCCCATAC  850

seq1  TAGAACTCCCAAGGATGCTGTAATCTGGGGCTGATAACTCAGGGAGCAGC  899
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  TAGAACTCCCAAGGATGCTGTAATCTGGGGCTGAT-ACTCA-GGAGCAGC  898

seq1  TACTGTCTGGCAGTCTGTTTAAACTTTGCCTGTGCTACACAGTTTCAGTT  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TACTGTCTGGCAGTCTGTTTAAACTTTGCCTGTGCTACACAG-TTCAGTT  947

seq1  GTTCCTTTGAAGGAGAGTTTTCCAGTAACAGTATGAAAACCAGCATGTAC  999
      ||| ||||| | |||||  ||||||||||||| |||||  ||||||||||
seq2  GTT-CTTTG-ATGAGAG--TTCCAGTAACAGT-TGAAA--CAGCATGTAC  990

seq1  AGTAAAAAATGCCATGCTTAAGCATGGATAAAGATGAAAAAAAATTCTTG  1049
      |||  |||||||||||||| ||||| ||| |||||| ||||| |||||  
seq2  AGT--AAAATGCCATGCTT-AGCAT-GAT-AAGATG-AAAAATATTCT--  1032

seq1  AAATATAAGGAACTTTGGACACTTTCACGGAGACTTTGTGTAGTTTTTGT  1099
       ||||||||  ||||| |||||||| |||||||||||||| |   |||||
seq2  GAATATAAG--ACTTT-GACACTTT-ACGGAGACTTTGTGAA---TTTGT  1075

seq1  GATGTCCTAGTGCACAAATGTCTACTT  1126
      || ||  || ||| |||||||| ||||
seq2  GA-GT--TA-TGC-CAAATGTCCACTT  1097