BAC Information

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BAC

Clone NameB6Ng01-161P18
Chromosome1 (Build37)
Map Location 149,079,561 - 149,080,684
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161P18.bB6Ng01-161P18.g
ACCDH954947DH954948
length1,098698
definitionDH954947|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P18, 5' end.DH954948|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaagatcagttatctggacaaaaagacccataagatatgtatga
tgcatgtatctgttgtacttcttttataattcagctcagtattggtagaa
ctggaccatatttcttttcattatattttatctcatgaaacatcattgca
cagttcaaaaaaacatacttacctacatataagttattaaaaatttactt
cttttaaaattaatttgcatggataaatcatattttgactaaaatttcaa
ttttcactagcaattttttatctactatttcatttcactcatatgttact
gtcttcctatgtcttacaacatacaattggatgaaaattaatttatgtaa
ctaattgctttaactatttgtcttaatttaaatatctagagtatgtcttg
taaaatttagggctgtatttgacaagaaatatccataaatatagtaaaat
tgtacccactgacagtgttttactttactatctctgagtaatgaaactgt
acattttattatacccctgtgcacacagcacactatttctaaaatatgtt
ctccatttgacaagataaatatgtcattcaagatgtattgtaatttataa
gagaaaatggatgtcatttgatgtaaactctaatgtgttttgattaatag
caatttctcttttgagcatgtgtcattggctattactgtttctgtcttct
gttttctttttattttgccattaactttccataggtaagttaaaatgtaa
tcattgcttgatagaattacctggaatcttagagaggagagttcatagtt
tttcaatttgttacttacatttaaaattgttgttaaaatactgatataaa
agttattaaacaatagttgttgatgacattttttttcagtctccagtgtg
tttaggaatcaccatattcctagagctcagagatgagtctatctaggcta
tctctgaccctgtgaagaccagatcactatcagcaccccacaggtgacta
catatctatccagatcttgcatagactcccctctcatcctctgtgggtgc
tagggatcatagtgcatatcccgcagccgaacaaatcctcacatataa

gaattcctttattcaaggaatattctggattgaatattgtgagatgggag
gatgtcccattccctccactggtggttgtgcctatctactagaggtggtc
tccacaggttctctcaatgtccttgttgagtactgggaacctcttgcttt
cctggtaacccctacctccccatccccgctgctacatatttctgttcaat
ttcctgaccctctctacttctctcctgtctcttcctatggattgtggtct
atatgcaggtgagagcaggcacaaaataaggtgagagcctgtaattggga
agtgaaaaagaaaggttggccgtgaattttagagatgaggaccagagagg
tggagagagggagaagaagggaaggagaggaagagataaaatggatctta
taggagaagaggaggcagaaccaaccacacagtcctgggagccataagta
ttgggatttcttagatgattaaatttataattagggtggatctgtcccat
ctagatgtgtatcttgtgtttatatcaattgagttttgaattcattgtgc
gggcgttaagtgagttgaaaatttaccaaaagtaaattctgactgataaa
ttacaagcctccagagttttagattttaccagggctgggaatgtgagcag
aatccacagcaagagaattgtgagatgggtggtcgctgcatggggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149079561_149080684
seq2: B6Ng01-161P18.b_47_1144 (reverse)

seq1  TTATATGTGATGATTTTGTCTGGCTGCGTGTATATGCACTATGTGAATCC  50
      |||||||||| || |||||  ||||||| | ||||||||||||   ||||
seq2  TTATATGTGAGGA-TTTGTTCGGCTGCG-GGATATGCACTATG---ATCC  45

seq1  CTAGCACCCACAGAGGATGGAAGAGGGAGTCTAATGCCAAAGATCTGGAA  100
      |||||||||||||||||||  || |||||||| ||||  |||||||||| 
seq2  CTAGCACCCACAGAGGATGAGAG-GGGAGTCT-ATGC--AAGATCTGGA-  90

seq1  TTAAGAATAATTGTAAGTCACCCTGT-GGGTGCTGATAAGTGATCCTGGT  149
       ||   |||  ||| ||||| ||||| |||||||||| |||||| |||||
seq2  -TA--GATA--TGT-AGTCA-CCTGTGGGGTGCTGAT-AGTGAT-CTGGT  131

seq1  TCTTTCACAGGGTCAGAGAATAGCCTTAAGATTAGACTCATCTCTTGAGC  199
         ||||||||||||||| |||||||  ||| |||||||||||| |||||
seq2  --CTTCACAGGGTCAGAG-ATAGCCT--AGA-TAGACTCATCTC-TGAGC  174

seq1  TCTAGGAATATGGTGATTCCTAAACACACTGGAGACTGAAAAAAAAATGT  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTAGGAATATGGTGATTCCTAAACACACTGGAGACTG-AAAAAAAATGT  223

seq1  CATCAACAACTATTGTTTAATAACTTTTATATCAGTATTTTAACAACAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACAACTATTGTTTAATAACTTTTATATCAGTATTTTAACAACAAT  273

seq1  TTTAAATGTAAGTAACAAATTGAAAAACTATGAACTCTCCTCTCTAAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTAAGTAACAAATTGAAAAACTATGAACTCTCCTCTCTAAGAT  323

seq1  TCCAGGTAATTCTATCAAGCAATGATTACATTTTAACTTACCTATGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTAATTCTATCAAGCAATGATTACATTTTAACTTACCTATGGAAA  373

seq1  GTTAATGGCAAAATAAAAAGAAAACAGAAGACAGAAACAGTAATAGCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGCAAAATAAAAAGAAAACAGAAGACAGAAACAGTAATAGCCAA  423

seq1  TGACACATGCTCAAAAGAGAAATTGCTATTAATCAAAACACATTAGAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATGCTCAAAAGAGAAATTGCTATTAATCAAAACACATTAGAGTT  473

seq1  TACATCAAATGACATCCATTTTCTCTTATAAATTACAATACATCTTGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAAATGACATCCATTTTCTCTTATAAATTACAATACATCTTGAAT  523

seq1  GACATATTTATCTTGTCAAATGGAGAACATATTTTAGAAATAGTGTGCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTTATCTTGTCAAATGGAGAACATATTTTAGAAATAGTGTGCTG  573

seq1  TGTGCACAGGGGTATAATAAAATGTACAGTTTCATTACTCAGAGATAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACAGGGGTATAATAAAATGTACAGTTTCATTACTCAGAGATAGTA  623

seq1  AAGTAAAACACTGTCAGTGGGTACAATTTTACTATATTTATGGATATTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAACACTGTCAGTGGGTACAATTTTACTATATTTATGGATATTTC  673

seq1  TTGTCAAATACAGCCCTAAATTTTACAAGACATACTCTAGATATTTAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAATACAGCCCTAAATTTTACAAGACATACTCTAGATATTTAAAT  723

seq1  TAAGACAAATAGTTAAAGCAATTAGTTACATAAATTAATTTTCATCCAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAATAGTTAAAGCAATTAGTTACATAAATTAATTTTCATCCAAT  773

seq1  TGTATGTTGTAAGACATAGGAAGACAGTAACATATGAGTGAAATGAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTGTAAGACATAGGAAGACAGTAACATATGAGTGAAATGAAATA  823

seq1  GTAGATAAAAAATTGCTAGTGAAAATTGAAATTTTAGTCAAAATATGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAAAAAATTGCTAGTGAAAATTGAAATTTTAGTCAAAATATGATT  873

seq1  TATCCATGCAAATTAATTTTAAAAGAAGTAAATTTTTAATAACTTATATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATGCAAATTAATTTTAAAAGAAGTAAATTTTTAATAACTTATATG  923

seq1  TAGGTAAGTATGTTTTTTTGAACTGTGCAATGATGTTTCATGAGATAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGTATGTTTTTTTGAACTGTGCAATGATGTTTCATGAGATAAAA  973

seq1  TATAATGAAAAGAAATATGGTCCAGTTCTACCAATACTGAGCTGAATTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAAAAGAAATATGGTCCAGTTCTACCAATACTGAGCTGAATTAT  1023

seq1  AAAAGAAGTACAACAGATACATGCATCATACATATCTTATGGGTCTTTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGTACAACAGATACATGCATCATACATATCTTATGGGTCTTTTT  1073

seq1  GTCCAGATAACTGATCTTAGAATTC  1124
      |||||||||||||||||||||||||
seq2  GTCCAGATAACTGATCTTAGAATTC  1098


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