BAC Information

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BAC

Clone NameB6Ng01-162C11
Chromosome1 (Build37)
Map Location 126,510,000 - 126,639,427
singlet/doubletdoublet
Overlap geneLOC666998
Upstream geneDpp10
Downstream geneActr3, Slc35f5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162C11.bB6Ng01-162C11.g
ACCDH955064DH955065
length2711,188
definitionDH955064|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C11, 5' end.DH955065|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,639,153 - 126,639,427)(126,510,000 - 126,511,201)
sequence
tatagctattgtctcctttcttttcttgtcctttttttcatggttaaagt
ctttacacagaaaatgtattcactgggtttcttggggacaagaataaaag
tacatgttttctgtcagcttttaaaaatctgtttgtgctctcacacctgt
gcacatccgtatgtacatgatacacactcatatatatgcagagagggaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gaaagagagagagagagagag
gaattctgtgcaccatacacatgtccgatttctgcacagatcagaaagat
ggagtcagatctcccaaaacagagctataggtgattgcgagccacaatgc
aggtagtgcttactcttaaccccagattaagcacttcagagctttcacaa
ttacttttttcaattcagacatttctttttccctgacagtttacagcatc
ttcagtacaacttcccatatgtctgtctgggaacacattacctgacatgc
taaataagaaggttcttgtttgctatatgatgtatcagtagagatgtcat
cgatggccttctccaaaagatataagcacctataatagctgataaattga
tccagtggatattgacaaaatgcctactaattacaatatacctgttgaaa
tattatcctaaattataaaagacttcagggtttcctgccttacagttaat
gtcctttaatttttgttttgttgttcattttctgagacaaagacagctga
agattcacaccaaaagtgtatcttaaacttacaagtgttttctaagaagg
aacttttaaaagtccaaataaaaccccacttttctgtagttggggtaatt
tagtgaaattaaccatgtaaatgctcaaagaaacatatgattagcacagg
aatgaataaaattacagattaaaagggatcaaattatattttggggtgca
gctcatgaatcataattaaattgcagtggctgataagctcagaccctctc
tcatcacacagcatgtgtgaacagccctgctaatgagtcttcgtcttcct
ttagatgacaaagtagatgctgatctgccactgaatgctttcgggctgga
gagatgggctcagcaattaagagaactaactactcttgcagaggccccag
atccaatgcagggcagcacatgttctctgtaacttcagcaacagacgact
ttgctactcttttctgctgtctatgggcatgcctacccatgggcatgagc
acacacacacacacactcactcacatcactcctcccacaaccccacaaag
taaaaatcttgaaaacttcccaaaggtagatgaggcatgggttggtttac
ttctgccgccatccaatatcctacatcttagagattgggggaaatttcta
ttgatgtcctttgtcggggagaacagccttcatgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_126639153_126639427
seq2: B6Ng01-162C11.b_54_324 (reverse)

seq1  CTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      |||||||||||||||||||    |||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTT----TCTCTCTCTCTCTCTCTCTCTCTCTCT  46

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTGCATATATATGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTGCATATATATGAGT  96

seq1  GTGTATCATGTACATACGGATGTGCACAGGTGTGAGAGCACAAACAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCATGTACATACGGATGTGCACAGGTGTGAGAGCACAAACAGATT  146

seq1  TTTAAAAGCTGACAGAAAACATGTACTTTTATTCTTGTCCCCAAGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGCTGACAGAAAACATGTACTTTTATTCTTGTCCCCAAGAAACC  196

seq1  CAGTGAATACATTTTCTGTGTAAAGACTTTAACCATGAAAAAAAGGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATACATTTTCTGTGTAAAGACTTTAACCATGAAAAAAAGGACAA  246

seq1  GAAAAGAAAGGAGACAATAGCTATA  275
      |||||||||||||||||||||||||
seq2  GAAAAGAAAGGAGACAATAGCTATA  271

seq1: chr1_126510000_126511201
seq2: B6Ng01-162C11.g_69_1256

seq1  GAATTCTGTGCACCATACACATGTCCGATTTCTGCACAGATCAGAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCACCATACACATGTCCGATTTCTGCACAGATCAGAAAGAT  50

seq1  GGAGTCAGATCTCCCAAAACAGAGCTATAGGTGATTGCGAGCCACAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGATCTCCCAAAACAGAGCTATAGGTGATTGCGAGCCACAATGC  100

seq1  AGGTAGTGCTTACTCTTAACCCCAGATTAAGCACTTCAGAGCTTTCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTGCTTACTCTTAACCCCAGATTAAGCACTTCAGAGCTTTCACAA  150

seq1  TTACTTTTTTCAATTCAGACATTTCTTTTTCCCTGACAGTTTACAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTTCAATTCAGACATTTCTTTTTCCCTGACAGTTTACAGCATC  200

seq1  TTCAGTACAACTTCCCATATGTCTGTCTGGGAACACATTACCTGACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTACAACTTCCCATATGTCTGTCTGGGAACACATTACCTGACATGC  250

seq1  TAAATAAGAAGGTTCTTGTTTGCTATATGATGTATCAGTAGAGATGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGAAGGTTCTTGTTTGCTATATGATGTATCAGTAGAGATGTCAT  300

seq1  CGATGGCCTTCTCCAAAAGATATAAGCACCTATAATAGCTGATAAATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGCCTTCTCCAAAAGATATAAGCACCTATAATAGCTGATAAATTGA  350

seq1  TCCAGTGGATATTGACAAAATGCCTACTAATTACAATATACCTGTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGATATTGACAAAATGCCTACTAATTACAATATACCTGTTGAAA  400

seq1  TATTATCCTAAATTATAAAAGACTTCAGGGTTTCCTGCCTTACAGTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCTAAATTATAAAAGACTTCAGGGTTTCCTGCCTTACAGTTAAT  450

seq1  GTCCTTTAATTTTTGTTTTGTTGTTCATTTTCTGAGACAAAGACAGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTAATTTTTGTTTTGTTGTTCATTTTCTGAGACAAAGACAGCTGA  500

seq1  AGATTCACACCAAAAGTGTATCTTAAACTTACAAGTGTTTTCTAAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCACACCAAAAGTGTATCTTAAACTTACAAGTGTTTTCTAAGAAGG  550

seq1  AACTTTTAAAAGTCCAAATAAAACCCCACTTTTCTGTAGTTGGGGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAAAAGTCCAAATAAAACCCCACTTTTCTGTAGTTGGGGTAATT  600

seq1  TAGTGAAATTAACCATGTAAATGCTCAAAGAAACATATGATTAGCACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAATTAACCATGTAAATGCTCAAAGAAACATATGATTAGCACAGG  650

seq1  AATGAATAAAATTACAGATTAAAAGGGATCAAATTATATTTTGGGGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATAAAATTACAGATTAAAAGGGATCAAATTATATTTTGGGGTGCA  700

seq1  GCTCATGAATCATAATTAAATTGCAGTGGCTGATAAGCTCAGACCCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGAATCATAATTAAATTGCAGTGGCTGATAAGCTCAGACCCTCTC  750

seq1  TCATCACACAGCATGTGTGAACAGCCCTGCTAATGAGTCTTCGTCTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCATCACACAGCATGTGTGAACAGCCCTGCTAATGAGTCTTCGTCTTCC-  799

seq1  TTTAGATGACAAAGTAGATGCTGATCTGCCACTGAATGCTTTCGGGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATGACAAAGTAGATGCTGATCTGCCACTGAATGCTTTCGGGCTGG  849

seq1  AGAGAT-GGCTCAGCAATTAAGAGAACTAACTACTCTTGCAGAGGCCCCA  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGCTCAGCAATTAAGAGAACTAACTACTCTTGCAGAGGCCCCA  899

seq1  GATCCAATGCAGGGCAGCACATGTTCCCTGTAACTTCAGCAACAGACGAC  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GATCCAATGCAGGGCAGCACATGTTCTCTGTAACTTCAGCAACAGACGAC  949

seq1  -TTGCTACTCTTTTCTGCTGTCTATGGGCATGCCTACCCATGGGCATGAG  998
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTACTCTTTTCTGCTGTCTATGGGCATGCCTACCCATGGGCATGAG  999

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACA  1048
      ||||||||||||||||| ||| ||||  ||| | | | ||||  | ||||
seq2  CACACACACACACACACTCACTCACA-TCACTC-CTCCCACAACCCCACA  1047

seq1  AAGTTAAAAAATACTTGAAAACTTACCAAAAGTTAGATTGATGCATTGTG  1098
      ||||  |||||| ||||||||||| || |||| |||| ||| ||||   |
seq2  AAGT--AAAAAT-CTTGAAAACTT-CCCAAAGGTAGA-TGAGGCAT--GG  1090

seq1  TTTGGTTTTTACTTTCTTGCTGTCATTCAATATTCTTACATTCTTATGAT  1148
       ||||  |||||||   ||| | ||| ||||| || |||| |||||    
seq2  GTTGG--TTTACTT--CTGCCGCCATCCAATA-TCCTACA-TCTTAGAGA  1134

seq1  TTGGTGGTAATTTCTTATTGATGT-CTTTGTTCTGGAGACCAGGTTTCAT  1197
      |||| || |||||| ||||||||| ||||||   ||||| |||  |||||
seq2  TTGGGGGAAATTTC-TATTGATGTCCTTTGTCGGGGAGAACAGCCTTCAT  1183

seq1  GAAGC  1202
      |||||
seq2  GAAGC  1188