BAC Information

Click to search

BAC

Clone NameB6Ng01-162H15
Chromosome1 (Build37)
Map Location 50,774,340 - 50,914,251
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162H15.bB6Ng01-162H15.g
ACCDH955306DH955307
length1,1141,090
definitionDH955306|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H15, 5' end.DH955307|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,913,195 - 50,914,251)(50,774,340 - 50,775,434)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcatggatgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaactggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgtcccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaggaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtgggactcttctttcaac
agcactagtactttagaggatttggataggcacagatttcataagatagg
aaaagcagagtctaagaatacttcccatagaggtcacgcgaatcacttca
caggcccaatcatctcccagtttacattagggtaaggagcttcagcagat
ggccactaaacacatcaccaattacccttctttctatagcttatactttt
tttacagtaaggttactgctgcaaaagaaccagtacacagtttcacacac
taatacaagcgctcttgtgagatattcaagacaggtgcttaacttactat
atgtttcagtaacacttgatctagatttcctgtaccaggaaacctgaaga
tggagcacaagtgtccaatatttctttttctttcctttctttattttata
acatttttgttagatatttcttatatacattttaaatgttatccctttct
ggtttccctctgaaaaccccctatcctcttcctctctctgctcacaccca
gcgacttccacttc
gaattctcagatggattacacacacatagtgattcaagtctaggtacaat
tgtcttctcagcaagcagagcaaatcacctgacttcaccacaccaaacac
gaacaaaataacacaagaagagcatcagctcagcaatgctaggggctcct
gctgtgcaaaagaaccacaggccagctgctccaaggcaatgacagataca
cagtaaaagctgcctgcttcctccaaacagataagcaaaggatagatttt
taaaatttgatttaatttttttaaggatggaagggaatatagattttgcc
cacgccacatggggatttctgccttctgtacagaactgatacaaagagct
caagatgagagggatatagccaggtagtatagtatatacaacaatgttaa
gcatcacagtagggagaagttagggaaattcaatgaaaatgttttaaaga
agatttgaaaaagtcttgccaggacaatttctcaggaactttgaacatga
tctacaaatggaatttttgggatttctttgctttgtaggacaaaaatagg
gcctagaaattgggttatgcagtaaataaacaaaggtaataaaatattga
ggtattcaatctttaaaaaaatagatcaaaggcagggcctaggtcaccta
ccttatgtgagatagtagaaatttaaaccttaagaattatattagccagg
cagtggtcatgcatgcctttaatctcagcacttgggaggcagaggcaggc
agatttctgagtttgaggccagcctggtctacagagtgagttccaggaca
gataggactatacagaaaaaccttgtctcaaaaaaaaaatatatatataa
ggagagagcctggaagcaggcttatacaataaataatgtaaaactgacct
catgaaagttgtgtcagtaaacagcaaaagcactatctaatcagttaata
tttgtttagattgctttatgtgcctgatttttttatttatcaaaatgtga
atggttttgagttttgtgttaatattaaattctcgaccaagacttgttaa
tttgaagaaagggctctatattgcaatgatagaaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50913195_50914251
seq2: B6Ng01-162H15.b_115_1158 (reverse)

seq1  GAAGTGGAAGTCGCTGGGTTGGTGAGCAGGAGGAGAG-GGAAGAGGATAG  49
      |||||||||||||||||||  |||||||    ||||| ||||||||||||
seq2  GAAGTGGAAGTCGCTGGGT--GTGAGCA----GAGAGAGGAAGAGGATAG  44

seq1  GGGGTTTTCAGAGGGGAAACCAGGAAAGGGGATAACATTTAAAATGTATA  99
      |||||||||||| ||||||||||  || ||||||||||||||||||||||
seq2  GGGGTTTTCAGA-GGGAAACCAG--AAAGGGATAACATTTAAAATGTATA  91

seq1  TAAAGAAAATATCTAACAAAAATGTTAATAAAAATAAAGAAAGGAAAAGA  149
      |||   |||||||||||||||||||||   |||||||||||||| |||||
seq2  TAA--GAAATATCTAACAAAAATGTTA--TAAAATAAAGAAAGG-AAAGA  136

seq1  AAAAGAAATATTGGACACTTGTGCTCCATCTTCAGGTTTCCTGGTACAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATATTGGACACTTGTGCTCCATCTTCAGGTTTCCTGGTACAGG  186

seq1  AAATCTAGATCAAGTGTTACTGACACATATAGTAAGTTAAGCACCTGTCT  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATCTAGATCAAGTGTTACTGAAACATATAGTAAGTTAAGCACCTGTCT  236

seq1  TGAATATCTCACAAGAGCGCTTGTATTAGTGTGTGAAACTGTGTACTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATCTCACAAGAGCGCTTGTATTAGTGTGTGAAACTGTGTACTGGT  286

seq1  TCTTTTGCAGCAGTAACCTTACTGTAAAAAAAGTATAAGCTATAGAAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCAGCAGTAACCTTACTGTAAAAAAAGTATAAGCTATAGAAAGA  336

seq1  AGGGTAATTGGTGATGTGTTTAGTGGCCATCTGCTGAAGCTCCTTACCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAATTGGTGATGTGTTTAGTGGCCATCTGCTGAAGCTCCTTACCCT  386

seq1  AATGTAAACTGGGAGATGATTGGGCCTGTGAAGTGATTCGCGTGACCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAACTGGGAGATGATTGGGCCTGTGAAGTGATTCGCGTGACCTCT  436

seq1  ATGGGAAGTATTCTTAGACTCTGCTTTTCCTATCTTATGAAATCTGTGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGTATTCTTAGACTCTGCTTTTCCTATCTTATGAAATCTGTGCC  486

seq1  TATCCAAATCCTCTAAAGTACTAGTGCTGTTGAAAGAAGAGTCCCACTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAATCCTCTAAAGTACTAGTGCTGTTGAAAGAAGAGTCCCACTTA  536

seq1  TCAGTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTC  586

seq1  AGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTC  636

seq1  ATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTT  686

seq1  TCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCCTTCCAGCTTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCCTTCCAGCTTCTG  736

seq1  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTT  786

seq1  ACCAGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGAT  836

seq1  CCTCCGGTAGTACTATGTCCAGTTTTCTGAGGAACCGCCAGACTGATTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGGTAGTACTATGTCCAGTTTTCTGAGGAACCGCCAGACTGATTTC  886

seq1  CAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCC  936

seq1  TCTTTCTCCACATCCATGCCAGCATCTGCTGTCACCTGAATTTTTGATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCACATCCATGCCAGCATCTGCTGTCACCTGAATTTTTGATCT  986

seq1  TAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGC  1036

seq1  ATTTCCCT  1057
      ||||||||
seq2  ATTTCCCT  1044

seq1: chr1_50774340_50775434
seq2: B6Ng01-162H15.g_67_1156

seq1  GAATTCTCAGATGGATTACACACACATAGTGATTCAAGTCTAGGTACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGATGGATTACACACACATAGTGATTCAAGTCTAGGTACAAT  50

seq1  TGTCTTCTCAGCAAGCAGAGCAAATCACCTGACTTCACCACACCAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTCAGCAAGCAGAGCAAATCACCTGACTTCACCACACCAAACAC  100

seq1  GAACAAAATAACACAAGAAGAGCATCAGCTCAGCAATGCTAGGGGCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATAACACAAGAAGAGCATCAGCTCAGCAATGCTAGGGGCTCCT  150

seq1  GCTGTGCAAAAGAACCACAGGCCAGCTGCTCCAAGGCAATGACAGATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCAAAAGAACCACAGGCCAGCTGCTCCAAGGCAATGACAGATACA  200

seq1  CAGTAAAAGCTGCCTGCTTCCTCCAAACAGATAAGCAAAGGATAGATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAGCTGCCTGCTTCCTCCAAACAGATAAGCAAAGGATAGATTTT  250

seq1  TAAAATTTGATTTAATTTTTTTAAGGATGGAAGGGAATATAGATTTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTGATTTAATTTTTTTAAGGATGGAAGGGAATATAGATTTTGCC  300

seq1  CACGCCACATGGGGATTTCTGCCTTCTGTACAGAACTGATACAAAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCACATGGGGATTTCTGCCTTCTGTACAGAACTGATACAAAGAGCT  350

seq1  CAAGATGAGAGGGATATAGCCAGGTAGTATAGTATATACAACAATGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGAGAGGGATATAGCCAGGTAGTATAGTATATACAACAATGTTAA  400

seq1  GCATCACAGTAGGGAGAAGTTAGGGAAATTCAATGAAAATGTTTTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACAGTAGGGAGAAGTTAGGGAAATTCAATGAAAATGTTTTAAAGA  450

seq1  AGATTTGAAAAAGTCTTGCCAGGACAATTTCTCAGGAACTTTGAACATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGAAAAAGTCTTGCCAGGACAATTTCTCAGGAACTTTGAACATGA  500

seq1  TCTACAAATGGAATTTTTGGGATTTCTTTGCTTTGTAGGACAAAAATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAATGGAATTTTTGGGATTTCTTTGCTTTGTAGGACAAAAATAGG  550

seq1  GCCTAGAAATTGGGTTATGCAGTAAATAAACAAAGGTAATAAAATATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAAATTGGGTTATGCAGTAAATAAACAAAGGTAATAAAATATTGA  600

seq1  GGTATTCAATCTTTAAAAAAATAGATCAAAGGCAGGGCCTAGGTCACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCAATCTTTAAAAAAATAGATCAAAGGCAGGGCCTAGGTCACCTA  650

seq1  CCTTATGTGAGATAGTAGAAATTTAAACCTTAAGAATTATATTAGCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTGAGATAGTAGAAATTTAAACCTTAAGAATTATATTAGCCAGG  700

seq1  CAGTGGTCATGCATGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCATGCATGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGC  750

seq1  AGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA  800

seq1  GATAGGACTATACAGAAAAACCTTGTCTCAAAAAAAAAATATATATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGACTATACAGAAAAACCTTGTCTCAAAAAAAAAATATATATATAA  850

seq1  GGAGAGAGCCTGGAAGCAGGCTTATACAATAAATAATGTAAAACTGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGCCTGGAAGCAGGCTTATACAATAAATAATGTAAAACTGACCT  900

seq1  CATGAAAGTTGGGTCAGTAAACAGCAAAAGCACTATCTAATCAGTTAATA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGTTGTGTCAGTAAACAGCAAAAGCACTATCTAATCAGTTAATA  950

seq1  TTTGTTTAGATTGCTTTATTTGCCTTGATTTTTTTATTTATCAAAATGTG  1000
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  TTTGTTTAGATTGCTTTATGTGCC-TGATTTTTTTATTTATCAAAATGTG  999

seq1  AATGGTTTTGAGTTTTGTGGTTATATTAAAATTCCTCGACCAAGACTTGT  1050
      ||||||||||||||||||| | ||||||||  | ||||||||||||||||
seq2  AATGGTTTTGAGTTTTGTGTTAATATTAAA--TTCTCGACCAAGACTTGT  1047

seq1  TAATTTTGAAGAAA-GGCTCTATATTTGCAATGATAGAAAAGAAAA  1095
      ||| |||||||||| ||||||||| |||||||||||| ||||||||
seq2  TAA-TTTGAAGAAAGGGCTCTATA-TTGCAATGATAG-AAAGAAAA  1090