BAC Information

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BAC

Clone NameB6Ng01-162J16
Chromosome1 (Build37)
Map Location 116,876,371 - 116,877,467
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162J16.bB6Ng01-162J16.g
ACCDH955401DH955402
length1,0681,052
definitionDH955401|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J16, 5' end.DH955402|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattcccatgattttagaataaaatagcatttggagagctaatta
acaaaactattatgttaaaatgaagctcttgggctgtaaggtatgaatta
cagcacaagcccttttaacaaaaacaaaaacaaaaacaaaacaaaaacaa
aaaaccccacaaaaaccaaaaaacaaacattggatgcacaaagagtgaat
agagataaacacaaaaagaaaacaccacaggtcactgaagattctgtgaa
aggtagctgactaaagtttaaggaggaaccaggaacatggtatagttgtt
aagatgttttccctacaagtatgagaactccagaattcatataaagacaa
aatctgggggtgacagcccatctttgtaatactaccaccaaacacagaga
caggaagatcacctaggatcactggcaagtatctagccaacatagtgaac
tacaagccagtcagagacccaaatcaaacaacaacaaactgtggaaaaaa
cagtaaaaccaatagaagatatgcaatatctgaggaatgacatttgatta
tgaactctggacttaatacctatgagtacacttctataaccacattcaca
gaactaacagaaaacatgaaaattatagaacaaaaagaaggaacatgccc
caggaacaaacccccagagaggacagcaaatagtaaaactcaggaatgaa
agcaataaaatagaaaccaaggaagcaatcaaaaaaattagaaatcaata
aaacaaagagttatgattttcttttgagaaaatccacatgatagacaaac
ccttagccaaactatctaaaaggcaagttacaaagtcagaaatggtatca
aaggtatcataactacagacaccatggaaatctaaagaatcatcgtgtcc
tacatcaaaaacctcaactccaatctaggattttttcttctttcttcttc
ttctttcttctttcttcttcttcttcttctcttctttttttttcgagaca
gggtttctctgtatagccctgctgtctgaattcactttgtagacagctgg
cctcgactcagaatccac
gaattctctatttaagctgggcagtggaggtgcacgcctttaatcccaac
cctagagaggcagaggacagaagatttctgagtttgaggcctccctggta
tacagagtgagttccaggagagccagagctatacagagaaaccctgtctc
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaa
aaagaaaaaaaaaaaaaaagaaaatctgtttagctctgtaccacaattta
aattgggtcttttggtttgttggtgtctaacttattgagttcattatata
cattttgggcattagctctcttttggaagtagggttggtgaagatttttc
tcaaactgtaggcagtcattttgttctgatgacagtgtctattctcttgc
agaagtatttcagtttcatgaagtcctattaggaattattatttttttgg
ttttatttaaaatgcatttataaagatatttgtgttttctttcttcaatt
tttttatcggggatggatcatcaatatagaatacatcatggttaatcata
tttaagttcaagatatccaaagaatgttttttgacaaacattgtcatgta
ttctaacttaataaggtgcccatgtctccttgttttttaaaagactcttt
acttatatgtctaaagatttattttcttatccatttattgaaatatgtat
ttaggtatttattaatatatttaaatgcctacaagtacacccatcattgc
tctcttcaaacataccagaaagagggcatcagaccccattataaatgggt
tgtgagccaaaatgtgggttgcaaggaaattgaacctcaagaatcctgga
aagagattttagtgctttgtaacaactgagccatttctcagcccccatgt
ctccttgttaatactgggacactgtttgactgatcttctgaaggctgtct
tatattattattataatcatatgaatttctcaactacattaccatggcta
ccgaaagtccccataccttcccccactcccctactccacctgtaccatat
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116876371_116877467
seq2: B6Ng01-162J16.b_37_1104

seq1  GAATTCATTCACCATGATTTTAGAATAAAATAGCATTTGGAGAGCTAATT  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTC-CCATGATTTTAGAATAAAATAGCATTTGGAGAGCTAATT  49

seq1  AACAAAACTATTATGTTAAAATGAAGCTCTTGGGCTGTAAGGTATGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTATTATGTTAAAATGAAGCTCTTGGGCTGTAAGGTATGAATT  99

seq1  ACAGCACAAGCCCTTTTAACAAAAACAAAAACAAAAACAAAACAAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAAGCCCTTTTAACAAAAACAAAAACAAAAACAAAACAAAAACA  149

seq1  AAAAACCCCACAAAAACCAAAAAACAAACATTGGATGCACAAAGAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCCACAAAAACCAAAAAACAAACATTGGATGCACAAAGAGTGAA  199

seq1  TAGAGATAAACACAAAAAGAAAACACCACAGGTCACTGAAGATTCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATAAACACAAAAAGAAAACACCACAGGTCACTGAAGATTCTGTGA  249

seq1  AAGGTAGCTGACTAAAGTTTAAGGAGGAACCAGGAACATGGTATAGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCTGACTAAAGTTTAAGGAGGAACCAGGAACATGGTATAGTTGT  299

seq1  TAAGATGTTTTCCCTACAAGTATGAGAACTCCAGAATTCATATAAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTTTTCCCTACAAGTATGAGAACTCCAGAATTCATATAAAGACA  349

seq1  AAATCTGGGGGTGACAGCCCATCTTTGTAATACTACCACCAAACACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGGGGTGACAGCCCATCTTTGTAATACTACCACCAAACACAGAG  399

seq1  ACAGGAAGATCACCTAGGATCACTGGCAAGTATCTAGCCAACATAGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGATCACCTAGGATCACTGGCAAGTATCTAGCCAACATAGTGAA  449

seq1  CTACAAGCCAGTCAGAGACCCAAATCAAACAACAACAAACTGTGGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGCCAGTCAGAGACCCAAATCAAACAACAACAAACTGTGGAAAAA  499

seq1  ACAGTAAAACCAATAGAAGATATGCAATATCTGAGGAATGACATTTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAACCAATAGAAGATATGCAATATCTGAGGAATGACATTTGATT  549

seq1  ATGAACTCTGGACTTAATACCTATGAGTACACTTCTATAACCACATTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCTGGACTTAATACCTATGAGTACACTTCTATAACCACATTCAC  599

seq1  AGAACTAACAGAAAACATGAAAATTATAGAACAAAAAGAAGGAACATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAACAGAAAACATGAAAATTATAGAACAAAAAGAAGGAACATGCC  649

seq1  CCAGGAACAAACCCCCAGAGAGGACAGCAAATAGTAAAACTCAGGAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAACAAACCCCCAGAGAGGACAGCAAATAGTAAAACTCAGGAATGA  699

seq1  AAGCAATAAAATAGAAACCAAGGAAGCAATCAAAAAAATTAGAAATCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAAAATAGAAACCAAGGAAGCAATCAAAAAAATTAGAAATCAAT  749

seq1  AAAACAAAGAGTTATGATTTTCTTTTGAGAAAATCCACATGATAGACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGAGTTATGATTTTCTTTTGAGAAAATCCACATGATAGACAAA  799

seq1  CCCTTAGCCAAACTATCTAAAAGGCAAGTTAACAAAGTCAGAAATGGTAT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCTTAGCCAAACTATCTAAAAGGCAAGTT-ACAAAGTCAGAAATGGTAT  848

seq1  CAAAGGTATCATAACTACAGACACCATGGAAATCTAAAGAATCATCGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTATCATAACTACAGACACCATGGAAATCTAAAGAATCATCGTGT  898

seq1  CCTACATCAAAAACCTCAACTCCAATCTTAGGATTTTTTTCTTTCTTTCT  950
      ||||||||||||||||||||||||||| |||||||||||           
seq2  CCTACATCAAAAACCTCAACTCCAATC-TAGGATTTTTT----------C  937

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  1000
      ||||||| |||||   ||||||| ||||||| |||||   |||||   ||
seq2  TTCTTTC-TTCTT--CTTCTTTC-TTCTTTC-TTCTT--CTTCTT--CTT  978

seq1  CTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC  1050
      || || |||||||||||||||||||||||||||||||||||| ||||| |
seq2  CTCTTCTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCT-GCTGT-C  1026

seq1  TGAAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCAC  1097
      || ||||||||||||||||   |||||||||| |||||| |||||||
seq2  TG-AATTCACTTTGTAGAC--AGCTGGCCTCG-ACTCAG-AATCCAC  1068