BAC Information

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BAC

Clone NameB6Ng01-163F20
Chromosome1 (Build37)
Map Location 190,768,492 - 190,921,398
singlet/doubletdoublet
Overlap geneUsh2a, Kctd3
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163F20.bB6Ng01-163F20.g
ACCDH955973DH955974
length1,1591,113
definitionDH955973|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F20, 5' end.DH955974|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,768,492 - 190,769,659)(190,920,288 - 190,921,398)
sequence
gaattctgcaggcaaagctgcaagtaactggacacggtgcagaactggac
ctgccccaccggaaggtctccaagcgcccacattccacaccgtctcctcc
acccgagcggtggtcaacatcagtgtgccttcgagacccaatgggaacat
cagcctcttcagggtcttctccaactccagcgggacgcacgtcacggtga
gcgcacagctctgagagctgacacacacaggaaggtctgccttggtgagg
tggcttcttgccctcctccctcgaacctgtgccctgtgcatctgccctca
cttgtcctctgagaagcaggggtcctgctgtgagactgcccctttaggaa
acaggaaacatctgaactcggataagtgccagggatggtattgaagactc
ccaagaagacggagtccttacacattggtttaatttagaaattaatttac
tttatagaaatagaggccaggaagttgaagaatggcagccaggccacagg
atgaggtggatgcagtgaatgttaatatggaaaggaagagaggaagcaag
gaatgttctgggaactccgatgttgatatacacagatctctaacaaacgt
aaagtccagtctgttggtgacttctcagaggaggcagaccacagagcaca
gtgctgaccccactgctgccattaatgcatttgagggaagtcaagaggta
gaagcgagcttgggggaatctcatactgagctgcaagctgttgtgtgttg
tggagagggaaaccatgctacaaacaaactttagtgttgcaaagtggaac
acactaacgggcaaagcagctcggcaggcaagcctactgttgttgttcaa
gggtttgccgagacctaacccagccagcaagcacacggggcggggcgagg
agcaggaaactcacttggtgttttattcaaatgtgggtggcgactgttgg
cttctccccacaggtgagtcgcacctcacagtcttttgagatttgctagt
ttaaaggagatgatgggataccagaggggcaaatgctgcctaagtcactt
aattccgaagatgggggggagtgtatgaaagcttttctgagtgaaacatc
atacagtgctatttgttttacagctgtagaagataaagagactttatttc
ttgtttaaa
gaattcactatatagctgaggctgagtttaaaccactgagtctcctgcct
ttgtttccccagtgctgagatttcaggcatgtaccaacacacttagctaa
caaaattgctcttcaaagaacacttcaatttattcgaatgggttcagcac
aacctacgttgtgtctctcttatagcggtaaagagggccaggtcatcact
gagggctgtggatatggagcatcctgtttaacactcacagctcgtcaggt
tggggccatcacctgctgcactgtgcagattaaagacaggtgcttaggtc
acagaatgagaaagtgaaactaagttcacgaggcagcagcacccaagttg
acacattactgtttctacatggaggatacaggtcctagacttctaatgaa
caaatgaaatgagtcttagggggcaccaccatttaatagtgctctggaaa
cgtcccaagcagtaattatacaaacgactctaaccacagaggaatgtgag
atttgctctctgagtgtctttatgtgcactgaggagacagaccagtggct
tgaacatgacagaatccccacagagcattggaaaatgacgatatgggaga
tcggggcatgatttaaagtaggaaaatattttatgctccaaaaatctgct
cacattctgaagttctagataggacccaaggtacttgtatttggagaaat
taatgagccttcctgctttccacaagccatggaaataaagtagctagacg
ccaggacttcaggaaaaaaaagaagaagagaagaagaagaagaagaaata
aataataccctatattattaactttcctatgattttagaaaagaacatca
tgttttatttcccagtcaataaactcattcaacttggagaacattgctat
ctccaacctaatggacaggaataggggcagacaagtcctgagtgtttcct
ataaaccttttgttgtttatgttgaagatattttatactaatgaatactt
actggaaggtgcaggtaaatgaaggtggatggccctcagaacaactacca
aatgtgtatcagttagtttgcagcatggtgagccaaaggccggcatggtc
tatgctttggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190768492_190769659
seq2: B6Ng01-163F20.b_45_1203

seq1  GAATTCTGCAGGCAAAGCTGCAAGTAACTGGACACGGTGCAGAACTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGCAAAGCTGCAAGTAACTGGACACGGTGCAGAACTGGAC  50

seq1  CTGCCCCACCGGAAGGTCTCCAAGCGCCCACATTCCACACCGTCTCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCACCGGAAGGTCTCCAAGCGCCCACATTCCACACCGTCTCCTCC  100

seq1  ACCCGAGCGGTGGTCAACATCAGTGTGCCTTCGAGACCCAATGGGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAGCGGTGGTCAACATCAGTGTGCCTTCGAGACCCAATGGGAACAT  150

seq1  CAGCCTCTTCAGGGTCTTCTCCAACTCCAGCGGGACGCACGTCACGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTTCAGGGTCTTCTCCAACTCCAGCGGGACGCACGTCACGGTGA  200

seq1  GCGCACAGCTCTGAGAGCTGACACACACAGGAAGGTCTGCCTTGGTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACAGCTCTGAGAGCTGACACACACAGGAAGGTCTGCCTTGGTGAGG  250

seq1  TGGCTTCTTGCCCTCCTCCCTCGAACCTGTGCCCTGTGCATCTGCCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTGCCCTCCTCCCTCGAACCTGTGCCCTGTGCATCTGCCCTCA  300

seq1  CTTGTCCTCTGAGAAGCAGGGGTCCTGCTGTGAGACTGCCCCTTTAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTCTGAGAAGCAGGGGTCCTGCTGTGAGACTGCCCCTTTAGGAA  350

seq1  ACAGGAAACATCTGAACTCGGATAAGTGCCAGGGATGGTATTGAAGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAACATCTGAACTCGGATAAGTGCCAGGGATGGTATTGAAGACTC  400

seq1  CCAAGAAGACGGAGTCCTTACACATTGGTTTAATTTAGAAATTAATTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGACGGAGTCCTTACACATTGGTTTAATTTAGAAATTAATTTAC  450

seq1  TTTATAGAAATAGAGGCCAGGAAGTTGAAGAATGGCAGCCAGGCCACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGAAATAGAGGCCAGGAAGTTGAAGAATGGCAGCCAGGCCACAGG  500

seq1  ATGAGGTGGATGCAGTGAATGTTAATATGGAAAGGAAGAGAGGAAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGGATGCAGTGAATGTTAATATGGAAAGGAAGAGAGGAAGCAAG  550

seq1  GAATGTTCTGGGAACTCCGATGTTGATATACACAGATCTCTAACAAACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCTGGGAACTCCGATGTTGATATACACAGATCTCTAACAAACGT  600

seq1  AAAGTCCAGTCTGTTGGTGACTTCTCAGAGGAGGCAGACCACAGAGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAGTCTGTTGGTGACTTCTCAGAGGAGGCAGACCACAGAGCACA  650

seq1  GTGCTGACCCCACTGCTGCCATTAATGCATTTGAGGGAAGTCAAGAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACCCCACTGCTGCCATTAATGCATTTGAGGGAAGTCAAGAGGTA  700

seq1  GAAGCGAGCTTGGGGGAATCTCATACTGAGCTGCAAGCTGTTGTGTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGAGCTTGGGGGAATCTCATACTGAGCTGCAAGCTGTTGTGTGTTG  750

seq1  TGGAGAGGGAAACCATGCTACAAACAAACATTAGTGTTGCAAAGTGGAAC  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGAGAGGGAAACCATGCTACAAACAAACTTTAGTGTTGCAAAGTGGAAC  800

seq1  ACACTAACGGGCAAAGCAGCTCGGCAGGCAAGCCTACTGTTGTTGTTCAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACACTAACGGGCAAAGCAGCTCGGCAGGCAAGCCTACTGTTGTTGTTC-A  849

seq1  AGGGGTTGCCGAGACCTAAACCCAGCCAGCAAGCACACGGGGCGGGGCGA  900
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGGTTTGCCGAGACCT-AACCCAGCCAGCAAGCACACGGGGCGGGGCGA  898

seq1  GGAGCAGGAAACTCACTTGGTG-TTTATTCAAATGTGGGTGGCGACTGTT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAGCAGGAAACTCACTTGGTGTTTTATTCAAATGTGGGTGGCGACTGTT  948

seq1  GGCTTCTCCCCACAGGGTGAGTCGCACCTCACAGTCTTTTGAGATTGGCT  999
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  GGCTTCTCCCCACA-GGTGAGTCGCACCTCACAGTCTTTTGAGATTTGCT  997

seq1  AGTTTTAAAGGAGATGAAGGGAAACCAGAGGGGCAAATGCTGCCTAAGTC  1049
      || |||||||||||||| |||| |||||||||||||||||||||||||||
seq2  AG-TTTAAAGGAGATGATGGGATACCAGAGGGGCAAATGCTGCCTAAGTC  1046

seq1  ACTTAAATTCAGAGAATGGGGGGAGTGTATGAAAGCTTTTCTGAGTGGAG  1099
      |||||| | |  |||  ||||||||||||||||||||||||||||| || 
seq2  ACTTAATTCCGAAGATGGGGGGGAGTGTATGAAAGCTTTTCTGAGT-GAA  1095

seq1  ACATCAATACAGTTGCATATTGTTTTACAAGCTGAGGAAGATAAAGAGAC  1149
      ||||| |||||| |||   ||||||||| |||||  ||||||||||||||
seq2  ACATC-ATACAG-TGCTATTTGTTTTAC-AGCTGTAGAAGATAAAGAGAC  1142

seq1  TTTAATTTCTTGTTATAAA  1168
      ||| |||||||||| ||||
seq2  TTT-ATTTCTTGTT-TAAA  1159

seq1: chr1_190920288_190921398
seq2: B6Ng01-163F20.g_68_1180 (reverse)

seq1  TAACC-AAGCATGAGCCATGCCGGCCTTT-GCTCACCATGCTGCAAACTA  48
      ||||| ||||||   |||||||||||||| ||||||||||||||||||||
seq2  TAACCAAAGCATAGACCATGCCGGCCTTTGGCTCACCATGCTGCAAACTA  50

seq1  ACTGATAC-CATTTGGTAGTGGTTCTGAGGACATTCCA-CTTCATTTCCT  96
      |||||||| ||||||||||| ||||||||| |  |||| |||||||| | 
seq2  ACTGATACACATTTGGTAGTTGTTCTGAGGGCCATCCACCTTCATTTACC  100

seq1  TGCA-CTTCCAGTAAGTATTCATTAGTAATAAAATTATTTTCAACATAAA  145
      |||| |||||||||||||||||||||| |||||| ||| |||||||||||
seq2  TGCACCTTCCAGTAAGTATTCATTAGT-ATAAAA-TATCTTCAACATAAA  148

seq1  CAACAAATGTTTTATAGGAAACACTCAGGACTTGTCTGCCCCTATTTCCT  195
      ||||||| | |||||||||||||||||||||||||||||||||| |||||
seq2  CAACAAAAGGTTTATAGGAAACACTCAGGACTTGTCTGCCCCTA-TTCCT  197

seq1  GTCCATTAGGTTGGAGATAGCAATGTTCTTCAAGTTGAATGAGTTTATTG  245
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCCATTAGGTTGGAGATAGCAATGTTCTCCAAGTTGAATGAGTTTATTG  247

seq1  ACT-GGAAATAAAACATGATGTTCTTTTCTAAAATCATAGGAAAGTTAAT  294
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAATAAAACATGATGTTCTTTTCTAAAATCATAGGAAAGTTAAT  297

seq1  AATATAGGGTATTATTTATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTT  344
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATATAGGGTATTATTTATTTCTTCTTCTTCTTCTTC-TCTTCTTCTTTT  346

seq1  TTTTCCTGAAGTCCTGGCGTCTAGCTACTTTATTTCCATGGCTTGTGGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGAAGTCCTGGCGTCTAGCTACTTTATTTCCATGGCTTGTGGAA  396

seq1  AGCAGGAAGGCTCATTAATTTCTCCAAATACAAGTACCTTGGGTCCTATC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGGCTCATTAATTTCTCCAAATACAAGTACCTTGGGTCCTATC  446

seq1  TAGAACTTCAGAATGTGAGCAGATTTTTGGAGCATAAAATATTTTCCTAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTCAGAATGTGAGCAGATTTTTGGAGCATAAAATATTTTCCTAC  496

seq1  TTTAAATCATGCCCCGATCTCCCATATCGTCATTTTCCAATGCTCTGTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCATGCCCCGATCTCCCATATCGTCATTTTCCAATGCTCTGTGG  546

seq1  GGATTCTGTCATGTTCAAGCCACTGGTCTGTCTCCTCAGTGCACATAAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGTCATGTTCAAGCCACTGGTCTGTCTCCTCAGTGCACATAAAG  596

seq1  ACACTCAGAGAGCAAATCTCACATTCCTCTGTGGTTAGAGTCGTTTGTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGAGAGCAAATCTCACATTCCTCTGTGGTTAGAGTCGTTTGTAT  646

seq1  AATTACTGCTTGGGACGTTTCCAGAGCACTATTAAATGGTGGTGCCCCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGCTTGGGACGTTTCCAGAGCACTATTAAATGGTGGTGCCCCCT  696

seq1  AAGACTCATTTCATTTGTTCATTAGAAGTCTAGGACCTGTATCCTCCATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCATTTCATTTGTTCATTAGAAGTCTAGGACCTGTATCCTCCATG  746

seq1  TAGAAACAGTAATGTGTCAACTTGGGTGCTGCTGCCTCGTGAACTTAGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACAGTAATGTGTCAACTTGGGTGCTGCTGCCTCGTGAACTTAGTT  796

seq1  TCACTTTCTCATTCTGTGACCTAAGCACCTGTCTTTAATCTGCACAGTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCTCATTCTGTGACCTAAGCACCTGTCTTTAATCTGCACAGTGC  846

seq1  AGCAGGTGATGGCCCCAACCTGACGAGCTGTGAGTGTTAAACAGGATGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTGATGGCCCCAACCTGACGAGCTGTGAGTGTTAAACAGGATGCT  896

seq1  CCATATCCACAGCCCTCAGTGATGACCTGGCCCTCTTTACCGCTATAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCACAGCCCTCAGTGATGACCTGGCCCTCTTTACCGCTATAAGA  946

seq1  GAGACACAACGTAGGTTGTGCTGAACCCATTCGAATAAATTGAAGTGTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACAACGTAGGTTGTGCTGAACCCATTCGAATAAATTGAAGTGTTC  996

seq1  TTTGAAGAGCAATTTTGTTAGCTAAGTGTGTTGGTACATGCCTGAAATCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAGCAATTTTGTTAGCTAAGTGTGTTGGTACATGCCTGAAATCT  1046

seq1  CAGCACTGGGGAAACAAAGGCAGGAGACTCAGTGGTTTAAACTCAGCCTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGGGAAACAAAGGCAGGAGACTCAGTGGTTTAAACTCAGCCTC  1096

seq1  AGCTATATAGTGAATTC  1111
      |||||||||||||||||
seq2  AGCTATATAGTGAATTC  1113