BAC Information

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BAC

Clone NameB6Ng01-163I03
Chromosome6 (Build37)1 (Build37)
Map Location 37,678,443 - 37,678,986189,709,038 - 189,709,556
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2
Downstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163I03.bB6Ng01-163I03.g
ACCDH956076DH956077
length538928
definitionDH956076|Mus musculus domesticus DNA, BAC clone: B6Ng01-163I03, 5' end.DH956077|Mus musculus domesticus DNA, BAC clone: B6Ng01-163I03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,678,443 - 37,678,986)(189,709,038 - 189,709,556)
sequence
tatggaatgacctgtcttagggacttttttaaaaattattctgttattga
gataaggctccatgaccaaggcaacttaaaagaagaaagagttttcatga
ggcttacagtttcagaagagttagaatccataaccatcaaagtagagagc
atggttgagagtaggcaggcttggcactggagtggagctgagagcttata
tcttgaggcactatggcaaagcagatcaagagacactgaaaatagtgtga
gctttggaaacattgtcacggccactgacacacctcctccaacaaggcca
cacctcctaatcctttccaaacagttccagctactgggcgtctgcattta
gtctaggctctgccccacagttacctagcatcagtcaggtgtgcctgact
cactataaaagaggctgcttgccctattctctcttgttttcttgctttgt
cctcttgctccttactctctctctctctctctctccccctattcctcccc
ccctcccccctctctccacatgctcatggctagcctct
gaattcatagtatctgatcttaagatttcttataaaagctactatgatcc
tgagagtggaaaatgtgaaatgaaacagaacaaagcaattccactacccc
ccaaaaaacaatcacaatggaacacaatccagaacctagaattgttctat
acttctgcagtcaactgaagttctacagaaatgctaagactagtgctttg
aacaaattatattagaagaaatggacatctgtatgttaaagaaaagaaaa
gaaaacaaaacaaaaccttgacacaccatacacacagtagagaaatccag
ggtaactctcacagagattgagaatcatctcacagctgctgcctttgatc
atcacagtcactcaactttcaactactcagaataacaatttgaagctaat
tattatatctacggaacatactatattctgattagaatacgtaaaagaaa
attgtatattgttaatttgaatctttatacaaatgaaaagggttaaaaac
agcaagaggctgtagcagttgctgctcttgtaggggacctgggttcattt
ctctgtacccacatcagacaccttctgtaatatatatccagggatccaaa
actctcttctggcctctgaaagcaatgcatgtgtcttagtcagggtttct
attcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggtt
tattcagcttacacttccatactgctgttcatcaccaaggaagtcaggac
tggaactcaagcaggtcagaaagcacgagctgatgcagaggccatggagg
gatgtctttactggcttgcttccactggcttgcttagcctgctctcttat
agaaccaagactaccagcccagagatggtcccacccacaaggggcctttc
cccttgatcactaattgagaaaatgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37678443_37678986
seq2: B6Ng01-163I03.b_45_588

seq1  GAATTCTATGGAATGACCTGTCTTAGGGACTTTTTTAAAAATTATTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGAATGACCTGTCTTAGGGACTTTTTTAAAAATTATTCTGT  50

seq1  TATTGAGATAAGGCTCCATGACCAAGGCAACTTAAAAGAAGAAAGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGATAAGGCTCCATGACCAAGGCAACTTAAAAGAAGAAAGAGTTT  100

seq1  TCATGAGGCTTACAGTTTCAGAAGAGTTAGAATCCATAACCATCAAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGCTTACAGTTTCAGAAGAGTTAGAATCCATAACCATCAAAGTA  150

seq1  GAGAGCATGGTTGAGAGTAGGCAGGCTTGGCACTGGAGTGGAGCTGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATGGTTGAGAGTAGGCAGGCTTGGCACTGGAGTGGAGCTGAGAG  200

seq1  CTTATATCTTGAGGCACTATGGCAAAGCAGATCAAGAGACACTGAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATCTTGAGGCACTATGGCAAAGCAGATCAAGAGACACTGAAAATA  250

seq1  GTGTGAGCTTTGGAAACATTGTCACGGCCACTGACACACCTCCTCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGCTTTGGAAACATTGTCACGGCCACTGACACACCTCCTCCAACA  300

seq1  AGGCCACACCTCCTAATCCTTTCCAAACAGTTCCAGCTACTGGGCGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACACCTCCTAATCCTTTCCAAACAGTTCCAGCTACTGGGCGTCTG  350

seq1  CATTTAGTCTAGGCTCTGCCCCACAGTTACCTAGCATCAGTCAGGTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTCTAGGCTCTGCCCCACAGTTACCTAGCATCAGTCAGGTGTGC  400

seq1  CTGACTCACTATAAAAGAGGCTGCTTGCCCTATTCTCTCTTGTTTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCACTATAAAAGAGGCTGCTTGCCCTATTCTCTCTTGTTTTCTTG  450

seq1  CTTTGTCCTCTTGCTCCTTACTCTCTCTCTCTCTCTCTCTCCCCCTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCTCTTGCTCCTTACTCTCTCTCTCTCTCTCTCTCCCCCTATTC  500

seq1  CTCCCCCCCTCCCCCCTCTCTCCACATGCTCATGGCTAGCCTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCCTCCCCCCTCTCTCCACATGCTCATGGCTAGCCTCT  544

seq1: chr1_189709038_189709556
seq2: B6Ng01-163I03.g_315_831

seq1  AAAGAAAACAAAACAAAACCTTTTTTTTTTCTGAGATGCTGTAACTACCG  50
      |||||||||||||||||||||          ||| |  |  ||   ||  
seq2  AAAGAAAACAAAACAAAACCT----------TGACACACCATA--CACAC  38

seq1  AGCAAAGGCTGCACATTTTGGATCAATGACCCTCCCA-AGCAAAAGAG-G  98
      || | ||     | ||   || | |      ||| || ||  |  |||  
seq2  AGTAGAG-----AAATCCAGGGTAA------CTCTCACAGAGATTGAGAA  77

seq1  TC--CCCACAGGGGCTG---AAGA-GACCTCAGTAGCTCAGAGTGTTTGC  142
      ||  | |||||  ||||     ||  | | ||||  |||| | | |   |
seq2  TCATCTCACAGCTGCTGCCTTTGATCATCACAGTCACTCA-ACTTTCAAC  126

seq1  TACTCTTGAGGAGGACACAAGTTTGATTCCCGGCTCCACCTCTAACAGTG  192
      |||||      || | |  | |||||      |||  |  | | | |   
seq2  TACTC------AGAATAACAATTTGA-----AGCT--AATTATTATATCT  163

seq1  CTGGGGGATCCTGTGCTCTCTCCTGGGCTCTGCAGGTGCTACATGTACAT  242
        ||   || || |  |||       | |  | |   | || | | | ||
seq2  ACGGAACATACTATATTCT-------GATTAGAATACG-TAAAAGAAAAT  205

seq1  GGTGCATAGACAGCCAGGAAC---ACACACGTGCACTGGATTAGAAAC-G  288
       ||  || |  |    | | |   | |||  || |  || ||| |||| |
seq2  TGTATATTGTTAATTTGAATCTTTATACAAATGAAAAGGGTTAAAAACAG  255

seq1  TA-----CTGTAAAA-----------TGAAAAGGA-----GTTC------  311
       |     |||||  |           || |  |||     ||||      
seq2  CAAGAGGCTGTAGCAGTTGCTGCTCTTGTAGGGGACCTGGGTTCATTTCT  305

seq1  -----------TCATAAACC--AAGCAAT-GATAGCCAGGCATTAAAAAA  347
                 ||| | |||    | |||  ||| ||||| ||  |||| 
seq2  CTGTACCCACATCAGACACCTTCTGTAATATATATCCAGGGATCCAAAAC  355

seq1  TCCCTTTAACTGAGGCCTCAAGTTAACTATTATATGGCTGTCTTAGTCAG  397
      || |||   ||  ||||||     ||  | |  |||  ||||||||||||
seq2  TCTCTT---CT--GGCCTC--TGAAAGCAATGCATG--TGTCTTAGTCAG  396

seq1  GGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGA  446

seq1  AAGGGTTTATTTGGCTTACACTTCCACACTGCTGTTCATCACCAAAGGAA  497
      |||||||||||  ||||||||||||| |||||||||||||||| ||||||
seq2  AAGGGTTTATTCAGCTTACACTTCCATACTGCTGTTCATCACC-AAGGAA  495

seq1  GTCAGGACTGGAACTCAAGCAG  519
      ||||||||||||||||||||||
seq2  GTCAGGACTGGAACTCAAGCAG  517