BAC Information

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BAC

Clone NameB6Ng01-163O10
Chromosome1 (Build37)
Map Location 140,627,243 - 140,808,934
singlet/doubletdoublet
Overlap geneLhx9, 2310009B15Rik, 1700019P21Rik
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745
Downstream geneLOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163O10.bB6Ng01-163O10.g
ACCDH956370DH956371
length1,1191,241
definitionDH956370|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O10, 5' end.DH956371|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,807,812 - 140,808,934)(140,627,243 - 140,628,499)
sequence
gaattcattttgaacatttttctggtgtgtcagcttaggtaatcacacag
acatgctctaccaatgatgtcatcttatttgtgtctctctaagtcccacc
tactctcaccatcctctgtacaatgaaaacgatagaaagctgtaggtgct
gagagaatatacacacataaacaaactgcctggctcatgctaagtgctaa
acgtgttggtatacttcttccctctgtgccctacaatttaatttgtttta
tgtggctcagtcctgacctcccaataaaatgcccccaaagaaataattat
atatacctttactttgaagcttacaaaactatgttctgggagaagcctgt
gggactcaggagaagtcgtagggagataatcaactggaatttgaattaac
ttgtttcctgaaatagattaatgaatgtttgtggagactgagttgggtgc
tcatgttgggaagagaggctcttggtacttcttgctgatatccttgtggg
caaacctaaacagtctgcctgactcagtgctggctctgccacttgaagaa
tgcttctgggactccccttcctcttctgtgaaatagtggcagtggtgttc
ctattcattaattggttctatcaaatgagtatgcaagcatatgcacacat
atgcagtttcattcacatgaatggcatataaatgcttgctgctgtaatga
ttttaccattgttgttgtgctgtccttaactgtggacaagatgcagctgg
aagcatgataacttggtggaagggtgcagtctgtattcagacagatctgg
caggtctatctatatctaactttggatatatctatatctagatatagacc
tgtctatagctaacatatatcccatatatattaactcacttgatacctgt
tctttagtatacaaaacaaggccaatacctgtatattattactttcttat
ctctttagatgtgatgatagttccaaaactatgggttggtggcaggtgta
tttacatttcagtacttgagagcctgtgtgtggccctttaaggacattga
attcagggcaagcctatgctatcgagggagatctggctccccaccttgca
aaaaataactattataaag
gaattcaaggtctgtctggaaagcacagcgagataccatctcaaaagtct
aaaataagagctggggctttagctcagagggtagaatgattgcctagcat
gcacaaggcctgagtttgacacccagcaccacttaaaactggacttggtg
gcacatgcctgtagtagagacaggaggtttctaagttcaaagtcatcccc
aaccacatagcaagttcaaggttagcctggactacaggagatcctgtctc
aaaaaataaaataaaataattaaaacatcagtagtaattataatggtgca
ttctctgcttttcagctcattttgctttgctaatagggactgtttgtgaa
atctttgcaatcgtaaattcatagcactcactcagataactctgaggaca
gaaaatcaactctgctcaaacactagccaacatagaatgctctgccgcga
ttttgccgcccactgacaggcagagagttgcacggtttgtttacattgaa
tgctcagttagcttgaaaaatggcagtttgagcttcttggtgcttagtaa
cccgtatgttttatgagacgaggtcagaagaagaggggaagttcaaaaca
ttactctctggacgcagcatagtaccaggagcaaaagtgagcctcatctt
gttatttcactggcaataaatttaagtgctgggcgtttcccgggagcagc
cattgggaagcacgccccccatctgaagtcatccgttgactacggctttt
cccttaccatcacagatattaattataaaggcaaacattcatttgaacag
ttatgtcttcttttacgatttttttcttagtcaaactccatcaattttga
caggcaaacttttataaaaacatatcatcctcacatgtctgccaaattag
cttgtgctatgtatcaacttaaaatatactttaactgttataccaacact
caaaaacagatgggactgatgcagatggtgccgcgagaaacttctgggga
aataaactgatttggtgcctattgagaagctatttgggataaattctttc
tcttcagttctgccccaaaggagaaaaatctttttttttctggttttaga
aagggtggaatcttgagcctaaccatctccggttagtagtactgcttaac
ctaaaataaacaatattattagttacgcatcctactgaagctatgttctg
ctgaagaagaggctcggcttaagcttggcctctccctctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_140807812_140808934
seq2: B6Ng01-163O10.b_42_1160 (reverse)

seq1  CTTTATAATTAGTATATTTTTTGCAAGGTTGGGAGCCAGTATCTCCCTCG  50
      |||||||| |||| ||||||||||||||| ||||||||| ||||||||||
seq2  CTTTATAA-TAGT-TATTTTTTGCAAGGTGGGGAGCCAG-ATCTCCCTCG  47

seq1  ATAGCATAGGCTTGCCCTGAATTCATGGTCCTTTTAAGAGCCACACACAG  100
      |||||||||||||||||||||||||  |||| || ||| |||||||||||
seq2  ATAGCATAGGCTTGCCCTGAATTCAATGTCC-TTAAAGGGCCACACACAG  96

seq1  GCTCTCAAGTACTGGAATTGTAAATACCACCTGCCACCAACCC-TAGTTT  149
      ||||||||||||| ||| |||||||| |||||||||||||||| ||||||
seq2  GCTCTCAAGTACT-GAAATGTAAATA-CACCTGCCACCAACCCATAGTTT  144

seq1  TGGAACTATCATCACATCTAAAGAGATAAGAAAGTAATAATATACAGGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTATCATCACATCTAAAGAGATAAGAAAGTAATAATATACAGGTA  194

seq1  TTGGCCTTGTTTTGTATACTAAAGAACAGGTATCAAGTGAGTTAATATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTGTTTTGTATACTAAAGAACAGGTATCAAGTGAGTTAATATAT  244

seq1  ATGGGATATATGTTAGCTATAGACAGGTCTATATCTAGATATAGATATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATATATGTTAGCTATAGACAGGTCTATATCTAGATATAGATATAT  294

seq1  CC-AAGTTAGATATAGATAGACCTGCCAGATCTGTCTGAATACAGACTGC  348
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTAGATATAGATAGACCTGCCAGATCTGTCTGAATACAGACTGC  344

seq1  ACCCTTCCACCAAGTTATCATGCTTCCTGCTGCATCTTGTCCACAGTTAA  398
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCCTTCCACCAAGTTATCATGCTTCCAGCTGCATCTTGTCCACAGTTAA  394

seq1  GGACAGCACAACAACAATGGTAAAATCATTACAGCAGCAAGCATTTATAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCACAACAACAATGGTAAAATCATTACAGCAGCAAGCATTTATAT  444

seq1  GCCATTCATGTGAATGAAACTGCATATGTGTGCATATGCTTGCATACTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCATGTGAATGAAACTGCATATGTGTGCATATGCTTGCATACTCA  494

seq1  TTTGATAGAACCAATTAATGAATAGGAACACCACTGCCACTATTTCACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGAACCAATTAATGAATAGGAACACCACTGCCACTATTTCACAG  544

seq1  AAGAGGAAGGGGAGTCCCAGAAGCATTCTTCAAGTGGCAGAGCCAGCACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGGGGAGTCCCAGAAGCATTCTTCAAGTGGCAGAGCCAGCACT  594

seq1  GAGTCAGGCAGACTGTTTAGGTTTGCCCACAAGGATATCAGCAAGAAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGCAGACTGTTTAGGTTTGCCCACAAGGATATCAGCAAGAAGTA  644

seq1  CCAAGAGCCTCTCTTCCCAACATGAGCACCCAACTCAGTCTCCACAAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCCTCTCTTCCCAACATGAGCACCCAACTCAGTCTCCACAAACA  694

seq1  TTCATTAATCTATTTCAGGAAACAAGTTAATTCAAATTCCAGTTGATTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATCTATTTCAGGAAACAAGTTAATTCAAATTCCAGTTGATTAT  744

seq1  CTCCCTACGACTTCTCCTGAGTCCCACAGGCTTCTCCCAGAACATAGTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTACGACTTCTCCTGAGTCCCACAGGCTTCTCCCAGAACATAGTTT  794

seq1  TGTAAGCTTCAAAGTAAAGGTATATATAATTATTTCTTTGGGGGCATTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCTTCAAAGTAAAGGTATATATAATTATTTCTTTGGGGGCATTTT  844

seq1  ATTGGGAGGTCAGGACTGAGCCACATAAAACAAATTAAATTGTAGGGCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAGGTCAGGACTGAGCCACATAAAACAAATTAAATTGTAGGGCAC  894

seq1  AGAGGGAAGAAGTATACCAACACGTTTAGCACTTAGCATGAGCCAGGCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGAAGTATACCAACACGTTTAGCACTTAGCATGAGCCAGGCAG  944

seq1  TTTGTTTATGTGTGTATATTCTCTCAGCACCTACAGCTTTCTATCGTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATGTGTGTATATTCTCTCAGCACCTACAGCTTTCTATCGTTTT  994

seq1  CATTGTACAGAGGATGGTGAGAGTAGGTGGGACTTAGAGAGACACAAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACAGAGGATGGTGAGAGTAGGTGGGACTTAGAGAGACACAAATA  1044

seq1  AGATGACATCATTGGTAGAGCATGTCTGTGTGATTACCTAAGCTGACACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACATCATTGGTAGAGCATGTCTGTGTGATTACCTAAGCTGACACA  1094

seq1  CCAGAAAAATGTTCAAAATGAATTC  1123
      |||||||||||||||||||||||||
seq2  CCAGAAAAATGTTCAAAATGAATTC  1119

seq1: chr1_140627243_140628499
seq2: B6Ng01-163O10.g_70_1310

seq1  GAATTCAAGGCCTGTCTGGAAAGCACAGCGAGATACCATCTCAAAAGTCT  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCTGTCTGGAAAGCACAGCGAGATACCATCTCAAAAGTCT  50

seq1  AAAATAAGAGCTGGGGCTTTAGCTCAGAGGGTAGAATGATTGCCTAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGAGCTGGGGCTTTAGCTCAGAGGGTAGAATGATTGCCTAGCAT  100

seq1  GCACAAGGCCTGAGTTTGACACCCAGCACCACTTAAAACTGGACTTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGCCTGAGTTTGACACCCAGCACCACTTAAAACTGGACTTGGTG  150

seq1  GCACATGCCTGTAGTAGAGACAGGAGGTTTCTAAGTTCAAAGTCATCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCCTGTAGTAGAGACAGGAGGTTTCTAAGTTCAAAGTCATCCCC  200

seq1  AACCACATAGCAAGTTCAAGGTTAGCCTGGACTACAGGAGATCCTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATAGCAAGTTCAAGGTTAGCCTGGACTACAGGAGATCCTGTCTC  250

seq1  AAAAAATAAAATAAAATAATTAAAACATCAGTAGTAATTATAATGGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAATAAAATAATTAAAACATCAGTAGTAATTATAATGGTGCA  300

seq1  TTCTCTGCTTTTCAGCTCATTTTGCTTTGCTAATAGGGACTGTTTGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTTTTCAGCTCATTTTGCTTTGCTAATAGGGACTGTTTGTGAA  350

seq1  ATCTTTGCAATCGTAAATTCATAGCACTCACTCAGATAACTCTGAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCAATCGTAAATTCATAGCACTCACTCAGATAACTCTGAGGACA  400

seq1  GAAAATCAACTCTGCTCAAACACTAGCCAACATAGAATGCTCTGCCGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAACTCTGCTCAAACACTAGCCAACATAGAATGCTCTGCCGCGA  450

seq1  TTTTGCCGCCCACTGACAGGCAGAGAGTTGCACGGTTTGTTTACATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCGCCCACTGACAGGCAGAGAGTTGCACGGTTTGTTTACATTGAA  500

seq1  TGCTCAGTTAGCTTGAAAAATGGCAGTTTGAGCTTCTTGGTGCTTAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTTAGCTTGAAAAATGGCAGTTTGAGCTTCTTGGTGCTTAGTAA  550

seq1  CCCGTATGTTTTATGAGACGAGGTCAGAAGAAGAGGGGAAGTTCAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTATGTTTTATGAGACGAGGTCAGAAGAAGAGGGGAAGTTCAAAACA  600

seq1  TTACTCTCTGGACGCAGCATAGTACCAGGAGCAAAAGTGAGCCTCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCTGGACGCAGCATAGTACCAGGAGCAAAAGTGAGCCTCATCTT  650

seq1  GTTATTTCACTGGCAATAAATTTAAGTGCTGGGCGTTTCCCGGGAGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCACTGGCAATAAATTTAAGTGCTGGGCGTTTCCCGGGAGCAGC  700

seq1  CATTGGGAAGCACGCCCCCCATCTGAAGTCATCCGTTGACTACGGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGAAGCACGCCCCCCATCTGAAGTCATCCGTTGACTACGGCTTTT  750

seq1  CCCTTACCATCACAGATATTAATTATAAAGGCAAACATTCATTTGAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCATCACAGATATTAATTATAAAGGCAAACATTCATTTGAACAG  800

seq1  TTATGTCTTCTTTTACGATTTTTTTCTTAGTCAAACTCCATCAATTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTTCTTTTACGATTTTTTTCTTAGTCAAACTCCATCAATTTTGA  850

seq1  CAGGCAAACTTTTATAAAAACATATCATCCTCACATGTCTGCCAAATTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAACTTTTATAAAAACATATCATCCTCACATGTCTGCCAAATTAG  900

seq1  CTTGTTGCTATGTATCAACTTAAAATATTACTTTAACTGTTATACCAACA  950
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTG-TGCTATGTATCAACTTAAAATA-TACTTTAACTGTTATACCAACA  948

seq1  CTCAAAAACAGATGGGACTGATGCAAGATGGTGCCGCGAGAAAC-TCTGG  999
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  CTCAAAAACAGATGGGACTGATGC-AGATGGTGCCGCGAGAAACTTCTGG  997

seq1  GGACATAAACTGATTTTGTTGTCTTAATGAG-AGCTATTTGGGAATAATT  1048
      ||| |||||||||||| ||   | || |||| ||||||||||||  ||||
seq2  GGAAATAAACTGATTTGGT--GCCTATTGAGAAGCTATTTGGGATAAATT  1045

seq1  C-TTCTCTCAAGTTCTTGCCACAAAGGAGAACA--TTTTTTTTTTCTGTT  1095
      | ||||||  ||||| |||| |||||||||| |   |||||||||||| |
seq2  CTTTCTCTTCAGTTC-TGCCCCAAAGGAGAAAAATCTTTTTTTTTCTGGT  1094

seq1  TATAGAAAGTGTGGAAATCCTGAAGCCAAAACAATTCTCCAGTTAGTAGA  1145
      | ||||||| |||| |||| || |||| || ||  ||||| |||||||| 
seq2  TTTAGAAAGGGTGG-AATCTTG-AGCCTAACCA--TCTCCGGTTAGTAG-  1139

seq1  TACTGCATAAACTAAAATAACAATTATTATTTAAGTTTACATCATGCTAC  1195
      |||||| ||| |||||||||  | |||||||  || ||||  ||| ||| 
seq2  TACTGCTTAACCTAAAATAAACAATATTATT--AG-TTAC-GCATCCTA-  1184

seq1  CTGAAGTCTATGTTCATGCTGAGAGGAAAGATGCTCTGCTTAAGCTTTGC  1245
      |||||| |||||||| |||||| ||  |||| |||| |||||||||| ||
seq2  CTGAAG-CTATGTTC-TGCTGA-AG--AAGAGGCTCGGCTTAAGCTTGGC  1229

seq1  CTCCCACTCTGA  1257
      ||| | ||||||
seq2  CTCTCCCTCTGA  1241