BAC Information

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BAC

Clone NameB6Ng01-163O14
Chromosome1 (Build37)
Map Location 81,605,801 - 81,765,296
singlet/doubletdoublet
Overlap geneEG621020, LOC433328
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneEG665145, Irs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163O14.bB6Ng01-163O14.g
ACCDH956378DH956379
length1,2311,094
definitionDH956378|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O14, 5' end.DH956379|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,605,801 - 81,607,061)(81,764,211 - 81,765,296)
sequence
gaattcttcagacagattcagtaaaggagaaaatgtccaacctcagcttg
catataatcacataactgaaagtaacagaaaccagttaactgctcttaca
tcatgcgtatccaaattgaagaaaaggttaaaaacaatttactggacatt
ttatctaacttctactgtaaacacactcatttaaccaatttttgttttta
aaacattgagaaaagtatgcatgaggcattggttagggtcctagtcaaat
cataaatagaacagcatgttcaactgtaaaacaagaggggaaaggtgaga
caatagaagctaaaggaacgaagtcataaccttaagccagttgcaaccat
ctacaaacaagaagccatgcacaaatcacagcagtcacaaaagagcagca
tctatttgtacctatcatggtgtataatactgtcattctcttgactcctt
tacttcttccttactattacccacatacctgagtactccatcttgcagaa
tttattctcactccattcaagatcctcctgattaccgacacaatgctgtt
gttgtaggacttgttagctgtttccattcttggataacaaaggttttgtc
ttattctaacacagtctttcataggtaaaaacattcctttctgtgcatag
atggctctggtgttcttctaactcatgacagttcaggaaaggaccaagag
ccttggctatttagtaattccttaagatgtctgcatcacaggtagatgaa
acatggtgatagaaacacgtgatacaagatggactgatctctgcagtgac
ctcaggggtacaatgagtgagtgttaggtcactgagagaggggagataca
gatcagaaacatcaaacctacaggcacaaaaccaagaataaaaagtaagt
gtaaaaacaaatagagagacgagaataaaaacgcaagctaagcagaaagg
tgaggacaaccagaggacacctgagcaggaggacatgtgaactgtaataa
aacgaagagaccatgtcctctggagcatttcaggtcttggtcttatttgc
ttctccactaacagaagcctctcccacccaaggagagggcaagcatttga
tgtcctctatattgtaatgtagttaggattattttattatgaccataaaa
aaaaacttgttcatcaatatctttggctggccatcacatcttactttgtt
ccatcctggttcaaatctgcgcatcactatc
gaattctttgtttagctctctaccccattttttaatggggttatttgaat
ttctggattccagcttcttgtgctcattgtatatattggacagtagtctc
ctatcaaatttaggattggaaaacatcctttcccaatatgttggtggcct
ttttgtcttattgacagtgtcttttcccttacagacgctttgcaatttta
ctgccagagcaggtgagagagccatcttctatccagtgtccctcagagac
cagtctgtataggtgagcatgcagactgcagaggcagcccatcttctggg
acaggccctgttttgggccttcatcttcatccaggcggcaggtctgaatg
ccagatatctgtgcaccttccctgcaagaggagattttgcctgcagagag
tactctgaccactgagactcaggagagaactagacttccaggtctgctga
cagaggctaacagaatcacaggaggaacaagctctaaccagagacaacca
taacaactaactccagagattagcagatggtgaaaggcaagcgtatttgt
tgaatgatgaaatggagtagcaccttgggcagatgctggaatactaatat
attggaaaatttcaaaatgggtttcatatgcagcgcggccagctgacaac
cttttgccaagcagaatacacagccttatgcttagagagcagccagaagc
agacctaggtatgattgctagttctgcttggtattagcaccttgaccctc
tgaaataacttcacttcactaagccttaatgcctatgtttgcaaaataga
ttgttttaggaattgagtgaaataaatcaggaaaatgaattggcagatga
ttggttctgaagagttgctcagtaattcagagtaaggagagaaaggttga
aaagtcagtctttgtgatcctgcttgccctcctttgcctaaagaagaaag
atgattgcaggtgcttagatagagtaccatgacaaaagttaatccggcca
agtttacttgcaatttccaacctctaagctccaatctcctaagtaagcca
accaccttatttttgccctttgcctggtgttgtgccaaggcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81605801_81607061
seq2: B6Ng01-163O14.b_46_1276

seq1  GAATTCTTCAGACAGATTCAGTAAAGGAGAAAATGTCCAACCTCAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGACAGATTCAGTAAAGGAGAAAATGTCCAACCTCAGCTTG  50

seq1  CATATAATCACATAACTGAAAGTAACAGAAACCAGTTAACTGCTCTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATCACATAACTGAAAGTAACAGAAACCAGTTAACTGCTCTTACA  100

seq1  TCATGCGTATCCAAATTGAAGAAAAGGTTAAAAACAATTTACTGGACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCGTATCCAAATTGAAGAAAAGGTTAAAAACAATTTACTGGACATT  150

seq1  TTATCTAACTTCTACTGTAAACACACTCATTTAACCAATTTTTGTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAACTTCTACTGTAAACACACTCATTTAACCAATTTTTGTTTTTA  200

seq1  AAACATTGAGAAAAGTATGCATGAGGCATTGGTTAGGGTCCTAGTCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGAGAAAAGTATGCATGAGGCATTGGTTAGGGTCCTAGTCAAAT  250

seq1  CATAAATAGAACAGCATGTTCAACTGTAAAACAAGAGGGGAAAGGTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAGAACAGCATGTTCAACTGTAAAACAAGAGGGGAAAGGTGAGA  300

seq1  CAATAGAAGCTAAAGGAACGAAGTCATAACCTTAAGCCAGTTGCAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAAGCTAAAGGAACGAAGTCATAACCTTAAGCCAGTTGCAACCAT  350

seq1  CTACAAACAAGAAGCCATGCACAAATCACAGCAGTCACAAAAGAGCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAACAAGAAGCCATGCACAAATCACAGCAGTCACAAAAGAGCAGCA  400

seq1  TCTATTTGTACCTATCATGGTGTATAATACTGTCATTCTCTTGACTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGTACCTATCATGGTGTATAATACTGTCATTCTCTTGACTCCTT  450

seq1  TACTTCTTCCTTACTATTACCCACATACCTGAGTACTCCATCTTGCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTCCTTACTATTACCCACATACCTGAGTACTCCATCTTGCAGAA  500

seq1  TTTATTCTCACTCCATTCAAGATCCTCCTGATTACCGACACAATGCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTCACTCCATTCAAGATCCTCCTGATTACCGACACAATGCTGTT  550

seq1  GTTGTAGGACTTGTTAGCTGTTTCCATTCTTGGATAACAAAGGTTTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGGACTTGTTAGCTGTTTCCATTCTTGGATAACAAAGGTTTTGTC  600

seq1  TTATTCTAACACAGTCTTTCATAGGTAAAAACATTCCTTTCTGTGCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAACACAGTCTTTCATAGGTAAAAACATTCCTTTCTGTGCATAG  650

seq1  ATGGCTCTGGTGTTCTTCTAACTCATGACAGTTCAGGAAAGGACCAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTGGTGTTCTTCTAACTCATGACAGTTCAGGAAAGGACCAAGAG  700

seq1  CCTTGGCTATTTAGTAATTCCTTAAGATGTCTGCATCACAGGTAGATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTATTTAGTAATTCCTTAAGATGTCTGCATCACAGGTAGATGAA  750

seq1  ACATGGTGATAGAAACACGTGATACAAGATGGACTGATCTCTGCAGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGATAGAAACACGTGATACAAGATGGACTGATCTCTGCAGTGAC  800

seq1  CTCAGGGGTACAATGAGTGAGTGTTAGGTCACTGAGAGAGGGGAGATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGTACAATGAGTGAGTGTTAGGTCACTGAGAGAGGGGAGATACA  850

seq1  GATCAGAAACATCAAACCTACAGGCACAAAACCAAGAATAAAAAGTAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAAACATCAAACCTACAGGCACAAAACCAAGAATAAAAAGTAAGT  900

seq1  GTAAAAACAAATAGAAGAGAAGGAGAATAAAAAACGCAAGCTAAGCAGAA  950
      |||||||||||||| |||| | |||||| |||||||||||||||||||||
seq2  GTAAAAACAAATAG-AGAG-ACGAGAAT-AAAAACGCAAGCTAAGCAGAA  947

seq1  AGGGTGAGGACAAACCAGAGGACACCTGAGCCAGGAGGACATGTGAACTG  1000
      | ||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  A-GGTGAGGAC-AACCAGAGGACACCTGAG-CAGGAGGACATGTGAACTG  994

seq1  TAATAAAACGAAGAGGAACCAGGGTCCTCTGGAGCATTTCAGGTCTTGGT  1050
      |||||||||||||||  ||||  |||||||||||||||||||||||||| 
seq2  TAATAAAACGAAGAG--ACCA-TGTCCTCTGGAGCATTTCAGGTCTTGG-  1040

seq1  TCTTA-TTGCTTCTCCAACTAACAG-AGC--CTCCCACCCAAAAGGAAGA  1096
      ||||| |||||||||| |||||||| |||  |||||||||  |||||   
seq2  TCTTATTTGCTTCTCC-ACTAACAGAAGCCTCTCCCACCC--AAGGAGAG  1087

seq1  GGCAAGCA-TTGATGT-CTCATTATGTAAAATGTAGTAAAGATAATAATA  1144
      |||||||| ||||||| |||  ||| |  |||||||| | ||| ||  ||
seq2  GGCAAGCATTTGATGTCCTCTATAT-TGTAATGTAGTTAGGATTATTTTA  1136

seq1  ATAAAAAAACCAAAAAAAAAAAAAAAAAACTTGTCTCAATCAAATAAATC  1194
       |   |  |||       | ||||||||||||||     ||  || ||| 
seq2  TT---ATGACC-------ATAAAAAAAAACTTGT-----TC--ATCAATA  1169

seq1  TCTTCTGTCCTGGCCACTCACCATTCTTACTTTGTCCCCAATCTGTGTCA  1244
      ||||  |  ||||||| ||||   |||||||||||  |||  |||  |||
seq2  TCTTTGG--CTGGCCA-TCAC--ATCTTACTTTGT-TCCATCCTGGTTCA  1213

seq1  AATC-CCGCATCACTAAC  1261
      ||||  |||||||||| |
seq2  AATCTGCGCATCACTATC  1231

seq1: chr1_81764211_81765296
seq2: B6Ng01-163O14.g_71_1164 (reverse)

seq1  CCTGCCTTTGCAC-ACACACAGCAAAGGGCAAAAATA--GTGGTTGGC-T  46
      |||||||| |||| ||||   ||||||||||||||||  ||||||||| |
seq2  CCTGCCTTGGCACAACACCAGGCAAAGGGCAAAAATAAGGTGGTTGGCTT  50

seq1  ACTTA-GAGATTGGAGCTTAGAGGTTGGAAA-TGC-AGTAAACTTGCCCG  93
      ||||| ||||||||||||||||||||||||| ||| |||||||||| |||
seq2  ACTTAGGAGATTGGAGCTTAGAGGTTGGAAATTGCAAGTAAACTTGGCCG  100

seq1  GATTAACTTTTGTCATGGTACTCTATCTAAGCACCTGCAATCATCTTTC-  142
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GATTAACTTTTGTCATGGTACTCTATCTAAGCACCTGCAATCATCTTTCT  150

seq1  TCTTTAGGCAAAGGAGGGCAAGCAGGATCACAAAGACTGACTTTTCAACC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGCAAAGGAGGGCAAGCAGGATCACAAAGACTGACTTTTCAACC  200

seq1  TTTCTCTCCTTACTCTGAATTACTGAGCAACTCTTCAGAACCAATCATCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCTTACTCTGAATTACTGAGCAACTCTTCAGAACCAATCATCT  250

seq1  GCCAATTCATTTTCCTGATTTATTTCACTCAATTCCTAAAACAATCTATT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTCATTTTCCTGATTTATTTCACTCAATTCCTAAAACAATCTATT  300

seq1  TTGCAAACATAGGCATTAAGGCTTAGTGAAGTGAAGTTATTTCAGAGGGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACATAGGCATTAAGGCTTAGTGAAGTGAAGTTATTTCAGAGGGT  350

seq1  CAAGGTGCTAATACCAAGCAGAACTAGCAATCATACCTAGGTCTGCTTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGCTAATACCAAGCAGAACTAGCAATCATACCTAGGTCTGCTTCT  400

seq1  GGCTGCTCTCTAAGCATAAGGCTGTGTATTCTGCTTGGCAAAAGGTTGTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCTCTAAGCATAAGGCTGTGTATTCTGCTTGGCAAAAGGTTGTC  450

seq1  AGCTGGCCGCGCTGCATATGAAACCCATTTTGAAATTTTCCAATATATTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCGCGCTGCATATGAAACCCATTTTGAAATTTTCCAATATATTA  500

seq1  GTATTCCAGCATCTGCCCAAGGTGCTACTCCATTTCATCATTCAACAAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCAGCATCTGCCCAAGGTGCTACTCCATTTCATCATTCAACAAAT  550

seq1  ACGCTTGCCTTTCACCATCTGCTAATCTCTGGAGTTAGTTGTTATGGTTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTGCCTTTCACCATCTGCTAATCTCTGGAGTTAGTTGTTATGGTTG  600

seq1  TCTCTGGTTAGAGCTTGTTCCTCCTGTGATTCTGTTAGCCTCTGTCAGCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTTAGAGCTTGTTCCTCCTGTGATTCTGTTAGCCTCTGTCAGCA  650

seq1  GACCTGGAAGTCTAGTTCTCTCCTGAGTCTCAGTGGTCAGAGTACTCTCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGAAGTCTAGTTCTCTCCTGAGTCTCAGTGGTCAGAGTACTCTCT  700

seq1  GCAGGCAAAATCTCCTCTTGCAGGGAAGGTGCACAGATATCTGGCATTCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAAATCTCCTCTTGCAGGGAAGGTGCACAGATATCTGGCATTCA  750

seq1  GACCTGCCGCCTGGATGAAGATGAAGGCCCAAAACAGGGCCTGTCCCAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCGCCTGGATGAAGATGAAGGCCCAAAACAGGGCCTGTCCCAGA  800

seq1  AGATGGGCTGCCTCTGCAGTCTGCATGCTCACCTATACAGACTGGTCTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCTGCCTCTGCAGTCTGCATGCTCACCTATACAGACTGGTCTCT  850

seq1  GAGGGACACTGGATAGAAGATGGCTCTCTCACCTGCTCTGGCAGTAAAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACACTGGATAGAAGATGGCTCTCTCACCTGCTCTGGCAGTAAAAT  900

seq1  TGCAAAGCGTCTGTAAGGGAAAAGACACTGTCAATAAGACAAAAAGGCCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCGTCTGTAAGGGAAAAGACACTGTCAATAAGACAAAAAGGCCA  950

seq1  CCAACATATTGGGAAAGGATGTTTTCCAATCCTAAATTTGATAGGAGACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATATTGGGAAAGGATGTTTTCCAATCCTAAATTTGATAGGAGACT  1000

seq1  ACTGTCCAATATATACAATGAGCACAAGAAGCTGGAATCCAGAAATTCAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAATATATACAATGAGCACAAGAAGCTGGAATCCAGAAATTCAA  1050

seq1  ATAACCCCATTAAAAAATGGGGTAGAGAGCTAAACAAAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCATTAAAAAATGGGGTAGAGAGCTAAACAAAGAATTC  1094