BAC Information

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BAC

Clone NameB6Ng01-164H17
Chromosome1 (Build37)
Map Location 59,700,986 - 59,803,813
singlet/doubletdoublet
Overlap geneSumo1, LOC100042476, Nol5
Upstream geneAls2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
Downstream geneB430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164H17.bB6Ng01-164H17.g
ACCDH956793DH956794
length8421,189
definitionDH956793|Mus musculus domesticus DNA, BAC clone: B6Ng01-164H17, 5' end.DH956794|Mus musculus domesticus DNA, BAC clone: B6Ng01-164H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,802,974 - 59,803,813)(59,700,986 - 59,702,203)
sequence
gaattccttatcatatagttaccaagcactctgagccaacttgcttcaat
gtcttctcaaagagttctcaccccatgacttcatcattcaatctcatgca
actattactgcagccaagatgatggaactgagaaaccctggtgaggattt
accacagcttacagctgctctccctgtcaaagaacccaggaaagggacac
tagtgagatcagaatggaaaaccagtggcaagagttctgaacgaagctgt
tggctcactgggttacacctcgaaagtcagcaagcatttttagacatgtt
gcttcagcagtaggaaggtgttctcctagaatagttccagggagagggac
atctagaacttgttttatcaaccaacaaagcaaagcttatttaagttttg
cagattacaaaccatctccatatctttttttttattattattttttattg
attggttggttggttggctggttttttgtttgttttgtcatttttgtttt
ttgttttattttttcttgctttggagtctccatgagtgatccagagcatg
tgtcatctcgttgtcataaaaatagggctggaggtaggagggggctggag
atggcacagcagttaagagcactgactgctctcccaaaagctctgagttc
aaatcccagcaaccacatggtggctcacaaccaccagtaatgagatctga
tgccctcttctgtgtgtctgaagacagctacagtgtacttaagatataat
aatacataaatcctttaaaaaaaaatagggctagggctgtggctcaacat
tagagctcttgcctagtatgggacaatccttggtaccatcat
gaattcaacccaggtcccttggaagagcagccagagctgagccatatttc
cagccccaagaaaatatattaattatagatttaaatttgaaatgtggcct
aaagctcatggttagaacagggcaactccactgtaatcacctaaaaggct
tgcttcactgttgtataccacatataaaccatccagacaaaaatattcat
ctgagcagtcagtaaaaatgagttacttttaaattatttctatgttctac
taattcaaattctgaaatgggtcacaagaggaaaaggataacattaggca
tttccttgagttcctaatggtgaaaacagaatgtcttttggcaaagcact
gtatttaatgtcacaatatacaaacctgtctttgacagtatgattctttg
agtttcttgagatgtgttgtcattttcactttgaaatgtatctcactgct
atcctaaggagataaaagaaacattgtttatctacactacttagttaact
tgaaccaaattatttaattttgccttgtcaattaaagttttccaccaaaa
tattctttttagcattcctaactagtttcagtacagcaatctaatcaact
tccaagtaactttttaggcaacccattaaaaaaattcgtaaaacagatgt
tttggtatcaaaattattaatataaatttgtctatcaaagaatgcattcc
tttatgacagcatatccatcaaaatactgtaaaataaaaaagaaccatca
cagtgagcagtggtggcacacgcctttaatcccagcactcaggaggcaga
ggcaggtggatttctgatttcgaggtcaacctggtctacagagtgagttc
caggacatccagggctacacagagaaaccctatctcaaaaaaacaaaaca
aaataaaataaataaaataaataaataaataaagtgaaccatcagaaacc
ctcaaagcaactaaaacaaaacatactctccattcatacaactaaagtgt
ccctgaaggggtcaaactagaagaaaaataaaaactttaaataacataga
aaactttttctagcatgagtgacctcattggagctggtttctctacaata
aataacttgtgattcagttggctaaggctgcggaggggagtaacttgcta
gataatcagatcctctctgctgaaacaagcatatttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59802974_59803813
seq2: B6Ng01-164H17.b_44_884 (reverse)

seq1  TGATGGTACCAAGGATTGT-CCATGCTAGGCAAGAGCTCTACTGCTGAGC  49
      ||||||||||||||||||| |||| |||||||||||||||| || |||||
seq2  TGATGGTACCAAGGATTGTCCCATACTAGGCAAGAGCTCTAATGTTGAGC  50

seq1  CACAGCCCTAGCCCTATTTTTTTTTAAA-GATTTATGTATTATTATATCT  98
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACAGCCCTAGCCCTATTTTTTTTTAAAGGATTTATGTATTATTATATCT  100

seq1  TAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCT  148
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAGTACACTGTAGCTGTCTTCAGACACA-CAGAAGAGGGCATCAGATCT  149

seq1  CATTACTGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAG  199

seq1  AGCTTTTGGGAGAGCAGTCAGTGCTCTTAACTGCTGTGCCATCTCCAGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGGGAGAGCAGTCAGTGCTCTTAACTGCTGTGCCATCTCCAGCC  249

seq1  CCCTCCTACCTCCAGCCCTATTTTTATGACAACGAGATGACACATGCTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTACCTCCAGCCCTATTTTTATGACAACGAGATGACACATGCTCT  299

seq1  GGATCACTCATGGAGACTCCAAAGCAAGAAAAAATAAAACAAAAAACAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACTCATGGAGACTCCAAAGCAAGAAAAAATAAAACAAAAAACAAA  349

seq1  AATGACAAAACAAACAAAAAACCAGCCAACCAACCAACCAATCAATAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAAAACAAACAAAAAACCAGCCAACCAACCAACCAATCAATAAAA  399

seq1  AATAATAATAAAAAAAAAGATATGGAGATGGTTTGTAATCTGCAAAACTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAAAAAAAAAGATATGGAGATGGTTTGTAATCTGCAAAACTT  449

seq1  AAATAAGCTTTGCTTTGTTGGTTGATAAAACAAGTTCTAGATGTCCCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCTTTGCTTTGTTGGTTGATAAAACAAGTTCTAGATGTCCCTCT  499

seq1  CCCTGGAACTATTCTAGGAGAACACCTTCCTACTGCTGAAGCAACATGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAACTATTCTAGGAGAACACCTTCCTACTGCTGAAGCAACATGTC  549

seq1  TAAAAATGCTTGCTGACTTTCGAGGTGTAACCCAGTGAGCCAACAGCTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGCTTGCTGACTTTCGAGGTGTAACCCAGTGAGCCAACAGCTTC  599

seq1  GTTCAGAACTCTTGCCACTGGTTTTCCATTCTGATCTCACTAGTGTCCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAACTCTTGCCACTGGTTTTCCATTCTGATCTCACTAGTGTCCCT  649

seq1  TTCCTGGGTTCTTTGACAGGGAGAGCAGCTGTAAGCTGTGGTAAATCCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGTTCTTTGACAGGGAGAGCAGCTGTAAGCTGTGGTAAATCCTC  699

seq1  ACCAGGGTTTCTCAGTTCCATCATCTTGGCTGCAGTAATAGTTGCATGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTTTCTCAGTTCCATCATCTTGGCTGCAGTAATAGTTGCATGAG  749

seq1  ATTGAATGATGAAGTCATGGGGTGAGAACTCTTTGAGAAGACATTGAAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGATGAAGTCATGGGGTGAGAACTCTTTGAGAAGACATTGAAGC  799

seq1  AAGTTGGCTCAGAGTGCTTGGTAACTATATGATAAGGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGCTCAGAGTGCTTGGTAACTATATGATAAGGAATTC  841

seq1: chr1_59700986_59702203
seq2: B6Ng01-164H17.g_66_1254

seq1  GAATTCAACCCAGGTCCCTTGGAAGAGCAGCCAGAGCTGAGCCATATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCAGGTCCCTTGGAAGAGCAGCCAGAGCTGAGCCATATTTC  50

seq1  CAGCCCCAAGAAAATATATTAATTATAGATTTAAATTTGAAATGTGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAAGAAAATATATTAATTATAGATTTAAATTTGAAATGTGGCCT  100

seq1  AAAGCTCATGGTTAGAACAGGGCAACTCCACTGTAATCACCTAAAAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCATGGTTAGAACAGGGCAACTCCACTGTAATCACCTAAAAGGCT  150

seq1  TGCTTCACTGTTGTATACCACATATAAACCATCCAGACAAAAATATTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACTGTTGTATACCACATATAAACCATCCAGACAAAAATATTCAT  200

seq1  CTGAGCAGTCAGTAAAAATGAGTTACTTTTAAATTATTTCTATGTTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGTCAGTAAAAATGAGTTACTTTTAAATTATTTCTATGTTCTAC  250

seq1  TAATTCAAATTCTGAAATGGGTCACAAGAGGAAAAGGATAACATTAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAATTCTGAAATGGGTCACAAGAGGAAAAGGATAACATTAGGCA  300

seq1  TTTCCTTGAGTTCCTAATGGTGAAAACAGAATGTCTTTTGGCAAAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGAGTTCCTAATGGTGAAAACAGAATGTCTTTTGGCAAAGCACT  350

seq1  GTATTTAATGTCACAATATACAAACCTGTCTTTGACAGTATGATTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAATGTCACAATATACAAACCTGTCTTTGACAGTATGATTCTTTG  400

seq1  AGTTTCTTGAGATGTGTTGTCATTTTCACTTTGAAATGTATCTCACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTGAGATGTGTTGTCATTTTCACTTTGAAATGTATCTCACTGCT  450

seq1  ATCCTAAGGAGATAAAAGAAACATTGTTTATCTACACTACTTAGTTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAGGAGATAAAAGAAACATTGTTTATCTACACTACTTAGTTAACT  500

seq1  TGAACCAAATTATTTAATTTTGCCTTGTCAATTAAAGTTTTCCACCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAAATTATTTAATTTTGCCTTGTCAATTAAAGTTTTCCACCAAAA  550

seq1  TATTCTTTTTAGCATTCCTAACTAGTTTCAGTACAGCAATCTAATCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTTAGCATTCCTAACTAGTTTCAGTACAGCAATCTAATCAACT  600

seq1  TCCAAGTAACTTTTTAGGCAACCCATTAAAAAAATTCGTAAAACAGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTAACTTTTTAGGCAACCCATTAAAAAAATTCGTAAAACAGATGT  650

seq1  TTTGGTATCAAAATTATTAATATAAATTTGTCTATCAAAGAATGCATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATCAAAATTATTAATATAAATTTGTCTATCAAAGAATGCATTCC  700

seq1  TTTATGACAGCATATCCATCAAAATACTGTAAAATAAAAAAGAACCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACAGCATATCCATCAAAATACTGTAAAATAAAAAAGAACCATCA  750

seq1  CAGTGAGCAGTGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCAGTGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCAGA  800

seq1  GGCAGGTGGATTTCTGATTTCGAGGTCAACCTGGTCTACAGAGTGAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGATTTCTGATTTCGAGGTCAACCTGGTCTACAGAGTGAGTTC  850

seq1  CAGGACATCCAGGGCTACACAGAGAAACCCTATCTCAAAAAAAACAAAAA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  CAGGACATCCAGGGCTACACAGAGAAACCCTATCTC-AAAAAAACAAAA-  898

seq1  CAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAGTGAACCAT  950
        |||||||||| ||||||||||||   |||||||   ||||||||||||
seq2  -CAAAATAAAAT-AAATAAAATAAA--TAAATAAA--TAAAGTGAACCAT  942

seq1  CAGAAACCCTCAAAAGCAACTAAAACAAAACATACTCTCCCATTCATACC  1000
      ||||||||||| |||||||||||||||||||||||||| ||||||||| |
seq2  CAGAAACCCTC-AAAGCAACTAAAACAAAACATACTCT-CCATTCATA-C  989

seq1  AACTAAAGTGTCCCTGAAGGTGGTCAAACCTAGAAGAAAAATATAAACTT  1050
      |||||||||||||||||||| ||||||| |||||||||||||| ||||||
seq2  AACTAAAGTGTCCCTGAAGG-GGTCAAA-CTAGAAGAAAAATAAAAACTT  1037

seq1  TAAAATAACATAGAAAACCTTTTTCTAGCATGAAGTGA-CTCATTGAAGC  1099
      | ||||||||||||||| |||||||||||||| ||||| ||||||| |||
seq2  T-AAATAACATAGAAAA-CTTTTTCTAGCATG-AGTGACCTCATTGGAGC  1084

seq1  TGGTTTCTCTACAATAAATAAAACCTTTGGTGATTCAGGTTTGGGCTAAA  1149
      |||||||||||||||||||||   |||  |||||||||   | |||||| 
seq2  TGGTTTCTCTACAATAAATAA---CTT--GTGATTCAG---TTGGCTAAG  1126

seq1  GCTGCGGAGTGGAGT-ACTTGTCTTAGACTCCATCCCCAGCATCCTCTCT  1198
      ||||||||| ||||| |||||       ||  ||   ||| |||||||||
seq2  GCTGCGGAGGGGAGTAACTTG-------CTAGATAATCAG-ATCCTCTCT  1168

seq1  GCTGAAACAAGC-TATTTAAC  1218
      |||||||||||| ||||||||
seq2  GCTGAAACAAGCATATTTAAC  1189