BAC Information

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BAC

Clone NameB6Ng01-164O02
Chromosome1 (Build37)
Map Location 85,101,716 - 85,183,325
singlet/doubletdoublet
Overlap geneA530032D15Rik, LOC100039742, LOC100040158, LOC621835
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723
Downstream geneEG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164O02.bB6Ng01-164O02.g
ACCDH957091DH957092
length1,078651
definitionDH957091|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O02, 5' end.DH957092|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,182,244 - 85,183,325)(85,101,716 - 85,102,373)
sequence
gaattcacattgcttagctcatctgctgtagtgacttttcatccttccct
tctgtgatacagggagtcacagctcttaactccagtcctgggctgagagc
tagagacaagcatgacataagatatagtcacctgagaggtggtcccacta
ctgcccactgtgctagaattccctacttcaccctattggtcattgtttaa
tgtagatagcaactttgacaaaatacttggggtcagtcagggctactgtt
acaatcttctcttccagtcattgggcattctgtgtatactttgtaattaa
gcatcacacagaggagaaaataatgctttgcttgggaaaagagattctgg
gtatctcaatgcagacatgatggttgtaatgagaacacaagactttctga
cacaaaccagtcatcaccagcaagtttaaacagtcctatcataagttgag
aagctggcatgtgatgctgactgtgacacagaaatttccagagtccacac
ttctgagcagatgaagctgggagacttgtaaaaatggaaatggatcttgg
attctgtttctctgggaattctgttcttacaaacagaaacacaaaataag
aggcaactgcctcttgttgctatgaaatactgcacccaagaattaaggat
ggtttcatcggctgaacagttctagcttgtttgagagacccagtctgaga
tgttcttagcatgctggggaaggtagaggtactggcctttaaagtaattg
ttggacaggttatatcgtagcttccttctagaaaatggagtaggcaaaac
atcctggggattcagaattcaagcaagctagacaataatgccaaggacaa
attatacgatagcctggagttcagattcttagtgagctttgaagccagag
ttcagtgatatgtggcctgttgacgttctatgctaatagcatactaactt
ctccaacttaagcagtcacattcaaggaggatgtagctctacacacatta
cagagcatgggggaggagactcaggctgtaaaccagaaaagaggcagtag
aggaggaatgagaggtgacgttaggata
gaattccacagacagtgcaagggtagcaaagattaatgcagccatcccta
tgcccgtcagattgataaccacaacaaaaatgtcttcaaagacagaaact
gcaaacactcagagacagataccaccacctgcttatatgaaaggcactga
gccagtgattaaccaccctatttattcccaaaagacacagcacactgctg
gtatcactagtggacttgaccaaatgtcacaggagaaatggtgctttctt
aggacatctgcaggagcagaagtagccctgactgagtccctgttgggggc
atcacacaccttcatctcatcttttctatttttattttgaattatgcatg
tatgagtctgtctcagtgtgcttcctgcacgcaagtacagcgtcgtgtcc
atggaaggcagaaaaggctgtctgatctggagttggcatgagaggcagtt
ggaagccctaggataggtgctggggacccaacccatgcccgctactaggg
caatacgagtgcttaaacctgggccatctctgctatcgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgagagagagagagagagcgagagagagagatagag
acagagagtttagtgacagagagacagagactgagagacagagagaattt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85182244_85183325
seq2: B6Ng01-164O02.b_49_1126 (reverse)

seq1  TATCCTTAATGTCACCTCTCATTTCCTCCTCTACTGCCTTCTTTTCTGGT  50
      ||||| ||| ||||||||||| |||||||||||||||| |||||||||||
seq2  TATCC-TAACGTCACCTCTCA-TTCCTCCTCTACTGCC-TCTTTTCTGGT  47

seq1  TTTCAGCCTGTGTCTTCCTTCCCCCATGCTCTTGTATTGTGTGTAGAGCT  100
      || ||||||| ||||  | |||||||||||| |||| |||||||||||||
seq2  TTACAGCCTGAGTCT--CCTCCCCCATGCTC-TGTAATGTGTGTAGAGCT  94

seq1  ACATCCTCCTTGAATGTTGACTGCTTTAAGTTGGAGAAGTTAGTATGCTA  150
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  ACATCCTCCTTGAATG-TGACTGC-TTAAGTTGGAGAAGTTAGTATGCTA  142

seq1  TTAGCATAG-ACTTCAACAGGCCACATATCACTGAACTCTGGCTTCAAAG  199
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAGAACGTCAACAGGCCACATATCACTGAACTCTGGCTTCAAAG  192

seq1  CTCACTAAGAATCTGAACTCCAGGCTATCGTATAATTTGTCCTTGGCATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAAGAATCTGAACTCCAGGCTATCGTATAATTTGTCCTTGGCATT  242

seq1  ATTGTCTAGCTTGCTTGAATTCTGAATCCCCAGGATGTTTTGCCTACTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTAGCTTGCTTGAATTCTGAATCCCCAGGATGTTTTGCCTACTCC  292

seq1  ATTTTCTAGAAGGAAGCTACGATATAACCTGTCCAACAATTACTTTAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAGAAGGAAGCTACGATATAACCTGTCCAACAATTACTTTAAAG  342

seq1  GCCAGTACCTCTACCTTCCCCAGCATGCTAAGAACATCTCAGTCTGGGTC  399
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCAGTACCTCTACCTTCCCCAGCATGCTAAGAACATCTCAGACTGGGTC  392

seq1  TCTCAAACAAGCTAGAACTGTTCAGCCGATGAAACCATCCTTAATTCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACAAGCTAGAACTGTTCAGCCGATGAAACCATCCTTAATTCTTG  442

seq1  GGTGCAGTATTTCATAGCAACAAGAGGCAGTTGCCTCTTATTTTGTGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGTATTTCATAGCAACAAGAGGCAGTTGCCTCTTATTTTGTGTTT  492

seq1  CTGTTTGTAAGAACAGAATTCCCAGAGAAACAGAATCCAAGATCCATTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTAAGAACAGAATTCCCAGAGAAACAGAATCCAAGATCCATTTC  542

seq1  CATTTTTACAAGTCTCCCAGCTTCATCTGCTCAGAAGTGTGGACTCTGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTACAAGTCTCCCAGCTTCATCTGCTCAGAAGTGTGGACTCTGGA  592

seq1  AATTTCTGTGTCACAGTCAGCATCACATGCCAGCTTCTCAACTTATGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTGTCACAGTCAGCATCACATGCCAGCTTCTCAACTTATGATA  642

seq1  GGACTGTTTAAACTTGCTGGTGATGACTGGTTTGTGTCAGAAAGTCTTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGACTGTTTAAACTTGCTGGTGATGACTGGTTTGTGTCAGAAAGTCTTGT  692

seq1  ATTCTCATTACAACCAACACGTCTGCATTTGGATACCCAGAGTCTCTTTT  749
       ||||||||||||||| || |||||||||  |||||||||| ||||||||
seq2  GTTCTCATTACAACCATCATGTCTGCATTGAGATACCCAGAATCTCTTTT  742

seq1  CCCAAGCAAAGCCTTATTTT---CTCTGTGTGATGCTTAATTACAAAGTA  796
      |||||||||||| |||||||   |||||||||||||||||||||||||||
seq2  CCCAAGCAAAGCATTATTTTCTCCTCTGTGTGATGCTTAATTACAAAGTA  792

seq1  TACACAGAATGCCCAATGACTGGAAGAGAAGATTGTAACAGTAGCCCTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAATGCCCAATGACTGGAAGAGAAGATTGTAACAGTAGCCCTGA  842

seq1  CTGACCCCAAGTATTTTGTCAAAGTTGCTATCTACATTAAACAATGACCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCAAGTATTTTGTCAAAGTTGCTATCTACATTAAACAATGACCA  892

seq1  ATAGGGTGAAGTAGGGAATTCTAGCACAGTAGGCAGTAGCAGGACCACCT  946
      |||||||||||||||||||||||||||||| ||||||||  |||||||||
seq2  ATAGGGTGAAGTAGGGAATTCTAGCACAGTGGGCAGTAGTGGGACCACCT  942

seq1  CTCAGGTGAGTATATCTTACGTCATGCTTGTCTCTAGCTCTCAGCCTAGG  996
      ||||||||| ||||||||| |||||||||||||||||||||||||| |||
seq2  CTCAGGTGACTATATCTTATGTCATGCTTGTCTCTAGCTCTCAGCCCAGG  992

seq1  ACTAGAGCTAAGAGCTGTGACTCCCTGTATCACAGAAGGGAAGGATGAAA  1046
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTTAAGAGCTGTGACTCCCTGTATCACAGAAGGGAAGGATGAAA  1042

seq1  AGTCACTACAGCAGATGAGCTAAGCAATGTGAATTC  1082
      ||||||||||||||||||||||||||||||||||||
seq2  AGTCACTACAGCAGATGAGCTAAGCAATGTGAATTC  1078

seq1: chr1_85101716_85102373
seq2: B6Ng01-164O02.g_68_718

seq1  GAATTCCACAGACAGTGCAAGGGTAGCAAAGATCAATGCAGCCATCCCTA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCCACAGACAGTGCAAGGGTAGCAAAGATTAATGCAGCCATCCCTA  50

seq1  CGCCTGTCAGATTGATAACCACAACAAAAATGTCTTCAAAGACAGAAACT  100
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGTCAGATTGATAACCACAACAAAAATGTCTTCAAAGACAGAAACT  100

seq1  GCAAATACTCAGAGACAGATACCTCCACCTGCTTATATGAAAGGCACTGA  150
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCAAACACTCAGAGACAGATACCACCACCTGCTTATATGAAAGGCACTGA  150

seq1  GCCAGTGATTAACCACCCTATTTATTCCCAAAAGACACAGCACACTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGATTAACCACCCTATTTATTCCCAAAAGACACAGCACACTGCTG  200

seq1  GTATCACTAGTGGACTTGATCAAATGTCACAGGAGAAATGGTGCTTTCTT  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTATCACTAGTGGACTTGACCAAATGTCACAGGAGAAATGGTGCTTTCTT  250

seq1  AGGACATCTGCAGGAGCAGAAGTAGCCCTGACTGAGTCCCTGTTGGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCTGCAGGAGCAGAAGTAGCCCTGACTGAGTCCCTGTTGGGGGC  300

seq1  ATCACACACCTTCATCTCATCTTTTCTATTTTTATTTTGAATTATGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACACCTTCATCTCATCTTTTCTATTTTTATTTTGAATTATGCATG  350

seq1  TATGAGTCTGTCTCAGTGTGCTTCCTGCACGCAAGTACAGTGTCGTGTCC  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATGAGTCTGTCTCAGTGTGCTTCCTGCACGCAAGTACAGCGTCGTGTCC  400

seq1  ATGGAAGGCAGAAAAGGCTGTCTGATCTGGAGTTGGCATGAGAGGCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGCAGAAAAGGCTGTCTGATCTGGAGTTGGCATGAGAGGCAGTT  450

seq1  GGAAGCCCTAGGATAGGTGCTGGGGACCCAACCCATGCCCACTACTAGGG  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAAGCCCTAGGATAGGTGCTGGGGACCCAACCCATGCCCGCTACTAGGG  500

seq1  CAATACGAGTGCTTAAACCTGGGCCATCTCTCCTATCGTGTGTGTGTGTG  550
      ||||||||||||||||||||||||||||||| |||||      |||||||
seq2  CAATACGAGTGCTTAAACCTGGGCCATCTCTGCTATC------GTGTGTG  544

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAG  600
      |||||||||||||||||||||| | ||||||||||||| |||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGCGAGAGAGAGAG  594

seq1  AGAGAGAAAGAGAGAGACAGAGAGACAGAGACAGAGACAGAGAGACAGAG  650
      | ||||| ||||||    || || | |||||||||||| |||||||||||
seq2  ATAGAGACAGAGAG-TTTAGTGACAGAGAGACAGAGACTGAGAGACAGAG  643

seq1  AGAATTTG  658
      ||||||||
seq2  AGAATTTG  651