BAC Information

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BAC

Clone NameB6Ng01-165E01
Chromosome10 (Build37)1 (Build37)
Map Location 50,389,221 - 50,390,25717,425,136 - 17,425,651
singlet/doubletsingletsinglet
Overlap geneAscc3
Upstream geneGrik2, LOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165E01.bB6Ng01-165E01.g
ACCDH957363DH957364
length1,1111,153
definitionDH957363|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E01, 5' end.DH957364|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,389,221 - 50,390,257)(17,425,136 - 17,425,651)
sequence
gaattctctggtggaacttttggggtcacttaagtatactatcatatcat
ctgcaaatagtgatattttgacttcctttccaatttgtatccctttgacc
tccttttgttatctaattgctctggttaggacttcgggtactatattgag
agagtgggcagccttgtctagtccttgattttagtgggattgcttcaagt
ttctctccatttactttgatattggctactggtttgctgtatatatcgct
tttactatgtttaggtatgggccttgaattcctgatttttccaagacttt
taccatgaaggggtgttgaattttgtcaaatgctttcttagcatctaatg
agatgatcttgagcttcttgaagctcaagaagaaggaagaccaaagtgtc
ttcagtccttagaagggggaacaaaatactcagataggaaatatggagac
aatgtagagcagaaacagaaggaaaggccatccagagtctgccccacctg
gggacccatctcatatatactcaccaaactcagacactgggttggtgcaa
agaagtgcttgctgtcaggagcctgtaggaaatggaaggaatacatgatg
taattatataataattcccaaaatagaagaaatgggaaatatgattctat
ggcttcccatcttctccctctttgctataactactgtgtaaataatgttt
ttaattctttaaaagtcagtataaggttttcacagattcatttcttaatt
gcctgtagttagttcttcgtgtagggtcgagacctccacacaagggatgc
caagaagtgcttgctgacaggagcctgatatagctgtcttttgagaggct
ctgccagagcttaacaaatatagaagcgaatgctcgtagccaaccattgg
actgagcactgggtccccaatggaggagttagagaaggagctgatggggt
ttgcaaccccataggaagaacaaccatatcaccaaccaggatgccaaccc
ccaaagctccaagggccaaaccaccaatcaagaagtaccattgtaaggac
ccatggctccttgctgctcttgtagcaaagaagttcttgtcagcattcaa
tgggaggagaa
gaattctcatctgaggaatatcgaatggctgagaagcaccggaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaacaatcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaagatccagcaatacctctcctgggc
atttatccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaacgtggcacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtgggtattagcccaaaact
taggatattcaagatataagatacaatttgttaatcgcatgaaactcaag
aagaatgatgaccaaagtgtggacactgtgccccttcttagaattgggaa
caaaacactcatggaaggagttacagagataaagcttggagctgtgacga
aaggatggaccatctagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattacatatactagcaagattttgctgaaa
ggacccagatatagctgtctcttgtgagactatgccagggcctagcaaac
acagaagtggatgatcacagtcagctattgggatggattacaggctccca
atgaggagctagagaaagtacccaaggagctaatggatctgcaaccctat
attggaacaccatttttactatcagtatcccgaagcctctgactctagct
gcatatgtatcaaagatgctagtcagccttactggaaaggagggccattg
acattacaacttaatgcctgtacaggcatgctaggctaaatgttgtgata
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_50389221_50390257
seq2: B6Ng01-165E01.b_121_1154

seq1  TTCCAATTTGTATCCCTTTGACCTCCTTTTGTTATCTAATTGCTCTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTGTATCCCTTTGACCTCCTTTTGTTATCTAATTGCTCTGGTT  50

seq1  AGGACTTCGGGTACTATATTGAGAGAGTGGGCAGCCTTGTCTAGTCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCGGGTACTATATTGAGAGAGTGGGCAGCCTTGTCTAGTCCTTG  100

seq1  ATTTTAGTGGGATTGCTTCAAGTTTCTCTCCATTTACTTTGATATTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTGGGATTGCTTCAAGTTTCTCTCCATTTACTTTGATATTGGCT  150

seq1  ACTGGTTTGCTGTATATATCGCTTTTACTATGTTTAGGTATGGGCCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTGCTGTATATATCGCTTTTACTATGTTTAGGTATGGGCCTTGA  200

seq1  ATTCCTGATTTTTCCAAGACTTTTACCATGAAGGGGTGTTGAATTTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGATTTTTCCAAGACTTTTACCATGAAGGGGTGTTGAATTTTGTC  250

seq1  AAATGCTTTCTTAGCATCTAATGAGATGATCTTGAGCTTCTTGAAGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTCTTAGCATCTAATGAGATGATCTTGAGCTTCTTGAAGCTCA  300

seq1  AGAAGAAGGAAGACCAAAGTGTCTTCAGTCCTTAGAAGGGGGAACAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGGAAGACCAAAGTGTCTTCAGTCCTTAGAAGGGGGAACAAAAT  350

seq1  ACTCAGATAGGAAATATGGAGACAATGTAGAGCAGAAACAGAAGGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGATAGGAAATATGGAGACAATGTAGAGCAGAAACAGAAGGAAAGG  400

seq1  CCATCCAGAGTCTGCCCCACCTGGGGACCCATCTCATATATACTCACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGAGTCTGCCCCACCTGGGGACCCATCTCATATATACTCACCAA  450

seq1  ACTCAGACACTGGGTTGGTGCAAAGAAGTGCTTGCTGTCAGGAGCCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACACTGGGTTGGTGCAAAGAAGTGCTTGCTGTCAGGAGCCTGTA  500

seq1  GGAAATGGAAGGAATACATGATGTAATTATATAATAATTCCCAAAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGAAGGAATACATGATGTAATTATATAATAATTCCCAAAATAGA  550

seq1  AGAAATGGGAAATATGATTCTATGGCTTCCCATCTTCTCCCTCTTTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGGAAATATGATTCTATGGCTTCCCATCTTCTCCCTCTTTGCTA  600

seq1  TAACTACTGTGTAAATAATGTTTTTAATTCTTTAAAAGTCAGTATAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACTGTGTAAATAATGTTTTTAATTCTTTAAAAGTCAGTATAAGGT  650

seq1  TTTCACAGATTCATTTCTTAATTGCCTGTAGTTAGTTCTTCGTGTAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGATTCATTTCTTAATTGCCTGTAGTTAGTTCTTCGTGTAGGGT  700

seq1  CGAGACCTCCACACAAGGGATGCCAAGAAGTGCTTGCTGACAGGAGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACCTCCACACAAGGGATGCCAAGAAGTGCTTGCTGACAGGAGCCTG  750

seq1  ATATAGCTGTCTTTTGAGAGGCTCTGCCAGAGCTTAACAAATATAGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTGTCTTTTGAGAGGCTCTGCCAGAGCTTAACAAATATAGAAGC  800

seq1  GAATGCTCGTAGCCAACCATTGGACTGAGCACTGGGTCCCCAATGGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTCGTAGCCAACCATTGGACTGAGCACTGGGTCCCCAATGGAGGA  850

seq1  GTTAGAGAAGGAGCTGAAGGGGTTTGCAACCCCATAGGAAGAACAACAAT  900
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  GTTAGAGAAGGAGCTGATGGGGTTTGCAACCCCATAGGAAGAACAACCAT  900

seq1  ATCAACCAACCAGGATGCCAACCCCCCAGAGCTCCCAGGGGCCAAACCAC  950
      ||| ||||||||||||||||| |||||| |||| ||| ||||||||||||
seq2  ATC-ACCAACCAGGATGCCAA-CCCCCAAAGCT-CCAAGGGCCAAACCAC  947

seq1  CAATCAAAGAGTACACATGTAAGGACCCATGGCTCC-TGCTGCATCTGTA  999
      |||||||  |||||   ||||||||||||||||||| ||||||   ||||
seq2  CAATCAAGAAGTACCATTGTAAGGACCCATGGCTCCTTGCTGCTCTTGTA  997

seq1  GCAAAGGATGTTCTTGTCAGGCATCAATGGGAGGAGAA  1037
      ||||| || |||||||||||   |||||||||||||||
seq2  GCAAA-GAAGTTCTTGTCAGCATTCAATGGGAGGAGAA  1034

seq1: chr1_17425136_17425651
seq2: B6Ng01-165E01.g_868_1219 (reverse)

seq1  CACTATCACAACATTTATCAAAACTGAATCTTAGTTTCTGTCCCTTCTTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GACATTTTTTTTTCACATTTTTTTTCTGATTAGGTATTTTCTTCATTTAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTCAAATGCTATCCCAAAAGTCCCCCATAAACCCTCCCCCCCACTCCG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATACCCACCCACT---CCCACTTTTGGCCCTGGCATTCTCCTATACTGAG  197
               ||||    | || ||| | ||| ||||   ||| |||  ||
seq2  ---------CACTATCACAACATTTAG-CCTAGCAT--GCCTGTAC--AG  36

seq1  GCATATAAAGTTTGCAAGACCAATGGGACTCACTTTCCAATGAGGGCCGA  247
      |||| |||   ||| ||   ||||||  ||| ||||||| | | ||| ||
seq2  GCAT-TAA--GTTGTAATGTCAATGGCCCTC-CTTTCCAGT-AAGGCTGA  81

seq1  CTAGGCCATCTTCTGATACATATGCAGCTAGAAACAGGAGCTCTGGTGGG  297
      ||||  |||||| |||||||||||||||||||  |||  |||  |  || 
seq2  CTAG--CATCTT-TGATACATATGCAGCTAGAGTCAGAGGCTTCG--GGA  126

seq1  TACTGGTTAGTTCACATTGTTGTTACACTTATAGAATTTCAAACCCATTT  347
      |||| | ||| | | | || |||| ||  |||||  || || | ||| ||
seq2  TACT-GATAG-TAAAAATGGTGTTCCA-ATATAGGGTTGCAGATCCA-TT  172

seq1  AGCTCCTTGGGTACTATCTCTAGCTCCTCCATTGGGGGCCTTGTGATTCA  397
      ||||||||||||||| |||||||||||| ||||||| ||| ||| || ||
seq2  AGCTCCTTGGGTACTTTCTCTAGCTCCT-CATTGGGAGCC-TGTAATCCA  220

seq1  T-CCAATAGCTGACTGTGAACACCCACTTCTGTGTTTGCTAGGCACTGGC  446
      | ||||||||||||||||| || ||||||||||||||||||||| |||||
seq2  TCCCAATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCCCTGGC  270

seq1  ATAGCCTCACA------------ATCTGGGTCCTTTCAGCAAAATCTTGC  484
      |||| ||||||            |||||||||||||||||||||||||||
seq2  ATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGC  320

seq1  TAGTGTAAGCAAAGGTGTCAGCATATGGAGGC  516
      |||| || | || ||||||||||| |||| ||
seq2  TAGTATATGTAATGGTGTCAGCATTTGGAAGC  352