BAC Information

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BAC

Clone NameB6Ng01-165G16
Chromosome1 (Build37)
Map Location 172,082,376 - 172,208,301
singlet/doubletdoublet
Overlap geneUap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571
Downstream geneEG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165G16.bB6Ng01-165G16.g
ACCDH957479DH957480
length9681,080
definitionDH957479|Mus musculus domesticus DNA, BAC clone: B6Ng01-165G16, 5' end.DH957480|Mus musculus domesticus DNA, BAC clone: B6Ng01-165G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,207,324 - 172,208,301)(172,082,376 - 172,083,457)
sequence
gaattcatactgaattctgagtcttggcctgtctccccccccccccacac
gcacgcactctgaagtcacgattgcatcaatctctacacctgggaagagg
accctgaataaagtcttcctccatgtctgtaacacgcatgataaagggtt
tggtgttgctcagtttcttcatctattaaatgaccatggatcctgcttgt
ctcatgaaaacactgaacatcggataaaaagaaatgatgaaatgcaattt
ggtaaagccctttatcaacctgaaagcatatgaaatcttagcattttaaa
tacagaaagtgaatgcgtccaaccaacctttcatgccatattaaagcccc
ccccgcccccccccccgaccctctccacatcacataaagaggcacgctga
gaaaatgctgctatgtcctttctttctccccatcaccttctctccttcct
tccttggctacactcttctgttatctcaaactctgcacatgtggcatgca
caattgaaagaggaaggacggctcattagctgggcaaggacatccttctg
tcctctcctgccattgcctgtcccattcctattccaaaatataatgagat
actactccctgaacatatggctgccatcgaggttcgcctgcttgaagatg
aggatactcacgtagacacagaggcacaagactcctggcacagactcgct
gtctcttatcagagagtagacgtccacacctcccttgacgagcaaggctt
cacactctcgcttggtcaggcagccatgggaaaaggcacatccatggagg
gttgtgatgtataaaccgccctgtcaccctgatatcagtcccggccaagg
aggtgctgtgaataggaagtgattaggagtggaagagtctgttcatcact
gtggtctaaactaatgatgttgctctgtagcggtcagtttacagacacgg
gaactgagaaggaatgga
gaattcttagactccctgaggtgagcctaaccagccagtaccataatctc
ttaacatcacggacccgagtctaataccgggaaggaaaccgtgaaccatt
taccctttgcaccgacttaaaaacggagggcaattccaccacagtggacg
acactgaagacaccaaaactctccaaagcctgaggcagaaagactgcttc
taccattaagccaaacctggattacgaagtgagacctaattatttaatta
attacttgattaattgaatgttcaaatgaagtgaataaccaatttaacaa
tcaaataaataaaaggaatcctgaaaggcactgttttataatgcaatgtg
taccatggtgttttccaaaatctatcccaatctgaaaaccataacataaa
tctatgtggaccagtcagcttgcatctctgcttcatcaaatgacttcata
atatatgcttggctgggacgatcccattctcctggtggcaagcatagcaa
ccagtaggtacttcatttacatatagcacttagaggtacatacacaagct
ggctgaccatggattcctacacatcttattgcctgtgtagtcaacatagg
gggacagtactacctggagagaatctttcaaccaaagtagcatagtaata
ggagaggaaacagagaagatttaaaccagtcaggggctgttcatgacgcc
tgccagtcaagctctccctccctagctctccagtaggtgcctttcctagg
cagagagtttccagtttttacaatgcacatgagatttattttccagtcac
cactatgcacccccacaaccaaatagccacgagaataaaaaataattata
tccatttgcactgcttttcatttaatctatatgcaaaggatttgcttcca
tactattggacatttacatagtataaaagtctaattacaaagagtttccc
aactgcatattcattgggaagtcagttgtatataaagataatttacggga
ataaaggtaagagagctgatcatagttatatgcttggataagcaagaatc
caagatagacacattaatcgatggcttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172207324_172208301
seq2: B6Ng01-165G16.b_41_1008 (reverse)

seq1  TCCATTTCCCTCCCTTCTCATTTCCTGTGTCTTGTAAAACTGAACCCTAC  50
      ||||||      |||||||| |||| ||||| ||| ||||||| | ||||
seq2  TCCATT------CCTTCTCAGTTCCCGTGTC-TGT-AAACTGACCGCTAC  42

seq1  AGAGCAACCTCATTTGTTTAGACCACAGTGGAGGAACAGAC-CTTCCACT  99
      |||||||| ||||| |||||||||||||| || |||||||| ||||||||
seq2  AGAGCAACATCATTAGTTTAGACCACAGT-GATGAACAGACTCTTCCACT  91

seq1  CCTCTTCACTTCCCTCTTCACAGCACCTCCTTGGCCTGGGACTGATCTCA  149
      |||  |||||| ||| |||||||||||||||||||| ||||||||| |||
seq2  CCTAATCACTT-CCTATTCACAGCACCTCCTTGGCC-GGGACTGATATCA  139

seq1  GGGTGACAGGGCGGTTTAAACATAACAACCCTCCATGGATCTGCCTTACT  199
      |||||||||||||||||| |||| |||||||||||||||| ||||||  |
seq2  GGGTGACAGGGCGGTTTATACATCACAACCCTCCATGGATGTGCCTT-TT  188

seq1  ACCATGGCTGCCTGACCAAGCGAGAGTGTGAAGCCCTGCTCCTCAAGGGA  249
       |||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  CCCATGGCTGCCTGACCAAGCGAGAGTGTGAAGCCTTGCTCGTCAAGGGA  238

seq1  GGTGTGGATGGCAACTTTCTGATAAGAGACAGCGAGTCTGTGCCAGGAGC  299
      |||||||| | | ||| |||||||||||||||||||||||||||||||| 
seq2  GGTGTGGACGTCTACTCTCTGATAAGAGACAGCGAGTCTGTGCCAGGAGT  288

seq1  CCTGTGCCTCTGTGTCT-CGTGAGTATCCTCATCTTCATGCAGGCGAACC  348
      | ||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CTTGTGCCTCTGTGTCTACGTGAGTATCCTCATCTTCAAGCAGGCGAACC  338

seq1  CTGATGGCAGCCATATGTTCAGGGAGTTGTATCTCATTCTATTTTGGAAT  398
        ||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  TCGATGGCAGCCATATGTTCAGGGAGTAGTATCTCATTATATTTTGGAAT  388

seq1  AGGAATGGGCCAGGCACTGCCAGGAGAGGACAGAAGGATGTCCCTGCCCA  448
      ||||||||| |||||| || ||||||||||||||||||||||| ||||||
seq2  AGGAATGGGACAGGCAATGGCAGGAGAGGACAGAAGGATGTCCTTGCCCA  438

seq1  GCTCTTCTGCCGGCCTTCCTCTCTCAATTGTGCATGCCACATGAGCAGAG  498
      |||  |  |||| ||||||||| |||||||||||||||||||| ||||||
seq2  GCTAATGAGCCGTCCTTCCTCTTTCAATTGTGCATGCCACATGTGCAGAG  488

seq1  TCTGAGACAACAGAAGAGGGTAGACAAGGAAGGAAGGAGAGAAGGTGATG  548
      | ||||| |||||||||| |||| ||||||||||||||||||||||||||
seq2  TTTGAGATAACAGAAGAGTGTAGCCAAGGAAGGAAGGAGAGAAGGTGATG  538

seq1  GGGAGAAAGAACGGACATAGCAGCATTTTCTCTGCGTGCCTCTTTATGTG  598
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  GGGAGAAAGAAAGGACATAGCAGCATTTTCTCAGCGTGCCTCTTTATGTG  588

seq1  ATGTGGAGAAGGTCGGGGGCGGGGGCGGGGGGGGCTTTACTATTGCATGA  648
      ||||||||| ||||||||| ||||||||||||||||||| ||| ||||||
seq2  ATGTGGAGAGGGTCGGGGGGGGGGGCGGGGGGGGCTTTAATATGGCATGA  638

seq1  AAGGTTGGTTGGCTGCATTCACTTGCAGTATTTAAAATGCTAAGATTTCA  698
      ||||||||||||  |||||||||| | |||||||||||||||||||||||
seq2  AAGGTTGGTTGGACGCATTCACTTTCTGTATTTAAAATGCTAAGATTTCA  688

seq1  TATGCTTTCAGGTTGATAAAGGGCTTTACCAAACTGCATTTCCTCATTTC  748
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  TATGCTTTCAGGTTGATAAAGGGCTTTACCAAATTGCATTTCATCATTTC  738

seq1  TTTTTATCCTTTATTTTGTGCTCTTATGAGACAAGCAGGATCCATTGTCA  798
      |||||||||  | ||  ||| | | |||||||||||||||||||| ||||
seq2  TTTTTATCCGATGTTCAGTGTTTTCATGAGACAAGCAGGATCCATGGTCA  788

seq1  TTTTATAGATGAAGAAATTGAGCAACACCAAACCCTTTATCATGCCTGTT  848
      ||| ||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  TTTAATAGATGAAGAAACTGAGCAACACCAAACCCTTTATCATGCGTGTT  838

seq1  ACAGACATGGAGGAAGACTTTATTCAGGGTCCTCTTCACAGGTGTAGAGA  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAGACATGGAGGAAGACTTTATTCAGGGTCCTCTTCCCAGGTGTAGAGA  888

seq1  TTGATGCAATGGTGACTTCAGAGTGTGTGTGTGTGTGTGGGGGGGGAGAT  948
      |||||||||| |||||||||||||| ||| ||||| | ||||||||||| 
seq2  TTGATGCAATCGTGACTTCAGAGTGCGTGCGTGTGGGGGGGGGGGGAGAC  938

seq1  TGGCCTTAACTCAGAATACAGTATGAATTC  978
       ||||   ||||||||| ||||||||||||
seq2  AGGCCAAGACTCAGAATTCAGTATGAATTC  968

seq1: chr1_172082376_172083457
seq2: B6Ng01-165G16.g_66_1145

seq1  GAATTCTTAGCATCCCTCAGGTGAGCCTAACCTGTTACTACCATAATCTC  50
      ||||||||||  ||||| |||||||||||||| |  | ||||||||||||
seq2  GAATTCTTAGACTCCCTGAGGTGAGCCTAACCAGCCAGTACCATAATCTC  50

seq1  TTAACATCACGGACCCGAGTCAAATACCGGGAAGGAAACCGTGGACTAGC  100
      ||||||||||||||||||||| ||||||||||||||||||||| || |  
seq2  TTAACATCACGGACCCGAGTCTAATACCGGGAAGGAAACCGTGAACCATT  100

seq1  TACACATTGCACCAACATAAAATCAAGGCTCAAGCTGAGCACAGTGGACT  150
      ||| | ||||||| || ||||| |   |  |||    | |||||||||| 
seq2  TACCCTTTGCACCGACTTAAAAACGGAGGGCAATTCCACCACAGTGGACG  150

seq1  ACACTGCGGTAACAGAAGCTCTCAAGAAGCTGAGGCAGAAGGACTGCTTC  200
      ||||||  |  ||  || ||||| | |  ||||||||||| |||||||||
seq2  ACACTGAAGACACCAAAACTCTCCAAAGCCTGAGGCAGAAAGACTGCTTC  200

seq1  AAGCATTAAGCCAAACCTGGATTACAGAGTGAGACCTAATTATTTAATTA  250
       | ||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TACCATTAAGCCAAACCTGGATTACGAAGTGAGACCTAATTATTTAATTA  250

seq1  ATTACTTAATTAATTAAATGTTCAGATGAAGTGAATAGCCAATTTAAGAA  300
      ||||||| ||||||| |||||||| |||||||||||| ||||||||| ||
seq2  ATTACTTGATTAATTGAATGTTCAAATGAAGTGAATAACCAATTTAACAA  300

seq1  TCAAATAAGTAAAAGGAATACTGAAAGGCACTGTTTTATAATGCAGTGTG  350
      |||||||| |||||||||| ||||||||||||||||||||||||| ||||
seq2  TCAAATAAATAAAAGGAATCCTGAAAGGCACTGTTTTATAATGCAATGTG  350

seq1  TAGCAGGGTGTTTTCAAAAATCTATCCCAATCTGAAAAGTATAACGTAAA  400
      || || ||||||||| ||||||||||||||||||||||  ||||| ||||
seq2  TACCATGGTGTTTTCCAAAATCTATCCCAATCTGAAAACCATAACATAAA  400

seq1  TCTATGTGGACCAGTCAGCTTGCATCTCTGCTTCAGCAACTGACTTCTTA  450
      ||||||||||||||||||||||||||||||||||| ||| ||||||| ||
seq2  TCTATGTGGACCAGTCAGCTTGCATCTCTGCTTCATCAAATGACTTCATA  450

seq1  AAATATGCAGGGCTGGGACAGTCCCAGTCTCCTGCCAGCAAGCATAGCAA  500
      | ||||||  |||||||||  ||||| |||||||   |||||||||||||
seq2  ATATATGCTTGGCTGGGACGATCCCATTCTCCTGGTGGCAAGCATAGCAA  500

seq1  CCAGTAGGTACTTCATTTACATATAGCACTTAGAGGTACAGACACAAGCT  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAGTAGGTACTTCATTTACATATAGCACTTAGAGGTACATACACAAGCT  550

seq1  GGCTGACCAGGGATTCCTACACATCTTAGTGCCTGTGTAGTCAACAGAGG  600
      ||||||||| |||||||||||||||||| ||||||||||||||||| |||
seq2  GGCTGACCATGGATTCCTACACATCTTATTGCCTGTGTAGTCAACATAGG  600

seq1  GGCACAGTACTACCTGGAGAGAAACTTTTAACCAAGGAAGCAGAATAAAA  650
      || |||||||||||||||||||| |||| |||||| | |||| | ||| |
seq2  GGGACAGTACTACCTGGAGAGAATCTTTCAACCAAAGTAGCATAGTAATA  650

seq1  TGAGAGGAAACAGAGAAGATTTAAACCAGTCAGGGGCTGTTCATGACGCC  700
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAAACAGAGAAGATTTAAACCAGTCAGGGGCTGTTCATGACGCC  700

seq1  TGCCAGTCAAGCTCTCCCTCCCTAGCTCTCCAGTAGGTGCC-TTCCTAGG  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCCAGTCAAGCTCTCCCTCCCTAGCTCTCCAGTAGGTGCCTTTCCTAGG  750

seq1  CAGAGAGTTTCCAGTTTTTACAATGCACATGAGATTTATTTTCCAGTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTTTCCAGTTTTTACAATGCACATGAGATTTATTTTCCAGTCAC  800

seq1  CACTATGCACCCCCACAACCAAATAGCCACGAGAAATAAAAAATAATTAT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACTATGCACCCCCACAACCAAATAGCCACGAG-AATAAAAAATAATTAT  849

seq1  ATCCATTTGCACTGC-TTTCATTTAATCTATATGCAAAGGATTTGCTTCC  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCCATTTGCACTGCTTTTCATTTAATCTATATGCAAAGGATTTGCTTCC  899

seq1  ATAACTATT-GACATTTACATAGTATAAAAGTCTAAATTACAAAAGAATT  947
      || |||||| |||||||||||||||||||||||| |||||| ||||| ||
seq2  AT-ACTATTGGACATTTACATAGTATAAAAGTCT-AATTAC-AAAGAGTT  946

seq1  TCCCAACTGCATA-TCATT-GGAAGTCAGTTGTATTATAAAGAAAATTTT  995
      ||||||||||||| ||||| |||||||||||||| |||||||| ||||| 
seq2  TCCCAACTGCATATTCATTGGGAAGTCAGTTGTA-TATAAAGATAATTTA  995

seq1  ACGGAATAAAGTTAAGAGAGCTGATCAATAGTTTATAATGTTTTGAAAAG  1045
        ||||||||| |||||||||||||| |||| |||| ||| || || |||
seq2  CGGGAATAAAGGTAAGAGAGCTGATC-ATAG-TTAT-ATGCTTGGATAAG  1042

seq1  CAAGAATCCAAGATA-ACACAATTAACGATTGCTTAGA  1082
      ||||||||||||||| ||||| | | |||| |||||||
seq2  CAAGAATCCAAGATAGACACATTAATCGATGGCTTAGA  1080