BAC Information

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BAC

Clone NameB6Ng01-165J08
Chromosome1 (Build37)
Map Location 28,609,490 - 28,761,930
singlet/doubletdoublet
Overlap geneEG665903
Upstream geneLOC100040952, EG433281
Downstream geneGm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165J08.bB6Ng01-165J08.g
ACCDH957604DH957605
length657933
definitionDH957604|Mus musculus domesticus DNA, BAC clone: B6Ng01-165J08, 5' end.DH957605|Mus musculus domesticus DNA, BAC clone: B6Ng01-165J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,609,490 - 28,610,146)(28,760,997 - 28,761,930)
sequence
gaattcagttgctcttcatgctgaaaagaacttcccatgctcacagtcag
ctattggatgggtcacagggcccctaatgaaagaactagagaaagtaccc
aaagagctgaagaggtctgcaatgctataggacgaacaacactattttta
aaaattcattattttttattaaatattttctttatttacattttaaatgc
tatccctaatgttccctataatcaccacccccccccagccgccctgctcc
cctacccaccaactcccacttcttggccctggctttcccctgtactgggg
catataaattttgcaatacaaaggggcctctcttcccaatgaaggctgac
taggccattttctgctacatatgcagctagagatataatctctgggggta
ctgattagttcatattgttgtttcacctatatggttgcagaccccttcag
ctccttgggtgctttctctagcttctccattgggggccctgtgttccatc
ctatagatgactgtgagcatccacttctgtatttgccagactggcatagc
ctcatatgaaacagctatatcagggtccattcatcaaaatcttgctggca
tatgcaatagtgtctgtgtttggtggctgattatgggatggatccccagg
tttggta
gaattcatagaattaccatgttcataagtgagatataaatgtggatagct
ggtggctacatccacaaacattaatttgcgaatcaattatcttttccatt
agcattgattgcctatatgattttcagatatgacttatttactgagcatg
atttgttacttgcttttgggaaattggcctgaacttaaaatatggtttta
tttttattttatgagtgtatgtgctcgcgcacacaagcctgtgcatgtat
gtgtggttgtgtttgtgccttcagaggacaatagaggttttttttccccg
ttggtttcaagggcatgggcattgctccactggctattaaaagatacaat
ttcagattgagagaaataataaaagcctacaccaaataatcaaaattgct
gagatttcagtggagaagggaaaatgttttgctaatgaactctgaatgtg
taatgaggtttctttcttttgtttttttcccccttattttgtgtatatat
taactctaaaagcaaattacataatatcaattccccaatttcatttatat
ctatgtactcctctcagacatagatgttttcctcattcctgaggtctcaa
ttatagcctacattgaaccagtgaaaggaagtcttttaaaaccattattt
aaaaagaattttaatgtgttattttatttattggcatttcatatgttatc
ccacttcccagtttcccctccacaaactctctatcccttctcccatgcct
ctatgaggggtactcccccacccacccacccactcctgcttcagtgccct
agcactccccttacctaccctgggtcatctacgctccacaagaccaaggg
acttgtctccctatgattcccaataaggcatcctctgctgcatatacagt
tggagcaataggtgccccatgtgtagttttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28609490_28610146
seq2: B6Ng01-165J08.b_41_697

seq1  GAATTCAGTTGCTCTTCATGCTGAAAAGAACTTCCCATGCTCACAGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGCTCTTCATGCTGAAAAGAACTTCCCATGCTCACAGTCAG  50

seq1  CTATTGGATGGGTCACAGGGCCCCTAATGAAAGAGCTAGAGAAAGTACCC  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTATTGGATGGGTCACAGGGCCCCTAATGAAAGAACTAGAGAAAGTACCC  100

seq1  AAAGAGCTGAAGAGGTCTGCAATGCTATAGGACGAACAACACTATTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTGAAGAGGTCTGCAATGCTATAGGACGAACAACACTATTTTTA  150

seq1  AAAATTCATTATTTTTTATTAAATATTTTCTTTATTTACATTTTAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCATTATTTTTTATTAAATATTTTCTTTATTTACATTTTAAATGC  200

seq1  TATCCCTAATGTTCCCTATAATCACCACCCCCCCCCAGCCGCCCTGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTAATGTTCCCTATAATCACCACCCCCCCCCAGCCGCCCTGCTCC  250

seq1  CCTACCCACCAACTCCCACTTCTTGGCCCTGGCTTTCCCCTGTACTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCACCAACTCCCACTTCTTGGCCCTGGCTTTCCCCTGTACTGGGG  300

seq1  CATATAAATTTTGCAATACAAAGGGGCCTCTCTTCCCAATGAAGGCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAATTTTGCAATACAAAGGGGCCTCTCTTCCCAATGAAGGCTGAC  350

seq1  TAGGCCATTTTCTGCTACATATGCAGCTAGAGATATAATCTCTGGGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCATTTTCTGCTACATATGCAGCTAGAGATATAATCTCTGGGGGTA  400

seq1  CTGATTAGTTCATATTGTTGTTTCACCTATATGGTTGCAGACCCCTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAGTTCATATTGTTGTTTCACCTATATGGTTGCAGACCCCTTCAG  450

seq1  CTCCTTGGGTGCTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGGTGCTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATC  500

seq1  CTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGACTGGCATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGACTGGCATAGC  550

seq1  CTCATATGAGACAGCTATATCAGGGTCCATTCATCAAAATCTTGCTGGCA  600
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATGAAACAGCTATATCAGGGTCCATTCATCAAAATCTTGCTGGCA  600

seq1  TATGCAATAGTGTCTGTGTTTGGTGGCTGATTATGGGATGGATCCCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATAGTGTCTGTGTTTGGTGGCTGATTATGGGATGGATCCCCAGG  650

seq1  TTTGGTA  657
      |||||||
seq2  TTTGGTA  657

seq1: chr1_28760997_28761930
seq2: B6Ng01-165J08.g_68_1000 (reverse)

seq1  ACCAAAGAGTACACATGGGGGCACCTATGGCTCCAACTGAATATGTAGCA  50
      |||||| | ||||||| ||||||||||| |||||||||| ||||| ||||
seq2  ACCAAA-ACTACACAT-GGGGCACCTATTGCTCCAACTGTATATGCAGCA  48

seq1  GAGGATTGCCTTATTGGGCATCACTGGGAGACAAGTCCCTTGGTCTTGTG  100
      ||||| |||||||||||| ||||  |||||||||||||||||||||||||
seq2  GAGGA-TGCCTTATTGGGAATCATAGGGAGACAAGTCCCTTGGTCTTGTG  97

seq1  GAGGGTAGATGACCCAGGGTAGGT-AGGGGAGTGCTAGGGCACTGAAGCA  149
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGCGTAGATGACCCAGGGTAGGTAAGGGGAGTGCTAGGGCACTGAAGCA  147

seq1  GGAGTGGGTGGGTGGGTGGGGGAGTA-CCCTCATAGAGGCATGGGAGAAG  198
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAGTGGGTGGGTGGGTGGGGGAGTACCCCTCATAGAGGCATGGGAGAAG  197

seq1  GGATAGAGAGTTTGTGGAGGGGAAACTGGGAAGTGGGATAACATATGAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAGAGTTTGTGGAGGGGAAACTGGGAAGTGGGATAACATATGAAA  247

seq1  TGCCAATAAATAAAATAACACATTAAAATTCTTTTTAAATAATGGTTTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATAAATAAAATAACACATTAAAATTCTTTTTAAATAATGGTTTTA  297

seq1  AAAGACTTCCTTTCACTGGTTCAATGTAGGCTATAATTGAGACCTCAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTCCTTTCACTGGTTCAATGTAGGCTATAATTGAGACCTCAGGA  347

seq1  ATGAGGAAAACATCTATGTCTGAGAGGAGTACATAGATATAAATGAAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAAACATCTATGTCTGAGAGGAGTACATAGATATAAATGAAATT  397

seq1  GGGGAATTGATATTATGTAATTTGCTTTTAGAGTTAATATATACACAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATTGATATTATGTAATTTGCTTTTAGAGTTAATATATACACAAAA  447

seq1  TAAGGGGGAAAAAAACAAAAGAAAGAAACCTCATTACACATTCAGAGTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGGAAAAAAACAAAAGAAAGAAACCTCATTACACATTCAGAGTTC  497

seq1  ATTAGCAAAACATTTTCCCTTCTCCACTGAAATCTCAGCAATTTTGATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAAAACATTTTCCCTTCTCCACTGAAATCTCAGCAATTTTGATTA  547

seq1  TTTGGTGTAGGCTTTTATTATTTCTCTCAATCTGAAATTGTATCTTTTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTAGGCTTTTATTATTTCTCTCAATCTGAAATTGTATCTTTTAA  597

seq1  TAGCCAGTGGAGCAATGCCCATGCCCTTGAAACCAACGGGGAAAAAAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTGGAGCAATGCCCATGCCCTTGAAACCAACGGGGAAAAAAAAC  647

seq1  CTCTATTGTCCTCTGAAGGCACAAACACAACCACACATACATGCACAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTGTCCTCTGAAGGCACAAACACAACCACACATACATGCACAGGC  697

seq1  TTGTGTGCGCGAGCACATACACTCATAAAATAAAAATAAAACCATATTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCGCGAGCACATACACTCATAAAATAAAAATAAAACCATATTTT  747

seq1  AAGTTCAGGCCAATTTCCCAAAAGCAAGTAACAAATCATGCTCAGTAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGGCCAATTTCCCAAAAGCAAGTAACAAATCATGCTCAGTAAAT  797

seq1  AAGTCATATCTGAAAATCATATAGGCAATCAATGCTAATGGAAAAGATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATATCTGAAAATCATATAGGCAATCAATGCTAATGGAAAAGATAA  847

seq1  TTGATTCGCAAATTAATGTTTGTGGATGTAGCCACCAGCTATCCACATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCGCAAATTAATGTTTGTGGATGTAGCCACCAGCTATCCACATTT  897

seq1  ATATCTCACTTATGAACATGGTAATTCTATGAATTC  934
      ||||||||||||||||||||||||||||||||||||
seq2  ATATCTCACTTATGAACATGGTAATTCTATGAATTC  933