BAC Information

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BAC

Clone NameB6Ng01-166A20
Chromosome1 (Build37)
Map Location 66,840,162 - 66,960,855
singlet/doubletdoublet
Overlap gene1110028C15Rik, Acadl
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe
Downstream geneMyl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166A20.bB6Ng01-166A20.g
ACCDH957939DH957940
length1,0041,137
definitionDH957939|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A20, 5' end.DH957940|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,840,162 - 66,841,021)(66,959,709 - 66,960,855)
sequence
gaattcttttctatgccaatctttctttacacttaggacttcattctttt
ctattttccttactcgtaacactatttcacatagttcttattatgtaggt
tttcctatacacttccttattaataacagcttttgctacattgtgttttg
ataatgttgttttccacttgaacttctcttgagattattttatactttct
ctttattcattgatccattggcttttctgaaaaactctttaatttctatt
tgttaattttcccaaactttttactcatttttagtttcatttttaaatgt
aaaagtttcctgatgcaaatttgttgtttggttggtttttattattcttt
tgtactacaaaagtgtgacttcgggcatatgcatgccatgtacagaagtg
gagacccaagacaatgtgcagaaggcaggaatctgttctcttcctcactg
tgagttcgagagactgaactcatgtgaggcttgcatggcaagcactctta
cccagtaaagccatctcactggccctacagatataatttcaatctttaat
ttgttaagatttattctgtgtcctacctataatgtgttctaacaaatgtt
atatgagtacctcaaaataatctatattctactgctattggatagatgcc
ctatatgttaggcccatttgatccaaagagtagcccaagtccagtgttgg
gttttagatagcctattgagtggtttacctattgctgaatgtgacttacg
aaaacctatttgttactgagttagtatgtcttgtcagatatattcaaatc
tgtttcataagcacaggtatggaagtgcacaccagcaatcccagcactta
ggagataaatgcagggggatactgaatatgatgtcagctgtacactaagt
tccacaccagcttgggctacatagggagctccagtctcattttttctcct
tctaaattacttacacaatgttgggtatatgtatatttataatcttagat
ctct
gaattcagcttcctttcctataaaaacagagataatatggccctttcaac
aatggctttgtgcatgggctgagtaagcctgctttgactttatctagcga
agtcttagctgctagctggatgatcaatgataatttaatattcttttgtc
tctattcttttgttcagccattgtgtgtgcatcgcgtgtgggcatgtatg
tgtcattctggagagaatcatttcacagtcatcatcttgtgctagtgggt
gtctagaaagcgatgagaacagtctgccctagttgttctctggtaactcc
ccatggctttcacatgtgaaggaaacttgaagaatgaacagagggcattc
agctgccctgtccctcctctccccatatccctacccgctctctccctcct
cattctctgcctccttttctctatgtatgcaatgactcaagcctttgaag
taaaggacagagtgagattaatatgtttcaaaaagtagtacaaaagttca
cttcctccgaggaaagaaacccaattgtgtttaattactgacactcttct
cactttccaagctctgattatataaaccaaatgtgtttggtggttctcat
ataattgtgttattttaaagcaggatggctgttaaataatttataactgg
agaccctctctgacaggaagatttttctagtttgatgcattttcctggaa
gtgagagaaagaccaataagtgaaggacttaaattctagcgtctgatctt
cccatccctttagccatactggacatgtgctatgtaatgagataacagaa
tatttaatacatttagtagagctatgaggggtagagcattatacacactt
taaagaaacactttaacatgatgtgtatataatacagaatctaactccaa
agtcatcaaatcgcttttctaggatggtaggtataatttactttcgggtt
tattattgtttggttatttgcttattttgtgtaatactgaaacagaggta
tgagattagttcaccatgatagacactgggacagggggtgcaagcgaaag
aaaaagagagagaaacgaagaatagccaaaggactgcaagggcatccatc
tgcaggggggttggacgtcattgtctatatgcatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66840162_66841021
seq2: B6Ng01-166A20.b_43_902

seq1  GAATTCTTTTCTATGCCAATCTTTCTTTACACTTAGGACTTCATTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTATGCCAATCTTTCTTTACACTTAGGACTTCATTCTTTT  50

seq1  CTATTTTCCTTACTCGTAACACTATTTCACATAGTTCTTATTATGTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCCTTACTCGTAACACTATTTCACATAGTTCTTATTATGTAGGT  100

seq1  TTTCCTATACACTTCCTTATTAATAACAGCTTTTGCTACATTGTGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATACACTTCCTTATTAATAACAGCTTTTGCTACATTGTGTTTTG  150

seq1  ATAATGTTGTTTTCCACTTGAACTTCTCTTGAGATTATTTTATACTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTGTTTTCCACTTGAACTTCTCTTGAGATTATTTTATACTTTCT  200

seq1  CTTTATTCATTGATCCATTGGCTTTTCTGAAAAACTCTTTAATTTCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCATTGATCCATTGGCTTTTCTGAAAAACTCTTTAATTTCTATT  250

seq1  TGTTAATTTTCCCAAACTTTTTACTCATTTTTAGTTTCATTTTTAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTTTCCCAAACTTTTTACTCATTTTTAGTTTCATTTTTAAATGT  300

seq1  AAAAGTTTCCTGATGCAAATTTGTTGTTTGGTTGGTTTTTATTATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTCCTGATGCAAATTTGTTGTTTGGTTGGTTTTTATTATTCTTT  350

seq1  TGTACTACAAAAGTGTGACTTCGGGCATATGCATGCCATGTACAGAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTACAAAAGTGTGACTTCGGGCATATGCATGCCATGTACAGAAGTG  400

seq1  GAGACCCAAGACAATGTGCAGAAGGCAGGAATCTGTTCTCTTCCTCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCAAGACAATGTGCAGAAGGCAGGAATCTGTTCTCTTCCTCACTG  450

seq1  TGAGTTCGAGAGACTGAACTCATGTGAGGCTTGCATGGCAAGCACTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCGAGAGACTGAACTCATGTGAGGCTTGCATGGCAAGCACTCTTA  500

seq1  CCCAGTAAAGCCATCTCACTGGCCCTACAGATATAATTTCAATCTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAAAGCCATCTCACTGGCCCTACAGATATAATTTCAATCTTTAAT  550

seq1  TTGTTAAGATTTATTCTGTGTCCTACCTATAATGTGTTCTAACAAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGATTTATTCTGTGTCCTACCTATAATGTGTTCTAACAAATGTT  600

seq1  ATATGAGTACCTCAAAATAATCTATATTCTACTGCTATTGGATAGATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTACCTCAAAATAATCTATATTCTACTGCTATTGGATAGATGCC  650

seq1  CTATATGTTAGGCCCATTTGATCCAAAGAGTAGCCCAAGTCCAGTGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTAGGCCCATTTGATCCAAAGAGTAGCCCAAGTCCAGTGTTGG  700

seq1  GTTTTAGATAGCCTATTGAGTGGTTTACCTATTGCTGAATGTGACTTACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGATAGCCTATTGAGTGGTTTACCTATTGCTGAATGTGACTTACG  750

seq1  AAAACCTATTTGTTACTGAGTTAGTATGTCTTGTCAGATATATTCAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTATTTGTTACTGAGTTAGTATGTCTTGTCAGATATATTCAAATC  800

seq1  TGTTTCATAAGCACAGGTATGGAAGTGCACACCAGCAATCCCAGCACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATAAGCACAGGTATGGAAGTGCACACCAGCAATCCCAGCACTTA  850

seq1  GGAGATAAAT  860
      ||||||||||
seq2  GGAGATAAAT  860

seq1: chr1_66959709_66960855
seq2: B6Ng01-166A20.g_65_1201 (reverse)

seq1  TGCATGCATTATAG-CAATGACGTCAACACCACCTGCAGATGGATGCTCC  49
      |||||||| ||||| |||||||||| |  || ||||||||||||||| ||
seq2  TGCATGCA-TATAGACAATGACGTCCAACCCCCCTGCAGATGGATGC-CC  48

seq1  TTGCAGGTTCCCTTTGCCTA-TCTTCTGTCTCCTCTCTCTTTCTCCTTTC  98
      ||||||    |||||| ||| ||||| || | |||||||||| ||  || 
seq2  TTGCAG---TCCTTTGGCTATTCTTC-GT-TTCTCTCTCTTTTTC--TTT  91

seq1  CGCTTTGCACCCCCTGTCCCCAGTGTCCTATCAT-GTGAACTAATTCTCA  147
      ||| ||||||||||||| |||||||| ||||||| ||||||||| |||||
seq2  CGC-TTGCACCCCCTGT-CCCAGTGT-CTATCATGGTGAACTAA-TCTCA  137

seq1  TACCTCTGTATCAGTATTACACAAAATAAGCAAATAACCAAACAATAATA  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGTTTCAGTATTACACAAAATAAGCAAATAACCAAACAATAATA  187

seq1  AACCCGAAAGTAAATTATACCTACCATCCTAGAAAAGCGATTTGATGACT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGAAAGTAAATTATACCTACCATCCTAGAAAAGCGATTTGATGACT  237

seq1  TTGGAGTTAGATTCTGTATTATATACACATCATGTTAAAGTGTTTCTTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTAGATTCTGTATTATATACACATCATGTTAAAGTGTTTCTTTA  287

seq1  AAGTGTGTATAATGCTCTACCCCTCATAGCTCTACTAAATGTATTAAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTATAATGCTCTACCCCTCATAGCTCTACTAAATGTATTAAATA  337

seq1  TTCTGTTATCTCATTACATAGCACATGTCCAGTATGGCTAAAGGGATGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTATCTCATTACATAGCACATGTCCAGTATGGCTAAAGGGATGGG  387

seq1  AAGATCAGACGCTAGAATTTAAGTCCTTCACTTATTGGTCTTTCTCTCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGACGCTAGAATTTAAGTCCTTCACTTATTGGTCTTTCTCTCAC  437

seq1  TTCCAGGAAAATGCATCAAACTAGAAAAATCTTCCTGTCAGAGAGGGTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAAAATGCATCAAACTAGAAAAATCTTCCTGTCAGAGAGGGTCT  487

seq1  CCAGTTATAAATTATTTAACAGCCATCCTGCTTTAAAATAACACAATTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATAAATTATTTAACAGCCATCCTGCTTTAAAATAACACAATTAT  537

seq1  ATGAGAACCACCAAACACATTTGGTTTATATAATCAGAGCTTGGAAAGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACCACCAAACACATTTGGTTTATATAATCAGAGCTTGGAAAGTG  587

seq1  AGAAGAGTGTCAGTAATTAAACACAATTGGGTTTCTTTCCTCGGAGGAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTGTCAGTAATTAAACACAATTGGGTTTCTTTCCTCGGAGGAAG  637

seq1  TGAACTTTTGTACTACTTTTTGAAACATATTAATCTCACTCTGTCCTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTGTACTACTTTTTGAAACATATTAATCTCACTCTGTCCTTTA  687

seq1  CTTCAAAGGCTTGAGTCATTGCATACATAGAGAAAAGGAGGCAGAGAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGGCTTGAGTCATTGCATACATAGAGAAAAGGAGGCAGAGAATG  737

seq1  AGGAGGGAGAGAGCGGGTAGGGATATGGGGAGAGGAGGGACAGGGCAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGAGAGCGGGTAGGGATATGGGGAGAGGAGGGACAGGGCAGCT  787

seq1  GAATGCCCTCTGTTCATTCTTCAAGTTTCCTTCACATGTGAAAGCCATGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCCTCTGTTCATTCTTCAAGTTTCCTTCACATGTGAAAGCCATGG  837

seq1  GGAGTTACCAGAGAACAACTAGGGCAGACTGTTCTCATCGCTTTCTAGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTACCAGAGAACAACTAGGGCAGACTGTTCTCATCGCTTTCTAGAC  887

seq1  ACCCACTAGCACAAGATGATGACTGTGAAATGATTCTCTCCAGAATGACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTAGCACAAGATGATGACTGTGAAATGATTCTCTCCAGAATGACA  937

seq1  CATACATGCCCACACGCGATGCACACACAATGGCTGAACAAAAGAATAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCCCACACGCGATGCACACACAATGGCTGAACAAAAGAATAGA  987

seq1  GACAAAAGAATATTAAATTATCATTGATCATCCAGCTAGCAGCTAAGACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGAATATTAAATTATCATTGATCATCCAGCTAGCAGCTAAGACT  1037

seq1  TCGCTAGATAAAGTCAAAGCAGGCTTACTCAGCCCATGCACAAAGCCATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAGATAAAGTCAAAGCAGGCTTACTCAGCCCATGCACAAAGCCATT  1087

seq1  GTTGAAAGGGCCATATTATCTCTGTTTTTATAGGAAAGGAAGCTGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGGGCCATATTATCTCTGTTTTTATAGGAAAGGAAGCTGAATTC  1137