BAC Information

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BAC

Clone NameB6Ng01-166A23
Chromosome1 (Build37)3 (Build37)
Map Location 15,019,435 - 15,019,63990,094,274 - 90,095,404
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1
Downstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166A23.bB6Ng01-166A23.g
ACCDH957945DH957946
length1,1411,113
definitionDH957945|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A23, 5' end.DH957946|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,019,435 - 15,019,639)(90,094,274 - 90,095,404)
sequence
gaattcaggggagcttgtggaaacaatgcagtagagttgagagggagagt
ggagcaccagagacagagaaggaggtagtgttacagagacacattgaaaa
gagaacaagctagacacaggtaaagacagaataagcaagagaatgagagg
agcctgaagattagaaaggattgctagagttagtttgaggccaagcagag
caattcagaggctgagagaaaagccaggttaaataaatcagctgggagag
gagtttgagctgagttgaaccagtcagtcagagttcagaaagaactaggc
ctgggtgagcttattcagcagtaagtttcagaggccgaaaacattctagg
cttagattagactgtacagagtctaggagctcccaggactaggcctaggt
tagcagacagaggcagtaagcctcagagacagttactacttgtgaataaa
atctacttttgcatttctcactaactggcacagtgtcttacagaaggaaa
tggctcagtgtgtaaaagtctttgccctataagcatatcacccatgtttg
aactgcaaaacacacagaaaatgctggatacagtggcctaacacaccatc
tcagcaatcctacagtgacatagaaagaggaaacagtagaattggctgga
aactcacaggccagctggcttggcacatacagtgccagcagcagaaacaa
gagagacctggcctcaaagcaaggtcgaagagaactgactctcaaaaagt
catcctctgagatccacacatgtgctgtccaatgtgagcatccccccccc
cacgcacacacacacatacatatactctaaactgtaaataaaaatgttag
cccactctgtcagcacagaccaaataaaaatgctagccagctcttgtttg
tttgtttgtttgttttcgatacagtagccctggctgtcctggaactcact
ctgtagaccaggctagcctcgaactcagaaatccgcctgctctgcctccc
aagtgctgggattaaagatgggcaccccccacgttgttagccagctcttg
acagcatggtcatctttggctagacccagaggtttcacagtcagcctgga
tacaggtgaaagaagaaaaccggaagaaaaaagaaaaaaag
gaattcttactacagatggctctttagacagcagaggaactttgcattga
tgatggacaaagctttagtcaagaagaatttctggccgggcggtggtggc
gcacgtctttaatcccagcactcacatcacagagtacgtgcctggttgag
tgtactgtaggacttctgtaacagtaaaccttagatctacactaggtgct
ttatcctttgttcagtgactcaagagagtcagcaaaagctgaagatgatg
gagttaaaatataaacaagctgaatttggagctaaaatcgtgaaatcatt
ggaacattaggaaaattcttatagttcttgagtgtatatatcaaatgcta
tatttttataaaagtgtattttgtgtgtatagatgttttgcctgcatgtg
tgtctgtttaccacttgtgtgcctggtgcctgtggaggaggccagaagag
ggcatcaaatccctggattacagaagccaccccatgggtgctacttggtc
ttctagaaggacaagcaatgtttttttttgttttttgtttttaactgctg
agccattgtttctccaatcctgaatactatattcttgttcttggcatggc
ccagaatattaaaggtatgttattttataatccaaacaataagcctatga
gttatattcagcactctccttgtacagttgggtgaacaagagaatagatt
aaaaaaaaaaaaggaatctgtacttgtacaacaatcatagaactggttag
gttcagagccaagatctaaacctaaatactttaactcaaggttatgttat
ttatttatctggacacaatacttgaatacaaataggttttttgtttgttt
aaccttataatacaaactaattgtatggtccaggtctggtgactcagtat
tgtaatctcaacacttgtgagactgagcagaggatgcacaagttcagacg
ttttttttttttcagacgtttctctgtgtagcctgcctgactggaactca
ctctgtagatcagctgctcgactcagaagattccaccttcctctgcctcc
agtgttgggaataaggcatgccactgcatgtccagcctccactctaaatt
aacttaattatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15019435_15019639
seq2: B6Ng01-166A23.b_981_1188 (reverse)

seq1  CTTTTTTTCTTTTTTCTTCCCAGCTATACTGTGAGTTCTTGAAGGCCATG  50
      ||||||||||||||||||||  | | | ||       | || |  ||| |
seq2  CTTTTTTTCTTTTTTCTTCC--GGTTTTCTTCTTTCACCTGTA-TCCAGG  47

seq1  GTCAGT---TACCATCT-----TTTCCTGCTGTGTCCTT--TGT-ATGAG  89
       | | |    | | |||     |  ||     || || |  ||| | |||
seq2  CTGACTGTGAAACCTCTGGGTCTAGCCAAAGATGACCATGCTGTCAAGAG  97

seq1  AGGGCCTGAAACTTAACATTGGTG--GCACATGCCTTTAATCCCAGCACT  137
        |||    |||  ||| | || |  || |||  ||||||||||||||||
seq2  CTGGC---TAAC--AACGTGGGGGGTGCCCAT--CTTTAATCCCAGCACT  140

seq1  TGGGAGGCAGAGGCAGAAGAATTTCTGAGTTTGTGGCCAGCCTGGTCTAC  187
      ||||||||||| ||||  | ||||||||||| | ||| ||||||||||||
seq2  TGGGAGGCAGA-GCAGGCGGATTTCTGAGTTCGAGGCTAGCCTGGTCTAC  189

seq1  AGAGTGAGTTCCA-GACAG  205
      ||||||||||||| |||||
seq2  AGAGTGAGTTCCAGGACAG  208

seq1: chr3_90094274_90095404
seq2: B6Ng01-166A23.g_69_1181

seq1  GAATTCTTACTACAGATGGCTCTTTAGACAGCAGAGGAACTTTGCATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTACAGATGGCTCTTTAGACAGCAGAGGAACTTTGCATTGA  50

seq1  TGATGGACAAAGCTTTAGTCAAGAAGAATTTCTGGCCGGGCGGTGGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGACAAAGCTTTAGTCAAGAAGAATTTCTGGCCGGGCGGTGGTGGC  100

seq1  GCACGTCTTTAATCCCAGCACTCACATCACAGAGTACGTGCCTGGTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTCTTTAATCCCAGCACTCACATCACAGAGTACGTGCCTGGTTGAG  150

seq1  TGTACTGTAGGACTTCTGTAACAGTAAACCTTAGATCTACACTAGGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTAGGACTTCTGTAACAGTAAACCTTAGATCTACACTAGGTGCT  200

seq1  TTATCCTTTGTTCAGTGACTCAAGAGAGTCAGCAAAAGCTGAAGATGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTTGTTCAGTGACTCAAGAGAGTCAGCAAAAGCTGAAGATGATG  250

seq1  GAGTTAAAATATAAACAAGCTGAATTTGGAGCTAAAATCGTGAAATCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAAATATAAACAAGCTGAATTTGGAGCTAAAATCGTGAAATCATT  300

seq1  GGAACATTAGGAAAATTCTTATAGTTCTTGAGTGTATATATCAAATGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTAGGAAAATTCTTATAGTTCTTGAGTGTATATATCAAATGCTA  350

seq1  TATTTTTATAAAAGTGTATTTTGTGTGTATAGATGTTTTGCCTGCATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATAAAAGTGTATTTTGTGTGTATAGATGTTTTGCCTGCATGTG  400

seq1  TGTCTGTTTACCACTTGTGTGCCTGGTGCCTGTGGAGGAGGCCAGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTACCACTTGTGTGCCTGGTGCCTGTGGAGGAGGCCAGAAGAG  450

seq1  GGCATCAAATCCCTGGATTACAGAAGCCACCCCATGGGTGCTACTTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAAATCCCTGGATTACAGAAGCCACCCCATGGGTGCTACTTGGTC  500

seq1  TTCTAGAAGGACAAGCAATGTTTTTTTTTGTTTTTTGTTTTTAACTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAAGGACAAGCAATGTTTTTTTTTGTTTTTTGTTTTTAACTGCTG  550

seq1  AGCCATTGTTTCTCCAATCCTGAATACTATATTCTTGTTCTTGGCATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGTTTCTCCAATCCTGAATACTATATTCTTGTTCTTGGCATGGC  600

seq1  CCAGAATATTAAAGGTATGTTATTTTATAATCCAAACAATAAGCCTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATATTAAAGGTATGTTATTTTATAATCCAAACAATAAGCCTATGA  650

seq1  GTTATATTCAGCACTCTCCTTGTACAGTTGGGTGAACAAGAGAATAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTCAGCACTCTCCTTGTACAGTTGGGTGAACAAGAGAATAGATT  700

seq1  AAAAAAAAAAAAGGAATCTGTACTTGTACAACAATCATAGAACTGGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGGAATCTGTACTTGTACAACAATCATAGAACTGGTTAG  750

seq1  GTTCAGAGCCAAGATCTAAACCTAAATACTTTAACTCAAGGTTATGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGCCAAGATCTAAACCTAAATACTTTAACTCAAGGTTATGTTAT  800

seq1  TTATTTATCTGGACACAATACTTGAATACAAATAGGTTTTTTGTTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATCTGGACACAATACTTGAATACAAATAGGTTTTTTGTTTGTTT  850

seq1  AACCTTATAATACAAACTAATTGTATGGTCCAGGTCTGGTGACTCAGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTATAATACAAACTAATTGTATGGTCCAGGTCTGGTGACTCAGTAT  900

seq1  TGTAATCTCAACACTTGTGAGACTGAGGCAGGAGGATTGCCACAAGTTCA  950
      |||||||||||||||||||||||||| ||| ||||||   ||||||||| 
seq2  TGTAATCTCAACACTTGTGAGACTGA-GCA-GAGGAT--GCACAAGTTC-  945

seq1  AGACGGTTTTTTTTTTTTTTCAAGACGGTTTCTCTGTGTAGCCCTGGCTG  1000
      |||||   ||||||||||||| |||| |||||||||||||| |||| |||
seq2  AGACG---TTTTTTTTTTTTC-AGAC-GTTTCTCTGTGTAG-CCTGCCTG  989

seq1  ACTTGGAACTCACTCTGTAGATCAGGCTGGCCTCGAACTCAG-AGATT-C  1048
      || ||||||||||||||||||||| ||||  |||| |||||| ||||| |
seq2  AC-TGGAACTCACTCTGTAGATCA-GCTG--CTCG-ACTCAGAAGATTCC  1034

seq1  ACCTTCCTCTGCCTCCCAAGTGTTGGGATTAAAGGCATG-CACTGTCATG  1097
      ||||||||||||||||  |||||||||| | |||||||| ||||| ||||
seq2  ACCTTCCTCTGCCTCC--AGTGTTGGGAAT-AAGGCATGCCACTG-CATG  1080

seq1  TCCAGCTCTCCA-TCATAATTAACTTTATTTATAT  1131
      |||||| ||||| ||  ||||||| ||| ||||||
seq2  TCCAGC-CTCCACTCTAAATTAAC-TTAATTATAT  1113