BAC Information

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BAC

Clone NameB6Ng01-166L23
Chromosome1 (Build37)
Map Location 161,907,071 - 162,101,588
singlet/doubletdoublet
Overlap gene4930523C07Rik, 4930562F07Rik, Tnn
Upstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
Downstream geneMrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166L23.bB6Ng01-166L23.g
ACCDH958436DH958437
length1,0581,136
definitionDH958436|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L23, 5' end.DH958437|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,100,535 - 162,101,588)(161,907,071 - 161,907,924)
sequence
gaattccaggtcagccagggctatacagagaaaccctgtctcgaaaaaca
aaaaacaaaaacaaaaacataacaaaaaatgactgcaccagttgacatgc
caatattgatgggggaattctcacaatgcttcatctctagaagagcagct
ataggacttatggttgttaagataggaagaaccagtcttctctgtggatt
agccaaggttattccagattatcccaaaaggtcatccttaaacacgtatg
agcaacattaagtgatttcagcaggctgtatatgtatatgtacacacaca
taataaaaagataagagatgatgaatttgagaaggaatggaagggacaca
agaagaattagaggaaggtggaaggaaagatacaaatacagtatttagat
agaatcctcaaaaagatgaattaaaccgtttgaattatgcacaaaggcct
ttcccaggcccagaaaagatgggaaacctacaccaccaactcatttacat
caattattttcttttagaatgcaagaactcttaaatgatgttttttctct
tccaggacttaaaacaaacaaacaaacaataaaccaaccaaccaaccaac
caaccaaccaaccaaccaaaaactaagcctgttggacacaacctggtgcc
caggtctaaattcccaccccctactctccatccctaaaaaggaccggtta
gcttattttactgtttacagttaaatttacacatttttctgttttttttt
ttttttactttcaatttttgtcttttctttttctttttatctttttattt
ttttaaaaaaatatttacccagttcccccctcgcagaaacccctatccca
tcccccccctgcttctatgagggtattcctctgtctacccacccactcct
gcctccctgccctcgattcccctacactgggcgtctatcgaaccttcata
ggaccaaggacctctccttccattgatgcctgacaaggccatcctctgct
acataggcagcttggagccacatatactcctttggtagtggttttaatct
ctgggagc
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacactttctag
caggcattgactgcaaatagcctcttggttagctgtggggctttgtgtcc
acctcttctcagtgctggaactttgtgtggtatggacccatgcaggtctt
atgcaggctgccaccatctccatgagtttttatgggcatcagtcctatcg
tagctggaagacagtttccttggaatcatccatcacatccggctccttgt
gaccattctgcctcctcttccacatagatccctgagccttgaagggaaag
gtttggtgaagacatcccatgtaggaatgactgttccaaagtctctcaca
atgtccagggtctctaatgtccattgtctcataatattgtgggtctctgt
gttatttagcatccattgaaaaaagaccattttctgatgaaggctgaata
tgacattgatctataggcatagaaatatgttgttaggagtgacattctat
ggctatgtttctttagcagagtaatagcagtatgttttcccatagggtcc
ataatttctctagtctcaagttcttggacagtttaaccatatcacgtata
gattctatttcatctcatggagtaggttaggataaaaaaccttctaaaca
attttctatttatatcagtcaataacaagtaaacgtaccctcctctccta
acctctaaccaacatgagcacaccacagcctaccctgtttcatctaaaag
ttcttggtatctctgagttagctctggaaacttatgatataattaaaggg
ttagtgagcaggtggatgatctcccacccaaatcatgagagaatttgggt
gataggaattctcctcagaagaagctcctattaattgtctaggtgaagaa
ctgtctgtttagaatcctccacagagcttagctgaatcctggtgctgggc
aagctctaggatcaaagaatcaaggtctcgaagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162100535_162101588
seq2: B6Ng01-166L23.b_48_1105 (reverse)

seq1  GCTCCCAGAGATT-AAACCACTAACCAAGGAGTATATGTGGCTCC-AGCT  48
      ||||||||||||| ||||||||| | ||||||||||||||||||| ||||
seq2  GCTCCCAGAGATTAAAACCACTACCAAAGGAGTATATGTGGCTCCAAGCT  50

seq1  GCCTATGTAGCAGAGGATGGCCTTGTCAGGCATCAATGGAAGGAGAGGTC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGTAGCAGAGGATGGCCTTGTCAGGCATCAATGGAAGGAGAGGTC  100

seq1  CTTGGTCCTATGAAGGTTCGATAGACGCCCAGTGTAGGGGAATCGAGGGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCTATGAAGGTTCGATAGACGCCCAGTGTAGGGGAATCGAGGGC  150

seq1  AGGGAGGCAGGAGTGGGTGGGTAGACAGAGGAATACCCTCATAGAAGCA-  197
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGGAGGCAGGAGTGGGTGGGTAGACAGAGGAATACCCTCATAGAAGCAG  200

seq1  GGGGGGGATGGGATAGGGGTTTCTGCGAGGGGGGAACTGGGTAAATATTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGATGGGATAGGGGTTTCTGCGAGGGGGGAACTGGGTAAATATTT  250

seq1  TTTTAAAAAAATAAAAAGATAAAAAGAAAAAGAAAAGACAAAAATTGAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAATAAAAAGATAAAAAGAAAAAGAAAAGACAAAAATTGAAA  300

seq1  GT-AAAAAAAAAAAAAACAGAAAAATGTGTAAATTTAACTGTAAACAGTA  346
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAAAAAAAAACAGAAAAATGTGTAAATTTAACTGTAAACAGTA  350

seq1  AAATAAGCTAACCGGTCCTTTTTAGGGATGGAGAGTAGGGGGTGGGAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCTAACCGGTCCTTTTTAGGGATGGAGAGTAGGGGGTGGGAATT  400

seq1  TAGACCTGGGCACCAGGTTGTGTCCAACAGGCTTAGTTTTTGGTTGGTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTGGGCACCAGGTTGTGTCCAACAGGCTTAGTTTTTGGTTGGTTG  450

seq1  GTTGGTTGGTTGGTTGGTTGGTTGGTTTATTGTTTGTTTGTTTGTTTTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGGTTGGTTGGTTGGTTGGTTTATTGTTTGTTTGTTTGTTTTAA  500

seq1  GTCCTGGAAGAGAAAAAACATCATTTAAGAGTTCTTGCATTCTAAAAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAAGAGAAAAAACATCATTTAAGAGTTCTTGCATTCTAAAAGAA  550

seq1  AATAATTGATGTAAATGAGTTGGTGGTGTAGGTTTCCCATCTTTTCTGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGATGTAAATGAGTTGGTGGTGTAGGTTTCCCATCTTTTCTGGG  600

seq1  CCTGGGAAAGGCCTTTGTGCATAATTCAAACGGTTTAATTCATCTTTTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAAGGCCTTTGTGCATAATTCAAACGGTTTAATTCATCTTTTTG  650

seq1  AGGATTCTATCTAAATACTGTATTTGTATCTTTCCTTCCACCTTCCTCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTATCTAAATACTGTATTTGTATCTTTCCTTCCACCTTCCTCTA  700

seq1  ATTCTTCTTGTGTCCCTTCCATTCCTTCTCAAATTCATCATCTCTTATCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTGTGTCCCTTCCATTCCTTCTCAAATTCATCATCTCTTATCT  750

seq1  TTTTATTATGTGTGTGTACATATACATATACAGCCTGCTGAAATCACTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATGTGTGTGTACATATACATATACAGCCTGCTGAAATCACTTA  800

seq1  ATGTTGCTCATACGTGTTTAAGGATGACCTTTTGGGATAATCTGGAATAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTCATACGTGTTTAAGGATGACCTTTTGGGATAATCTGGAATAA  850

seq1  CCTTGGCTAATCCACAGAGAAGACTGGTTCTTCCTATCTTAACAACCATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTAATCCACAGAGAAGACTGGTTCTTCCTATCTTAACAACCATA  900

seq1  AGTCCTATAGCTGCTCTTCTAGAGATGAAGCATTGTGAGAATTCCCCCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTATAGCTGCTCTTCTAGAGATGAAGCATTGTGAGAATTCCCCCAT  950

seq1  CAATATTGGCATGTCAACTGGTGCAGTCATTTTTTGTTATGTTTTTGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTGGCATGTCAACTGGTGCAGTCATTTTTTGTTATGTTTTTGTTT  1000

seq1  TTGTTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGACC  1050

seq1  TGGAATTC  1054
      ||||||||
seq2  TGGAATTC  1058

seq1: chr1_161907071_161907924
seq2: B6Ng01-166L23.g_347_1202

seq1  TATGGACCCATGCAGGTCTTATGCAGGCTGCCACCATCTCCATGAGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACCCATGCAGGTCTTATGCAGGCTGCCACCATCTCCATGAGTTTT  50

seq1  TATGGGCATCAGTCCTATCGTAGCTGGAAGACAGTTTCCTTGGAATCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCATCAGTCCTATCGTAGCTGGAAGACAGTTTCCTTGGAATCATC  100

seq1  CATCACATCCGGCTCCTTGTGACCATTCTGCCTCCTCTTCCACATAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATCCGGCTCCTTGTGACCATTCTGCCTCCTCTTCCACATAGATC  150

seq1  CCTGAGCCTTGAAGGGAAAGGTTTGGTGAAGACATCCCATGTAGGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCCTTGAAGGGAAAGGTTTGGTGAAGACATCCCATGTAGGAATGA  200

seq1  CTGTTCCAAAGTCTCTCACAATGTCCAGGGTCTCTAATGTCCATTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCAAAGTCTCTCACAATGTCCAGGGTCTCTAATGTCCATTGTCTC  250

seq1  ATAATATTGTGGGTCTCTGTGTTATTTAGCATCCATTGAAAAAAGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTGTGGGTCTCTGTGTTATTTAGCATCCATTGAAAAAAGACCAT  300

seq1  TTTCTGATGAAGGCTGAATATGACATTGATCTATAGGCATAGAAATATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATGAAGGCTGAATATGACATTGATCTATAGGCATAGAAATATGT  350

seq1  TGTTAGGAGTGACATTCTATGGCTATGTTTCTTTAGCAGAGTAATAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGAGTGACATTCTATGGCTATGTTTCTTTAGCAGAGTAATAGCAG  400

seq1  TATGTTTTCCCATAGGGTCCATAATTTCTCTAGTCTCAAGTTCTTGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTCCCATAGGGTCCATAATTTCTCTAGTCTCAAGTTCTTGGACA  450

seq1  GTTTAACCATATCAGGTATAGATTCTATTTCATCTCATGGAGTAGGTTAG  500
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTTAACCATATCACGTATAGATTCTATTTCATCTCATGGAGTAGGTTAG  500

seq1  GATAAAAAACCTTCTAAACAATTTTCTATTTATATCAGTCAATAACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAAACCTTCTAAACAATTTTCTATTTATATCAGTCAATAACAAGT  550

seq1  AAACGTACCCTCCTCTCCTAACCTCTAACCAACATGAGCACACCACAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTACCCTCCTCTCCTAACCTCTAACCAACATGAGCACACCACAGCC  600

seq1  TACCCTGTTTCATCTAAAAGTTCTTGGTATTCTCTGAGTTAGCTCTGGAA  650
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TACCCTGTTTCATCTAAAAGTTCTTGGTA-TCTCTGAGTTAGCTCTGGAA  649

seq1  ACTTATGATATAATTAAAGGGTTAGTGAGCAGGTGGATGATCTCCCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGATATAATTAAAGGGTTAGTGAGCAGGTGGATGATCTCCCACCC  699

seq1  AAATCATGAGAGGATTTGGGTGATAGGAATTCTCCTCAGAAG-AGCTCAT  749
      |||||||||||| ||||||||||||||||||||||||||||| ||||| |
seq2  AAATCATGAGAGAATTTGGGTGATAGGAATTCTCCTCAGAAGAAGCTCCT  749

seq1  A-TAATTGTCTA-GTGAAGTACTGTCATGTTTAGAATCATCAACAGAGCT  797
      | |||||||||| |||||| |||||| ||||||||||| || ||||||||
seq2  ATTAATTGTCTAGGTGAAGAACTGTC-TGTTTAGAATCCTCCACAGAGCT  798

seq1  AAGCTG-ATCTTGGTGCTGGCAAAAGCCTAGGATTCAGAGAATCAAAGGT  846
       ||||| ||| |||||||||  ||   |||||| ||| |||||| |||||
seq2  TAGCTGAATCCTGGTGCTGGGCAAGCTCTAGGA-TCAAAGAATC-AAGGT  846

seq1  CTC--AGAGG  854
      |||  |||||
seq2  CTCGAAGAGG  856