BAC Information

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BAC

Clone NameB6Ng01-166M16
Chromosome1 (Build37)
Map Location 66,839,272 - 66,984,263
singlet/doubletdoublet
Overlap gene1110028C15Rik, Acadl, Myl1
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe
Downstream geneLOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166M16.bB6Ng01-166M16.g
ACCDH958469DH958470
length1,1101,150
definitionDH958469|Mus musculus domesticus DNA, BAC clone: B6Ng01-166M16, 5' end.DH958470|Mus musculus domesticus DNA, BAC clone: B6Ng01-166M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,839,272 - 66,840,394)(66,983,093 - 66,984,263)
sequence
gaattccagagctgcctggaaggaagcagattaaatgtccaggtctactt
aaaattccttgaagcctactagcaatgttgtgacctttaagaggtatcac
tgggaagtctggaagtgactagttctgttccatcctaggtttgatgtcct
tacaaaagaggctgtggacttgttgactcccaggaccatgtgagaaacta
gatagaagataatgtcaagtttgaagacatttccaagaattgaatctgca
agttcgccctgaaaacgccctaccttccagaactacaaatcatgtttcta
tgattcataatttcctggtctgttttcttgaaccagtctgaacaataagt
atccttgtcttgtttcttatcttaaaaggaaggctttcaagtttgctatt
actaagagattatctgggaatcttttaaggtacattccttttataactgt
tggtaatttcaacaacaaaaaaaaggatattgattttttccttgtattga
tgatcatgtaaagaacaggttagacttcaccacagagatccacctgcctt
gcctctcaagtgctcagattaaaggtgtactccaccatcacctggttggt
tcttgctttttgataagatatttgttgtcatctccttgctcaacattggc
aggtttaatttttaactattttattatcttggtattgtgtgtatatatta
tatttttctaggttatcaagtttgttggagtacaaatattcctaatagaa
cactataatctatatttgtttggccacttctattttcttacttccgataa
gtctatgattcttagtctaattgaagatttgtttatcttggcaaaaattt
ggtctcattgatattttcagtagctttcttgttctctactgaattctttt
ctatgccaatctttctttacacttaggacttcattcttttctattttcct
tactcgtaacactatttcacatagttcttattatgtaggtttcctataca
cttccttatatacagcttttgctacattgtgtttgatatgtgattcactt
gacttctcttgagattattttatactttctctttattcatgatcattggc
ctttcgaaaa
gaattctttggataagagggtttctgataaaggctgagaagaatgtctaa
tgtgacaagaggagagaagagtggttgcatgccaggcagaaaagatttga
gacacaccaaatgatgatctctaaccaaggccctaaccaaatggctgtgt
aatcagatcacacgtttgctcaaagagctgacgatattcctatttaacaa
ggaggagaagcaagacaggggtttgccattctaacagtggatgggaggtg
agttgttttctctcatttatttttgagcacataacatagatctaacattt
aaagtttaatttcctctctggattagctatagtttactatttcttgtgtc
aactggtatgtttacacttatattttgattttcagtaggtaaagaaaaag
ctaagcttttattgttgatatgttaaagatttagagaaatactaggatga
agtagtttaacagtttcttagcactttatggctcctattttaatagtaac
aacaaaccttaatgtgatatctaagtggttaaaaatagcttattcacaaa
taaattggagtttggtgctgactttgtagttttttcacaagtttttatac
aaatttatcatgtttcctatgtatacaaggccaccacatctttccatctg
aaaaaaaaagatgcaatatgaagattatcattatgtacaatgaggcaact
caatggagtatttacagttaccagcttcactaaagatatatgctagctct
caataatgattaggcaattcagatttagggctacaaatacatagatacaa
tttcatcaaatctaatggcacaaataccaattacaaaatttcactgtaat
gactcaaagcatttctaatctttctgttaacattccccaataacctttca
aatatcatatttccaatcatgttaaaacatgaagacacatttacataggt
gctactactttaaaaaattattatttgtcatttagagatcagtcctagag
atatttttcacaattttaactttgagtcaaatgataatactttatattgt
gatagcacttattatcacaccaaatagcgctagtattgtgagtttctaat
gtccacggtaattatgtttttgaaagagtggtgctcttagctttcatttc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66839272_66840394
seq2: B6Ng01-166M16.b_47_1156

seq1  GAATTCCAGAGCTGCCTGGAAGGAAGCAGATTAAATGTCCAGGTCTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCTGCCTGGAAGGAAGCAGATTAAATGTCCAGGTCTACTT  50

seq1  AAAATTCCTTGAAGCCTACTAGCAATGTTGTGACCTTTAAGAGGTATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCTTGAAGCCTACTAGCAATGTTGTGACCTTTAAGAGGTATCAC  100

seq1  TGGGAAGTCTGGAAGTGACTAGTTCTGTTCCATCCTAGGTTTGATGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTCTGGAAGTGACTAGTTCTGTTCCATCCTAGGTTTGATGTCCT  150

seq1  TACAAAAGAGGCTGTGGACTTGTTGACTCCCAGGACCATGTGAGAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGAGGCTGTGGACTTGTTGACTCCCAGGACCATGTGAGAAACTA  200

seq1  GATAGAAGATAATGTCAAGTTTGAAGACATTTCCAAGAATTGAATCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGATAATGTCAAGTTTGAAGACATTTCCAAGAATTGAATCTGCA  250

seq1  AGTTCGCCCTGAAAACGCCCTACCTTCCAGAACTACAAATCATGTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGCCCTGAAAACGCCCTACCTTCCAGAACTACAAATCATGTTTCTA  300

seq1  TGATTCATAATTTCCTGGTCTGTTTTCTTGAACCAGTCTGAACAATAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATAATTTCCTGGTCTGTTTTCTTGAACCAGTCTGAACAATAAGT  350

seq1  ATCCTTGTCTTGTTTCTTATCTTAAAAGGAAGGCTTTCAAGTTTGCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTCTTGTTTCTTATCTTAAAAGGAAGGCTTTCAAGTTTGCTATT  400

seq1  ACTAAGAGATTATCTGGGAATCTTTTAAGGTACATTCCTTTTATAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGATTATCTGGGAATCTTTTAAGGTACATTCCTTTTATAACTGT  450

seq1  TGGTAATTTCAACAACAAAAAAAAGGATATTGATTTTTTCCTTGTATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTTCAACAACAAAAAAAAGGATATTGATTTTTTCCTTGTATTGA  500

seq1  TGATCATGTAAAGAACAGGTTAGACTTCACCACAGAGATCCACCTGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGTAAAGAACAGGTTAGACTTCACCACAGAGATCCACCTGCCTT  550

seq1  GCCTCTCAAGTGCTCAGATTAAAGGTGTACTCCACCATCACCTGGTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCAAGTGCTCAGATTAAAGGTGTACTCCACCATCACCTGGTTGGT  600

seq1  TCTTGCTTTTTGATAAGATATTTGTTGTCATCTCCTTGCTCAACATTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTTTGATAAGATATTTGTTGTCATCTCCTTGCTCAACATTGGC  650

seq1  AGGTTTAATTTTTAACTATTTTATTATCTTGGTATTGTGTGTATATATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAATTTTTAACTATTTTATTATCTTGGTATTGTGTGTATATATTA  700

seq1  TATTTTTCTAGGTTATCAAGTTTGTTGGAGTACAAATATTCCTAATAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTAGGTTATCAAGTTTGTTGGAGTACAAATATTCCTAATAGAA  750

seq1  CACTATAATCTATATTTGTTTGGCCACTTCTATTTTCTTACTTCCGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAATCTATATTTGTTTGGCCACTTCTATTTTCTTACTTCCGATAA  800

seq1  GTCTATGATTCTTAGTCTAATTGAAGATTTGTTTATCTTGGCAAAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGATTCTTAGTCTAATTGAAGATTTGTTTATCTTGGCAAAAATTT  850

seq1  GGTCTCATTGATATTTTCAGTAGCTTTCTTGTTCTCTACTGAATTCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCATTGATATTTTCAGTAGCTTTCTTGTTCTCTACTGAATTCTTTT  900

seq1  CTATGCCAATCTTTCTTTACACTTAGGACTTCATTCTTTTCTATTTTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCAATCTTTCTTTACACTTAGGACTTCATTCTTTTCTATTTTCCT  950

seq1  TACTCGTAACACTATTTCACATAGTTCTTATTATGTAGGTTTTCCTATAC  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACTCGTAACACTATTTCACATAGTTCTTATTATGTAGG-TTTCCTATAC  999

seq1  ACTTCCTTATTAATAACAGCTTTTGCTACATTGTGTTTTGATAATGTTGT  1050
      ||||||||||  || |||||||||||||||||||| |||||||    |||
seq2  ACTTCCTTAT--AT-ACAGCTTTTGCTACATTGTG-TTTGATA----TGT  1041

seq1  TTTCCACTTGAACTTCTCTTGAGATTATTTTATACTTTCTCTTTATTCAT  1100
        | |||||| |||||||||||||||||||||||||||||||||||||| 
seq2  GATTCACTTG-ACTTCTCTTGAGATTATTTTATACTTTCTCTTTATTCA-  1089

seq1  TGATCCATTGGCTTTTCTGAAAA  1123
      |||| ||||||| |||| |||||
seq2  TGAT-CATTGGCCTTTC-GAAAA  1110

seq1: chr1_66983093_66984263
seq2: B6Ng01-166M16.g_71_1220 (reverse)

seq1  GAAATGAACAGCTAAGTATGCACCACCTCTTCAAAATACATAATTA-CGT  49
      |||||||| |||||||   |||||| |||||  ||| ||||||||| |||
seq2  GAAATGAA-AGCTAAG--AGCACCA-CTCTTTCAAAAACATAATTACCGT  46

seq1  GGACATATGAAAACATCACAATACTAGCCGCTATTTTGTGTGATTATTAG  99
      ||||||  ||||   |||||||||||| |||||||| |||||| || || 
seq2  GGACATTAGAAA--CTCACAATACTAG-CGCTATTTGGTGTGA-TAATAA  92

seq1  GTGCTAATCACAATATTAAAAGTATATATCATTTTGACTCAAAGTTTAAA  149
      ||||| ||||||||||  ||||||| ||||| |||||||||||| |||||
seq2  GTGCT-ATCACAATAT--AAAGTAT-TATCA-TTTGACTCAAAG-TTAAA  136

seq1  ATTGTGAAAAATATCTCCTAGGACCTTGATTCTCTAAATGACAAATAATA  199
      |||||||||||||||| |||||||  ||| ||||||||||||||||||||
seq2  ATTGTGAAAAATATCT-CTAGGAC--TGA-TCTCTAAATGACAAATAATA  182

seq1  ATTTTTTTAAAGGTAGTAGCACCTATGTAAATGTGTCTTCATGTTTTTAA  249
      |||||||  || ||||||||||||||||||||||||||||||| ||||||
seq2  ATTTTTT--AAAGTAGTAGCACCTATGTAAATGTGTCTTCATG-TTTTAA  229

seq1  CATGATTGGAAATATGATATTTTGAAAGGTTATTGGGGAATGTTAACAGA  299
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATGATTGGAAATATGATA-TTTGAAAGGTTATTGGGGAATGTTAACAGA  278

seq1  AAGATTAGAAATGCTTTGAGTCATTACAGTGAAATTTTGTAATTGGTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAGAAATGCTTTGAGTCATTACAGTGAAATTTTGTAATTGGTATT  328

seq1  TGTGCCATTAGATTTGATGAAATTGTATCTATGTATTTGTAGCCCTAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATTAGATTTGATGAAATTGTATCTATGTATTTGTAGCCCTAAAT  378

seq1  CTGAATTGCCTAATCATTATTGAGAGCTAGCATATATCTTTAGTGAAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGCCTAATCATTATTGAGAGCTAGCATATATCTTTAGTGAAGCT  428

seq1  GGTAACTGTAAATACTCCATTGAGTTGCCTCATTGTACATAATGATAATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTGTAAATACTCCATTGAGTTGCCTCATTGTACATAATGATAATC  478

seq1  TTCATATTGCATCTTTTTTTTTCAGATGGAAAGATGTGGTGGCCTTGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTGCATCTTTTTTTTTCAGATGGAAAGATGTGGTGGCCTTGTAT  528

seq1  ACATAGGAAACATGATAAATTTGTATAAAAACTTGTGAAAAAACTACAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGAAACATGATAAATTTGTATAAAAACTTGTGAAAAAACTACAAA  578

seq1  GTCAGCACCAAACTCCAATTTATTTGTGAATAAGCTATTTTTAACCACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCACCAAACTCCAATTTATTTGTGAATAAGCTATTTTTAACCACTT  628

seq1  AGATATCACATTAAGGTTTGTTGTTACTATTAAAATAGGAGCCATAAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCACATTAAGGTTTGTTGTTACTATTAAAATAGGAGCCATAAAGT  678

seq1  GCTAAGAAACTGTTAAACTACTTCATCCTAGTATTTCTCTAAATCTTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAACTGTTAAACTACTTCATCCTAGTATTTCTCTAAATCTTTAA  728

seq1  CATATCAACAATAAAAGCTTAGCTTTTTCTTTACCTACTGAAAATCAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAACAATAAAAGCTTAGCTTTTTCTTTACCTACTGAAAATCAAAA  778

seq1  TATAAGTGTAAACATACCAGTTGACACAAGAAATAGTAAACTATAGCTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTGTAAACATACCAGTTGACACAAGAAATAGTAAACTATAGCTAA  828

seq1  TCCAGAGAGGAAATTAAACTTTAAATGTTAGATCTATGTTATGTGCTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAGGAAATTAAACTTTAAATGTTAGATCTATGTTATGTGCTCAA  878

seq1  AAATAAATGAGAGAAAACAACTCACCTCCCATCCACTGTTAGAATGGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGAGAGAAAACAACTCACCTCCCATCCACTGTTAGAATGGCAA  928

seq1  ACCCCTGTCTTGCTTCTCCTCCTTGTTAAATAGGAATATCGTCAGCTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGTCTTGCTTCTCCTCCTTGTTAAATAGGAATATCGTCAGCTCTT  978

seq1  TGAGCAAACGTGTGATCTGATTACACAGCCATTTGGTTAGGGCCTTGGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAACGTGTGATCTGATTACACAGCCATTTGGTTAGGGCCTTGGTT  1028

seq1  AGAGATCATCATTTGGTGTGTCTCAAATCTTTTCTGCCTGGCATGCAACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCATCATTTGGTGTGTCTCAAATCTTTTCTGCCTGGCATGCAACC  1078

seq1  ACTCTTCTCTCCTCTTGTCACATTAGACATTCTTCTCAGCCTTTATCAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTCTCCTCTTGTCACATTAGACATTCTTCTCAGCCTTTATCAGA  1128

seq1  AACCCTCTTATCCAAAGAATTC  1171
      ||||||||||||||||||||||
seq2  AACCCTCTTATCCAAAGAATTC  1150