BAC Information

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BAC

Clone NameB6Ng01-167A07
Chromosome1 (Build37)14 (Build37)
Map Location 139,812,872 - 139,813,006112,628,721 - 112,629,361
singlet/doubletsingletsinglet
Overlap geneLOC100043143
Upstream geneNr5a2, Rnu7-ps3, LOC100042567
Downstream genePtprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167A07.bB6Ng01-167A07.g
ACCDH958628DH958629
length1,069831
definitionDH958628|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A07, 5' end.DH958629|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(139,812,872 - 139,813,006)(112,628,721 - 112,629,361)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacattcttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaagaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
ggatattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaacgaatttatgaaattcctagccaa
atggatggacctggagggcatcattctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatatgagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgtcactccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggggctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttttgagactatgccggatcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtagccaagagctaaagggatctgcaacccta
tagtgacacatatgactaccagtacccggagctctgtctctagctgcata
tgtatcaaagatggctagt
gaattccagtgctgggaaaggggattaggaaagattataagacatgagga
aattcttctgtcagactgtatgttttagaaataactgccttaacaagatc
tgaacgatgataatgccaacacatatgctaatgcagaagggaaaatttca
tgatatctcatgcctagccaaagaaatacaggcatctaatgaatgttgaa
agaattagctgccctcatggctgagctgtctaagtggtcaatgttgaaag
tatatacatacaaaaaatgactcaggttttatttaactattcatacaaca
cattgaacatgtatgtacacacaggaagtagtcattactttgttgaaaag
aaatgggtggtcatgtgaaggattggagggaggggacagaggaatggtag
gaggaaaaaatgaagaggtgaacgatgcaattgtattttaattatctagg
actattaagggtggtaaggtgattaaggatcaaaaggaaggttactgctt
tgcattaaaaagataggaaaggtaccatcaaggcaaatgtctaacccgtt
tcaacactactttgatagcaaaaagctgaaagggatttctgcttctagaa
agaactcaccagtgattgcttatggaagtcgtggatatgagggctatctg
aagaaggcagttaagtttggcaatgtccgtgcggattggaacatgagaaa
aacaagactggaagtcattttttcttctctcacatgtagcagtcagagat
tttttgtgaggtggcttcaggacaacattgaatgaaactgggtagtaaaa
ctgaatcatttttgaaatccatcgattacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_139812872_139813006
seq2: B6Ng01-167A07.b_997_1117 (reverse)

seq1  ACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACGAGCTCCAGGGG  50
      |||| |||||||| ||||||||||||||||||||||| |||||||   ||
seq2  ACTA-GCCATCTT-TGATACATATGCAGCTAGAGACA-GAGCTCC---GG  44

seq1  GTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCTT  100
      ||||||| ||| |||||    |||  || |||||||||||||||||||||
seq2  GTACTGG-TAG-TCATA----TGTGTCA-CTATAGGGTTGCAGATCCCTT  87

seq1  TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTG  135
      ||||| ||||| |||||||||||||||||||||||
seq2  TAGCT-CTTGGCTACTTTCTCTAGCTCCTCCATTG  121

seq1: chr14_112628721_112629361
seq2: B6Ng01-167A07.g_255_896 (reverse)

seq1  GTGTAATCGATGGATTTC-AAAATGATTCAGTTTTACTGACCCAGTTTCA  49
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  GTGTAATCGATGGATTTCAAAAATGATTCAGTTTTACT-ACCCAGTTTCA  49

seq1  TTCAATGTTGTCCTGAAGCCACCTCACAAAAAATCTCTGACTGCTACATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTTGTCCTGAAGCCACCTCACAAAAAATCTCTGACTGCTACATG  99

seq1  TGGGAGAAG-AAAAATGACTTCCAGTCTTGTTTTTCTCATGTTCCAATCC  148
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAGAAAAAATGACTTCCAGTCTTGTTTTTCTCATGTTCCAATCC  149

seq1  GCACGGACATTGCCAAACTTAACTGCCTTCTTCAGATAGCCCTCATATCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGACATTGCCAAACTTAACTGCCTTCTTCAGATAGCCCTCATATCC  199

seq1  ACGACTTCCATAAGCAATCACTGGTGAGTTCTTTCTAGAAGCAGAAATCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTTCCATAAGCAATCACTGGTGAGTTCTTTCTAGAAGCAGAAATCC  249

seq1  CTTTCAGCTTTTTGCTATCAAAGTAGTGTTGAAACGGGTTAGACATTTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCTTTTTGCTATCAAAGTAGTGTTGAAACGGGTTAGACATTTGC  299

seq1  CTTGATGGTACCTTTCCTATCTTTTTAATGCAAAGCAGTAACCTTCCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGGTACCTTTCCTATCTTTTTAATGCAAAGCAGTAACCTTCCTTT  349

seq1  TGATCCTTAATCACCTTACCACCCTTAATAGTCCTAGATAATTAAAATAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTAATCACCTTACCACCCTTAATAGTCCTAGATAATTAAAATAC  399

seq1  AATTGCATCGTTCACCTCTTCATTTTTTCCTCCTACCATTCCTCTGTCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATCGTTCACCTCTTCATTTTTTCCTCCTACCATTCCTCTGTCCC  449

seq1  CTCCCTCCAATCCTTCACATGACCACCCATTTCTTTTCAACAAAGTAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCAATCCTTCACATGACCACCCATTTCTTTTCAACAAAGTAATG  499

seq1  ACTACTTCCTGTGTGTACATACATGTTCAATGTGTTGTATGAATAGTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCCTGTGTGTACATACATGTTCAATGTGTTGTATGAATAGTTAA  549

seq1  ATAAAACCTGAGTCATTTTTTGTATGTATATACTTTCAACATTGACCACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCTGAGTCATTTTTTGTATGTATATACTTTCAACATTGACCACT  599

seq1  TAGACAGCTCAGCCATGAGGGCAGCTAATTCTTTCAACATTCA  641
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCTCAGCCATGAGGGCAGCTAATTCTTTCAACATTCA  642