BAC Information

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BAC

Clone NameB6Ng01-167C08
Chromosome1 (Build37)
Map Location 172,694,347 - 172,769,056
singlet/doubletdoublet
Overlap geneAtf6
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167C08.bB6Ng01-167C08.g
ACCDH958720DH958721
length1,0481,203
definitionDH958720|Mus musculus domesticus DNA, BAC clone: B6Ng01-167C08, 5' end.DH958721|Mus musculus domesticus DNA, BAC clone: B6Ng01-167C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,768,206 - 172,769,056)(172,694,347 - 172,695,553)
sequence
gaattcactctgtaggccaggctggcctggaactcagagatccgcctgcc
tctgtctcctgagtgtagggattaaaaaaggtgtgcgccaccacctccag
cccgagatctctagcaagataaagatagattttttttttttgcgcagctt
atcagttccagagattaaaagtatacattttgaatttcaataattttata
tgatctgaaaactatatttttgatgagcatgtgccaataaaatggtttgt
ttttataatataatctttggtattaatattataatctgaagtttaattat
gtatctttcatactttttaaaaaatttgaccttggaatgagaagaaggaa
gtgctggggagatggctttatcagtaaagcgcttgccgcagaagcactag
gacctgagctcagattcccagcgcccacatggaaagctgggtgccctagt
gcctctctagaagtaggcagatccctggaggtcaccaaccagcctgtcta
gccaattgatccaatttcaacgagagaccgtttcaaatctaaggcagaga
gccactgaagaagtacccagcagcagcctctggcctccacacacatgtgc
actcacgtgtatgtgcattcacgtgaaaacacgtacatgcatatactatg
tggacaaaaaagaaaaatggaatagatgtgattcctgcaggcttaatgct
ttgaaatttggtttcagttaaattttctaactttatactacagtgtcatt
attttcttgaactcaaaaatcctttctcagtatcctaagagcttggttta
tagccatatattattttctatccaatacaaattcatttaaaaccatagct
aaattcttaataatcgtttctcattatgtattttctcagtccatagaaac
tgacagacaaccctgattatcttgtgtagctgagctatttttctgctgtt
agagagagtactttcgggcactggtgtactgtaatcccacccttgagagc
tgagctagagtgtgagctgagctagctgggtcacagcagcttcaggca
gaattctaactacaagtgtatgtgtgaatgcatgccacatgtgcggggta
taccctcaggtgccagaaggacatgttggatccctggagctgaagtacag
gcagttgtgagctgctgttccttcagtgttggtaagagaactcaggtctt
ctggaagaataagaagtactcttaaccattgagccacctccctagcccta
gtaaggaacattttttatggacaaaataaagttatcttaacatataaatt
tagaaaccatattggttctttacataatctttagttgggaaaaaattaca
gtgtattctaaaaaaaagaaaatcaacttttctcaacttcacagaacaaa
attctccccctggaggaaatgttaggttaactcattgaattctatttgct
tacatatttctggaattctttcaatgtaacttaatttcttctactgctgg
agagcactaaagtgcaggaaaaaccccagtctgatctggaagatagtcca
ttttgggacttggctttgtgatgaatgagtggtggggtgctgtagaattt
cttcctataaataataagggcaaaaccacctttttatgtctctgaaatat
aaagtggaaactctatcaagaaactgcaaaataaactttacaagcagtat
cacttgaggcaaatattactttcaatatgccattgttgtaaaagtttatg
gaacacgagattaaataagaagctaatatggccaaactgtgagaggaatt
taattctcctgattgtagatttacttcctgttcatgaactcattcaaggt
tttcactgataagaaacaatagcacttgacattctccacacaaaagacac
tatatgagcttactgctgaaatattgtatgtttaaatgataaaattcagc
tattgagtgaagattcatcaaaaagggcaaaaaaaaaaacaaacaaaaaa
acaaaccaaacaaaaccacaaatgaataaccatccatatagagacttttc
tcagttagggtttcattgctacaaagaagacacctttataaggttactct
tataaggaaaacaataattgaagactggcttacagtttcagaggtttaat
ccattaatcatcatggtgggagcatggcagacatggtgttcagaggccag
gattctacattcttgtatctgagggcagcaggagaagaacctgtcttctg
cag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172768206_172769056
seq2: B6Ng01-167C08.b_48_898 (reverse)

seq1  TAGCTATGGTTTTAAATGAATTTGTATTGGATAGAAAATAATATATGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGGTTTTAAATGAATTTGTATTGGATAGAAAATAATATATGGCT  50

seq1  ATAAACCAAGCTCTTAGGATACTGAGAAAGGATTTTTGAGTTCAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCAAGCTCTTAGGATACTGAGAAAGGATTTTTGAGTTCAAGAAAA  100

seq1  TAATGACACTGTAGTATAAAGTTAGAAAATTTAACTGAAACCAAATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACACTGTAGTATAAAGTTAGAAAATTTAACTGAAACCAAATTTCA  150

seq1  AAGCATTAAGCCTGCAGGAATCACATCTATTCCATTTTTCTTTTTTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTAAGCCTGCAGGAATCACATCTATTCCATTTTTCTTTTTTGTCC  200

seq1  ACATAGTATATGCATGTACGTGTTTTCACGTGAATGCACATACACGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTATATGCATGTACGTGTTTTCACGTGAATGCACATACACGTGAG  250

seq1  TGCACATGTGTGTGGAGGCCAGAGGCTGCTGCTGGGTACTTCTTCAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGTGTGTGGAGGCCAGAGGCTGCTGCTGGGTACTTCTTCAGTGG  300

seq1  CTCTCTGCCTTAGATTTGAAACGGTCTCTCGTTGAAATTGGATCAATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCCTTAGATTTGAAACGGTCTCTCGTTGAAATTGGATCAATTGG  350

seq1  CTAGACAGGCTGGTTGGTGACCTCCAGGGATCTGCCTACTTCTAGAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGGCTGGTTGGTGACCTCCAGGGATCTGCCTACTTCTAGAGAGG  400

seq1  CACTAGGGCACCCAGCTTTCCATGTGGGCGCTGGGAATCTGAGCTCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGGCACCCAGCTTTCCATGTGGGCGCTGGGAATCTGAGCTCAGGT  450

seq1  CCTAGTGCTTCTGCGGCAAGCGCTTTACTGATAAAGCCATCTCCCCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGCTTCTGCGGCAAGCGCTTTACTGATAAAGCCATCTCCCCAGCA  500

seq1  CTTCCTTCTTCTCATTCCAAGGTCAAATTTTTTAAAAAGTATGAAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTTCTCATTCCAAGGTCAAATTTTTTAAAAAGTATGAAAGATA  550

seq1  CATAATTAAACTTCAGATTATAATATTAATACCAAAGATTATATTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTAAACTTCAGATTATAATATTAATACCAAAGATTATATTATAAA  600

seq1  AACAAACCATTTTATTGGCACATGCTCATCAAAAATATAGTTTTCAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCATTTTATTGGCACATGCTCATCAAAAATATAGTTTTCAGATC  650

seq1  ATATAAAATTATTGAAATTCAAAATGTATACTTTTAATCTCTGGAACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATTATTGAAATTCAAAATGTATACTTTTAATCTCTGGAACTGA  700

seq1  TAAGCTGCGCAAAAAAAAAAAATCTATCTTTATCTTGCTAGAGATCTCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGCGCAAAAAAAAAAAATCTATCTTTATCTTGCTAGAGATCTCGG  750

seq1  GCTGGAGGTGGTGGCGCACACCTTTTTTAATCCCTACACTCAGGAGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGTGGTGGCGCACACCTTTTTTAATCCCTACACTCAGGAGACAG  800

seq1  AGGCAGGCGGATCTCTGAGTTCCAGGCCAGCCTGGCCTACAGAGTGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCGGATCTCTGAGTTCCAGGCCAGCCTGGCCTACAGAGTGAATT  850

seq1  C  851
      |
seq2  C  851

seq1: chr1_172694347_172695553
seq2: B6Ng01-167C08.g_69_1271

seq1  GAATTCTAACTACAAGTGTATGTGTGAATGCATGCCACATGTGCGGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTACAAGTGTATGTGTGAATGCATGCCACATGTGCGGGGTA  50

seq1  TACCCTCAGGTGCCAGAAGGACATGTTGGATCCCTGGAGCTGAAGTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCAGGTGCCAGAAGGACATGTTGGATCCCTGGAGCTGAAGTACAG  100

seq1  GCAGTTGTGAGCTGCTGTTCCTTCAGTGTTGGTAAGAGAACTCAGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGTGAGCTGCTGTTCCTTCAGTGTTGGTAAGAGAACTCAGGTCTT  150

seq1  CTGGAAGAATAAGAAGTACTCTTAACCATTGAGCCACCTCCCTAGCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAATAAGAAGTACTCTTAACCATTGAGCCACCTCCCTAGCCCTA  200

seq1  GTAAGGAACATTTTTTATGGACAAAATAAAGTTATCTTAACATATAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAACATTTTTTATGGACAAAATAAAGTTATCTTAACATATAAATT  250

seq1  TAGAAACCATATTGGTTCTTTACATAATCTTTAGTTGGGAAAAAATTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCATATTGGTTCTTTACATAATCTTTAGTTGGGAAAAAATTACA  300

seq1  GTGTATTCTAAAAAAAAGAAAATCAACTTTTCTCAACTTCACAGAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCTAAAAAAAAGAAAATCAACTTTTCTCAACTTCACAGAACAAA  350

seq1  ATTCTCCCCCTGGAGGAAATGTTAGGTTAACTCATTGAATTCTATTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCCCTGGAGGAAATGTTAGGTTAACTCATTGAATTCTATTTGCT  400

seq1  TACATATTTCTGGAATTCTTTCAATGTAACTTAATTTCTTCTACTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTTCTGGAATTCTTTCAATGTAACTTAATTTCTTCTACTGCTGG  450

seq1  AGAGCACTAAAGTGCAGGAAAAACCCCAGTCTGATCTGGAAGATAGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTAAAGTGCAGGAAAAACCCCAGTCTGATCTGGAAGATAGTCCA  500

seq1  TTTTGGGACTTGGCTTTGTGATGAATGAGTGGTGGGGTGCTGTAGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGACTTGGCTTTGTGATGAATGAGTGGTGGGGTGCTGTAGAATTT  550

seq1  CTTCCTATAAATAATAAGGGCAAAACCACCTTTTTATGTCTCTGAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATAAATAATAAGGGCAAAACCACCTTTTTATGTCTCTGAAATAT  600

seq1  AAAGTGGAAACTCTATCAAGAAACTGCAAAATAAACTTTACAAGCAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAAACTCTATCAAGAAACTGCAAAATAAACTTTACAAGCAGTAT  650

seq1  CACTTGAGGCAAATATTACTTTCAATATGCCATTGTTGTAAAAGTTTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGGCAAATATTACTTTCAATATGCCATTGTTGTAAAAGTTTATG  700

seq1  GAACACGAGATTAAATAAGAAGCTAATATGGCCAAACTGTGAGAGGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGAGATTAAATAAGAAGCTAATATGGCCAAACTGTGAGAGGAATT  750

seq1  TAATTCTCCTGATTGTAGATTTACTTCCTGTTCATGAACTCATTCAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCCTGATTGTAGATTTACTTCCTGTTCATGAACTCATTCAAGGT  800

seq1  TTTCACTGATAAGAAACAATAGCACTTGACATTCTCCACACAAAAGACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGATAAGAAACAATAGCACTTGACATTCTCCACACAAAAGACAC  850

seq1  TATATGAGCTTACTGCTGAAATATTGTATGTTTAAATGATAAAATTCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGCTTACTGCTGAAATATTGTATGTTTAAATGATAAAATTCAGC  900

seq1  TATTGAGTTGAAGATTCATCAAAAAGGGCAAAAAAAAAAAACAAACAAAA  950
      ||||||| ||||||||||||||||||||| |||||||||||||||| |||
seq2  TATTGAG-TGAAGATTCATCAAAAAGGGC-AAAAAAAAAAACAAAC-AAA  947

seq1  AAAACAAACCAAACAAAACCCACAAATGAATAACCATCCAATATAGAAGA  1000
      |||||||||||||||||| |||||||||||||||||||| |||||| |||
seq2  AAAACAAACCAAACAAAA-CCACAAATGAATAACCATCC-ATATAG-AGA  994

seq1  C-TGTCTCAGTTAGGGTTTCATTGCTACAAAG-AGACACCTTTATAAGGT  1048
      | | |||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTTCTCAGTTAGGGTTTCATTGCTACAAAGAAGACACCTTTATAAGGT  1044

seq1  AACTCTTATAAAGGAAAACAATTAATTG-AGACTGGCTTACAGTTTCAGA  1097
       |||||||| ||||||||||| |||||| |||||||||||||||||||||
seq2  TACTCTTAT-AAGGAAAACAA-TAATTGAAGACTGGCTTACAGTTTCAGA  1092

seq1  GGTTTAATCCATT-ATCATCATGGTGGGAAGCATGGCAGACATGGTG-TC  1145
      ||||||||||||| |||||||||||||| |||||||||||||||||| ||
seq2  GGTTTAATCCATTAATCATCATGGTGGG-AGCATGGCAGACATGGTGTTC  1141

seq1  AGAAGGGCCAAGAATTCTACA-TCTTG-ATCTGAAGGCAGCCAGGAGAAG  1193
      |||  |||| || |||||||| ||||| |||||| ||||| |||||||||
seq2  AGA--GGCC-AGGATTCTACATTCTTGTATCTGAGGGCAG-CAGGAGAAG  1187

seq1  A--CTGTCTTCTGCAG  1207
      |  |||||||||||||
seq2  AACCTGTCTTCTGCAG  1203