BAC Information

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BAC

Clone NameB6Ng01-167D16
Chromosome1 (Build37)
Map Location 173,627,673 - 173,628,815
singlet/doubletsinglet
Overlap geneCd48
Upstream geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7
Downstream geneLOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167D16.bB6Ng01-167D16.g
ACCDH958783DH958784
length1,1271,233
definitionDH958783|Mus musculus domesticus DNA, BAC clone: B6Ng01-167D16, 5' end.DH958784|Mus musculus domesticus DNA, BAC clone: B6Ng01-167D16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaatgcttgggctttgcgcccaatcagaaactcataaaaaaat
tcacttatttatagtttgcttaaattgtgtaatgtttgtttctatgtaat
ctgtctaaatacttaataaactcactaactttgcttcattctggttcacc
acagaattcttttctgtaagatcatcaaagatccaattttacccaaatgg
atgtccccaaaggaacaagaaagtctgtagtatgtcttcttgctacacag
atagagacaagaacaaagaaatctatgaggccatgaataagtggaaactg
tacatctttttttctctttcaaaataggcggatttaatactatattctcc
ttggtccagaattaaaaatagtttcagaaataatttccattttcctcagg
aaaagaccagttagcctgttctgcagttaaatttatgtgttctagccttt
gtctcatggctttctacaatttgtaagatggccataggcacagtgtgtgt
ttggggtgggtgataactaaaccagtgacctaaagagttcactttccccc
ttggagatttctgttcaagtaaagctgtatccttggctaccccttggaaa
agaattcatggtgaaccagaatgaagcaaacagtaaatttattaagtact
tagggagtcatagaaaaagacatcacatcatctgggcaaactaaacaaat
ccatatttctttatgagcttccgattcacaatggagacaaagatgggagg
tttatagatttaagcattctataatgacagtgtgacgagcttcagtttct
ctgtgtataggttgaggcccttcagattctctctgaatctgaactccaga
attcttgagggacagagtagctcactggtgcttgaagtgggttatggttg
gagaacaggccctgagtatctctgatagtcaggaaacacagaagccagct
ggtgcagaaacagaggaaagccatccagtgactgtcacagctggggatcc
atcccatatacagtcaccaaacccagacactattgtggatgccacagtgc
tactgacagacctgatacagctgtctctgagagacttgccagtgctgaca
atacagagtggatgctcaagcatccgt
gaattcttttccttcctatatttctattagtcttaggttttgtcttttct
tagtgtcctaaattttttgtattttttgttaggactttttttttttggtt
taacattttctttgactgatatattcattttctctattgtatcttcaatg
cctaatattctctcttccatctctcatattttgttggtgaagtttacctc
tgtaatttctgttcaaattcttaaaattttcatttctagaattctctcgg
ttttagttttctttattgattttattttcattttcaagtcttatacagtt
tattcacttctttccactgtttgtttggattttgtggacttattaatttt
ctctttgaggacctctatcttctactccaaccttccttcccccaattcat
tccagtaaacaagtccccaaaaccagtgttccttgtgaacacaccaccca
agcaggcctgggaaacatgtaagctaacagaaggcttcctctcctacaaa
tctaaagctccagcttcatccctagctctgcaacagaacacctgctgcag
ccttccttctaatgtccccactcctgcacatccccaatcccacatctatt
gtggttccacagatcttccctttctacccaccttctccccacttgttggt
ttatcccagccctcatcttcagcaggcactccctgctaacccagatcatt
cctgcccagaagcagataggagcctgtatatcttcctgtttccttctgtt
cctctagatccaacttcccagtctcatccccagtatctagagaagaccct
gtgggttgacctcactttactgtctccctgattccaaggggatgaaataa
acagatcctggctaaacactcttcttctctctcctatgaacactttcata
ctcctaacctatcacaggtcctaagtgttagctcccaatacccagaaaca
tcttttattgagaacctccagtggctataaatgtcagatccaagaaatgt
cctactaaaacatagagctaccacactctcctgaaattcagagagaaaca
gaaaacaggacaagccacctacccacaaagacatccaacatcatcaccct
gattttattcatcccagtccagattcctaattccaacaaagccagtcata
cgcgctggcagaagtccatttatccagcatttcacaagatgcctgaattt
ccgaatagcgcgacccagaagagaccaattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173627673_173628815
seq2: B6Ng01-167D16.b_45_1171

seq1  GAATTCTCAATGCTTGGGCTTTGCGCCCAATCAGAAACTCATAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATGCTTGGGCTTTGCGCCCAATCAGAAACTCATAAAAAAAT  50

seq1  TCACTTATTTATAGTTTGCTTAAATTGTGTAATGTTTGTTTCTATGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTATTTATAGTTTGCTTAAATTGTGTAATGTTTGTTTCTATGTAAT  100

seq1  CTGTCTAAATACTTAATAAACTCACTAACTTTGCTTCATTCTGGTTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAAATACTTAATAAACTCACTAACTTTGCTTCATTCTGGTTCACC  150

seq1  ACAGAATTCTTTTCTGTAAGATCATCAAAGATCCAATTTTACCCAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTCTTTTCTGTAAGATCATCAAAGATCCAATTTTACCCAAATGG  200

seq1  ATGTCCCCAAAGGAACAAGAAAGTCTGTAGTATGTCTTCTTGCTACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCCAAAGGAACAAGAAAGTCTGTAGTATGTCTTCTTGCTACACAG  250

seq1  ATAGAGACAAGAACAAAGAAATCTATGAGGCCATGAATAAGTGGAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGACAAGAACAAAGAAATCTATGAGGCCATGAATAAGTGGAAACTG  300

seq1  TACATCTTTTTTTCTCTTTCAAAATAGGCGGATTTAATACTATATTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTTTTTTCTCTTTCAAAATAGGCGGATTTAATACTATATTCTCC  350

seq1  TTGGTCCAGAATTAAAAATAGTTTCAGAAATAATTTCCATTTTCCTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCAGAATTAAAAATAGTTTCAGAAATAATTTCCATTTTCCTCAGG  400

seq1  AAAAGACCAGTTAGCCTGTTCTGCAGTTAAATTTATGTGTTCTAGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCAGTTAGCCTGTTCTGCAGTTAAATTTATGTGTTCTAGCCTTT  450

seq1  GTCTCATGGCTTTCTACAATTTGTAAGATGGCCATAGGCACAGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGGCTTTCTACAATTTGTAAGATGGCCATAGGCACAGTGTGTGT  500

seq1  TTGGGGTGGGTGATAACTAAACCAGTGACCTAAAGAGTTCACTTTCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGGGTGATAACTAAACCAGTGACCTAAAGAGTTCACTTTCCCCC  550

seq1  TTGGAGATTTCTGTTCAAGTAAAGCTGTATCCTTGGCTACCCCTTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATTTCTGTTCAAGTAAAGCTGTATCCTTGGCTACCCCTTGGAAA  600

seq1  AGAATTCATGGTGAACCAGAATGAAGCAAACAGTAAATTTATTAAGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCATGGTGAACCAGAATGAAGCAAACAGTAAATTTATTAAGTACT  650

seq1  TAGGGAGTCATAGAAAAAGACATCACATCATCTGGGCAAACTAAACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTCATAGAAAAAGACATCACATCATCTGGGCAAACTAAACAAAT  700

seq1  CCATATTTCTTTATGAGCTTCCGATTCACAATGGAGACAAAGATGGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTCTTTATGAGCTTCCGATTCACAATGGAGACAAAGATGGGAGG  750

seq1  TTTATAGATTTAAGCATTCTATAATGACAGTGTGACGAGCTTCAGGTTTC  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTATAGATTTAAGCATTCTATAATGACAGTGTGACGAGCTTCA-GTTTC  799

seq1  TCTGTGTATAGGTTGAGGCCCTTCAGGATTCTCTCTGAATCTGAACTCCA  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTGTGTATAGGTTGAGGCCCTTCA-GATTCTCTCTGAATCTGAACTCCA  848

seq1  GAATTCTTGAGGGACAGAGTAGCTCACTGGTGCTTGAAGTGGGTTATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGGGACAGAGTAGCTCACTGGTGCTTGAAGTGGGTTATGGT  898

seq1  TGGAGAACAGGCCCTGAGTATCTCTGATAGTCAGGAAACACAGAAGCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACAGGCCCTGAGTATCTCTGATAGTCAGGAAACACAGAAGCCAG  948

seq1  CTGGTGCAGAAACAGAAGGAAAGGCCATCCAGTGACTGTCACAGCTGGGG  1000
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  CTGGTGCAGAAACAG-AGGAAA-GCCATCCAGTGACTGTCACAGCTGGGG  996

seq1  ATCCATCCCATATACAGTCACCAAACCCAGACACTATTGTGGATGCCAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  ATCCATCCCATATACAGTCACCAAACCCAGACACTATTGTGGATGCCA--  1044

seq1  AAGTGCTTACTGACAGGAACCTGATACAGCTGTCTCCTGAGAGACTTTGC  1100
       ||||| |||||||||  ||||||||||||||||| ||||||||| ||||
seq2  CAGTGC-TACTGACAG--ACCTGATACAGCTGTCT-CTGAGAGAC-TTGC  1089

seq1  CAGTGCCTGACAAATACAGAAGTGGATGCTCATAGCCATCCGT  1143
      ||||| ||||| ||||||| |||||||||||| || |||||||
seq2  CAGTG-CTGAC-AATACAG-AGTGGATGCTCA-AG-CATCCGT  1127