BAC Information

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BAC

Clone NameB6Ng01-167D21
Chromosome1 (Build37)
Map Location 57,326,668 - 57,454,630
singlet/doubletdoublet
Overlap geneLOC383509, 1700066M21Rik, 1110034B05Rik
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
Downstream gene9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167D21.bB6Ng01-167D21.g
ACCDH958791DH958792
length1,1501,154
definitionDH958791|Mus musculus domesticus DNA, BAC clone: B6Ng01-167D21, 5' end.DH958792|Mus musculus domesticus DNA, BAC clone: B6Ng01-167D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,326,668 - 57,327,826)(57,453,456 - 57,454,630)
sequence
gaattcaaaccaaactaagtgactaagtatctgcagggtgagccagccag
gagtctgggctacagatccagatcagccctggtcgtaactgcagttttgg
ccccacctggtggtggttttactccgtgatttagacactgctgaggaact
tcggagtcctggggctgacttggtttttcagagtggcgggactgatttca
gatttttttccaattaagtttattagtcaactcggcggaagttcagttgg
gcggcacctggtgctgtgggcttgtcctttgcgtccctcgttgagaaaac
agggctgtgctcgggcctgcacaggatgcacagacagtccaaggaggggg
gtcacaaaactggatgccaacacatctcccaggtacagaaaggactactt
gggcaatgcctcagagtgcaaccgcctcaggaaggacagatccagagggg
acttctgaagaaattctcagcatctaggagtgtggtcctcctataaaact
gctaaaggaggaacaggctaactcactaaacatacacagagattttaact
gcatcacaggacaccagaggcaaaggctgaccagatgaaggagaaggaat
ctggagtcctagcttaggttcaagagcattgcctagggttaagactgagt
tatgaccttgcataacaggagatatgacaggagagagttaacactgattc
aacagaattggggaacttggggtcatctacgtcaggggacgtgttgagaa
aaaccatatgatataatatcagcagagtcttggttgacattccacaagtc
agattaaatagtgatgccaaaacatgcacacaaggcttcttgtatctctt
atctgggtatttaccttcgtcacattcttgcaaaatattagggtagacat
tatgaaggaaaatgaacatgaatctaaacatatatagagaacagcattca
tcactttccagaaaccctttgtgtttactagagatgatagttttatgtac
catgtgccattgctggaccacgccaaccccactttttctaagcagtagcc
ttcaagaacatttagtgcttatgagtcagaaaactactgctgcagatgtg
tctatgcagtgatgaaagggacctaacacaggtaataaacatcacctgcc

gaattctttgtcttgctgttgatatagtactatcttcatgattgggaaat
gtttgtgcaattttttaaaaaattaattaatttagggttagaagccagag
tctggtgatagctaggaagctctctgctgataatctacatctggaaagtg
cttttagttctggaaagtgctaggacaactggagcaaaagtagcactcta
acttgaagagtatggtgtactggaaataagtgttgttccttaaatgtctg
accattttctctagaagccataacatggcgggtagagcaggagcgagggg
cggaaatgtcttccctagtaagctcgttactcatgtgagactagtagctt
gtctcatttacaagatttgtttgcccattacacttgaaggcaggggccag
tcagagccccaaagtctgtgtattttaattttacacttagagtttacatg
gatgagttgcttgcatgtatgtatgtgcactgcattaagtgcactgtgtg
tgtgtgtgtgcgcgcgcgtgcgtggtgcccaaggaagccagaagaggcca
ctggatcctctgaaatgggagttcctgatggttgtgagccaggcacgtgg
gagctggaaactgaacttacatcgtcctcaagagtaacacatgctcttaa
acactgagccctctctccagctctagtttgtgtaatttcaaagtaacctg
acactgtggaagcacctctttcagtaacttgaacagagggacagtgacct
ttgaagatccatctgtaccatatatttaaaatctttaaatctaaaaattc
aactaccagtcaaatttatatactgctagatgagtattgagtattcagga
ttccatccatgtggattatactcaaaactgcattttcaaagcatgtgaca
ctcaagtataccaagcctgcatgcatagtggatgaattactagttggtat
gttattttacatctaaggattctgttatgtttatttcagaactttacctt
taacaagtgggtcaagaggagcagccgaagaaatacataagaatcttcat
tcagaagtaattttctttatttttttagaaataaccaaagccaaatggaa
tgggttttggtgtgtgtggaagccgaaatattatgaggaaggccctttga
cctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_57326668_57327826
seq2: B6Ng01-167D21.b_46_1195

seq1  GAATTCAAACCAAACTAAGTGACTAAGTATCTGCAGGGTGAGCCAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCAAACTAAGTGACTAAGTATCTGCAGGGTGAGCCAGCCAG  50

seq1  GAGTCTGGGCTACAGATCCAGATCAGCCCTGGTCGTAACTGCAGTTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGGCTACAGATCCAGATCAGCCCTGGTCGTAACTGCAGTTTTGG  100

seq1  CCCCACCTGGTGGTGGTTTTACTCCGTGATTTAGACACTGCTGAGGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTGGTGGTGGTTTTACTCCGTGATTTAGACACTGCTGAGGAACT  150

seq1  TCGGAGTCCTGGGGCTGACTTGGTTTTTCAGAGTGGCGGGACTGATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGTCCTGGGGCTGACTTGGTTTTTCAGAGTGGCGGGACTGATTTCA  200

seq1  GATTTTTTTCCAATTAAGTTTATTAGTCAACTCGGCGGAAGTTCAGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTCCAATTAAGTTTATTAGTCAACTCGGCGGAAGTTCAGTTGG  250

seq1  GCGGCACCTGGTGCTGTGGGCTTGTCCTTTGCGTCCCTCGTTGAGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCACCTGGTGCTGTGGGCTTGTCCTTTGCGTCCCTCGTTGAGAAAAC  300

seq1  AGGGCTGTGCTCGGGCCTGCACAGGATGCACAGACAGTCCAAGGAGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTGCTCGGGCCTGCACAGGATGCACAGACAGTCCAAGGAGGGGG  350

seq1  GTCACAAAACTGGATGCCAACACATCTCCCAGGTACAGAAAGGACTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAAACTGGATGCCAACACATCTCCCAGGTACAGAAAGGACTACTT  400

seq1  GGGCAATGCCTCAGAGTGCAACCGCCTCAGGAAGGACAGATCCAGAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATGCCTCAGAGTGCAACCGCCTCAGGAAGGACAGATCCAGAGGGG  450

seq1  ACTTCTGAAGAAATTCTCAGCATCTAGGAGTGTGGTCCTCCTATAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAAGAAATTCTCAGCATCTAGGAGTGTGGTCCTCCTATAAAACT  500

seq1  GCTAAAGGAGGAACAGGCTAACTCACTAAACATACACAGAGATTTTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGGAGGAACAGGCTAACTCACTAAACATACACAGAGATTTTAACT  550

seq1  GCATCACAGGACACCAGAGGCAAAGGCTGACCAGATGAAGGAGAAGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACAGGACACCAGAGGCAAAGGCTGACCAGATGAAGGAGAAGGAAT  600

seq1  CTGGAGTCCTAGCTTAGGTTCAAGAGCATTGCCTAGGGTTAAGACTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCCTAGCTTAGGTTCAAGAGCATTGCCTAGGGTTAAGACTGAGT  650

seq1  TATGACCTTGCATAACAGGAGATATGACAGGAGAGAGTTAACACTGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTTGCATAACAGGAGATATGACAGGAGAGAGTTAACACTGATTC  700

seq1  AACAGAATTGGGGAACTTGGGGTCATCTACGTCAGGGGACGTGTTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATTGGGGAACTTGGGGTCATCTACGTCAGGGGACGTGTTGAGAA  750

seq1  AAACCATATGATATAATATCAGCAGAGTCTTGGTTGACATTCCACAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATATGATATAATATCAGCAGAGTCTTGGTTGACATTCCACAAGTC  800

seq1  AGATTAAATAGTGATGCCAAAACATGCACACAAGGCTTCTTGTATCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAATAGTGATGCCAAAACATGCACACAAGGCTTCTTGTATCTCTT  850

seq1  ATCTGGGTATTTACCTTCGTCACATTCTTGCAAAATATTAGGGTAGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTATTTACCTTCGTCACATTCTTGCAAAATATTAGGGTAGACAT  900

seq1  TATGAAGGAAAATGAACATGAATCTAAACATATATAGAGAACAGCATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGAAAATGAACATGAATCTAAACATATATAGAGAACAGCATTCA  950

seq1  TCACTTTCCAGAAACCCTTTGTGTTTACTAGAGATGATAGTTTTATGTAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCACTTTCCAGAAACCCTTTGTGTTTACTAGAGATGATAGTTTTATGT-A  999

seq1  CCATGTGCCATTGCTGGACCACGCCAACCCCACTTTTTCTAAAGCAGTTA  1050
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  CCATGTGCCATTGCTGGACCACGCCAACCCCACTTTTTCT-AAGCAG-TA  1047

seq1  GCCTTCAAGGACATTTTAGTGCCTATGAGGTCAGAAAACTAACTGGCTGC  1100
      ||||||||| ||| |||||||| ||||| ||||||||||| ||| |||||
seq2  GCCTTCAAGAACA-TTTAGTGCTTATGA-GTCAGAAAACT-ACT-GCTGC  1093

seq1  AGATGTGTCTATGCAGTGAAATGATAGGGACCTAGCACAGTTAATAAACA  1150
      ||||||||||||||||||  |||| ||||||||| ||||| |||||||||
seq2  AGATGTGTCTATGCAGTG--ATGAAAGGGACCTAACACAGGTAATAAACA  1141

seq1  TCACCTGCC  1159
      |||||||||
seq2  TCACCTGCC  1150

seq1: chr1_57453456_57454630
seq2: B6Ng01-167D21.g_66_1219 (reverse)

seq1  CAGGTTCCAAAAGGCCTTTCCTCATAAATTACTCTGGCCTCCACACACAC  50
      |||||  |||| |||| ||||||||||  || |  ||| |||||||||||
seq2  CAGGT--CAAAGGGCC-TTCCTCATAA--TATTTCGGCTTCCACACACAC  45

seq1  ACAAAACCCATTTCTATATGGCTTTGGTTATTTCTAAAAAAAAAAAAAAA  100
       ||||||||| ||| || |||||||||||||||||          |||||
seq2  -CAAAACCCA-TTCCATTTGGCTTTGGTTATTTCT----------AAAAA  83

seq1  AAAAAAAAAAATTACCTCTGAAATGAAGAATTCTTTATGTGTTTCTTCGG  150
      || ||| |||||||| |||| ||||||| |||| |||||| |||||||||
seq2  AATAAAGAAAATTACTTCTG-AATGAAG-ATTC-TTATGTATTTCTTCGG  130

seq1  CTGCT-CTCTGGACCAACTTGTTAAAAGGTAAAGTTCTGAAATAAACATA  199
      ||||| |||| |||| ||||||| ||||||||||||||||||||||||||
seq2  CTGCTCCTCTTGACCCACTTGTT-AAAGGTAAAGTTCTGAAATAAACATA  179

seq1  ACAGAATCCTTAGATGTAAAAATAACATACCAACTAGTAATTCATCCACT  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAGAATCCTTAGATGT-AAAATAACATACCAACTAGTAATTCATCCACT  228

seq1  ATGCATGCAGGCTTGGTATACTTGAGTGTCACATGCTTTGAAAATGCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCAGGCTTGGTATACTTGAGTGTCACATGCTTTGAAAATGCAGT  278

seq1  TTTGAGTATAATCCACATGGATGGAATCCTGAATACTCAATACTCATCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTATAATCCACATGGATGGAATCCTGAATACTCAATACTCATCTA  328

seq1  GCAGTATATAAATTTGACTGGTAGTTGAATTTTTAGATTTAAAGATTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATATAAATTTGACTGGTAGTTGAATTTTTAGATTTAAAGATTTTA  378

seq1  AATATATGGTACAGATGGATCTTCAAAGGTCACTGTCCCTCTGTTCAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGGTACAGATGGATCTTCAAAGGTCACTGTCCCTCTGTTCAAGT  428

seq1  TACTGAAAGAGGTGCTTCCACAGTGTCAGGTTACTTTGAAATTACACAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAGAGGTGCTTCCACAGTGTCAGGTTACTTTGAAATTACACAAA  478

seq1  CTAGAGCTGGAGAGAGGGCTCAGTGTTTAAGAGCATGTGTTACTCTTGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCTGGAGAGAGGGCTCAGTGTTTAAGAGCATGTGTTACTCTTGAG  528

seq1  GACGATGTAAGTTCAGTTTCCAGCTCCCACGTGCCTGGCTCACAACCATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATGTAAGTTCAGTTTCCAGCTCCCACGTGCCTGGCTCACAACCATC  578

seq1  AGGAACTCCCATTTCAGAGGATCCAGTGGCCTCTTCTGGCTTCCTTGGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTCCCATTTCAGAGGATCCAGTGGCCTCTTCTGGCTTCCTTGGGC  628

seq1  ACCACGCACGCGCGCGCACACACACACACACAGTGCACTTAATGCAGTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCACGCGCGCGCACACACACACACACAGTGCACTTAATGCAGTGC  678

seq1  ACATACATACATGCAAGCAACTCATCCATGTAAACTCTAAGTGTAAAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATGCAAGCAACTCATCCATGTAAACTCTAAGTGTAAAATT  728

seq1  AAAATACACAGACTTTGGGGCTCTGACTGGCCCCTGCCTTCAAGTGTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACACAGACTTTGGGGCTCTGACTGGCCCCTGCCTTCAAGTGTAAT  778

seq1  GGGCAAACAAATCTTGTAAATGAGACAAGCTACTAGTCTCACATGAGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAACAAATCTTGTAAATGAGACAAGCTACTAGTCTCACATGAGTAA  828

seq1  CGAGCTTACTAGGGAAGACATTTCCGCCCCTCGCTCCTGCTCTACCCGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTTACTAGGGAAGACATTTCCGCCCCTCGCTCCTGCTCTACCCGCC  878

seq1  ATGTTATGGCTTCTAGAGAAAATGGTCAGACATTTAAGGAACAACACTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGGCTTCTAGAGAAAATGGTCAGACATTTAAGGAACAACACTTA  928

seq1  TTTCCAGTACACCATACTCTTCAAGTTAGAGTGCTACTTTTGCTCCAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTACACCATACTCTTCAAGTTAGAGTGCTACTTTTGCTCCAGTT  978

seq1  GTCCTAGCACTTTCCAGAACTAAAAGCACTTTCCAGATGTAGATTATCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGCACTTTCCAGAACTAAAAGCACTTTCCAGATGTAGATTATCAG  1028

seq1  CAGAGAGCTTCCTAGCTATCACCAGACTCTGGCTTCTAACCCTAAATTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCTTCCTAGCTATCACCAGACTCTGGCTTCTAACCCTAAATTAA  1078

seq1  TTAATTTTTTAAAAAATTGCACAAACATTTCCCAATCATGAAGATAGTAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTAAAAAATTGCACAAACATTTCCCAATCATGAAGATAGTAC  1128

seq1  TATATCAACAGCAAGACAAAGAATTC  1175
      ||||||||||||||||||||||||||
seq2  TATATCAACAGCAAGACAAAGAATTC  1154