BAC Information

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BAC

Clone NameB6Ng01-167M06
Chromosome1 (Build37)
Map Location 45,397,380 - 45,533,405
singlet/doubletdoublet
Overlap geneCol3a1, Col5a2
Upstream geneLOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640
Downstream geneEG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167M06.bB6Ng01-167M06.g
ACCDH959175DH959176
length1,1181,068
definitionDH959175|Mus musculus domesticus DNA, BAC clone: B6Ng01-167M06, 5' end.DH959176|Mus musculus domesticus DNA, BAC clone: B6Ng01-167M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,532,275 - 45,533,405)(45,397,380 - 45,398,473)
sequence
gaattctgctttttgaccctgtcctctttctcccttttcttctctgtcct
tttattcttaatcttatccacaaaattttactgagatatcccagagaact
aagaaaggcatttagctgtatttcaacataaaactccaaaatatcacttt
gatattatctgtgattatctgggtagtgttgtgtctagagtagttatagc
attcaaaaatcttgtaaatctccatatttgggcttctctacctgaagaaa
cactttttttttcttggagatttatttgtgtcttgacttaagccagcttc
ctattaatgtcaaaacatcttctaaatactgtagtgagtgagtatctaag
cagctttggtcttatccttgttgtatatactctttgaaaatacaaataaa
actctttgaacatacaaataaactatatctatcaggtcttttaaaatgtc
tatttaagttaataattctaagagattaattacacactcttttcctttcc
aggcccctgattgcctctgaggggtttgttatatttagtaaatatgatgt
ttgtatatattctatgtagcagttcccatctaattgaatgaatgcacttt
aattttagattatcagaacatccaaatgattctttttacaagtaggaata
atattgacaattcacgtatttttaattttggttaatttgtttctgagagg
ttatatgatcagctcattgttcaatatctcactcttatgttcactaataa
ttttgtgtataaactatactttctcaagtatttgtctgtatcaagtttta
taatgaataaatgatatggctttggtagtttatgtagtatttcttaaatg
tatacgaaaactacattttaagtacttaagttatcaaataataaattaag
acggaaaaaacaactaatgatccttggatagtctccaacgtatttattta
tttattatttattattatttattattattttaaactccagatttattctc
gtcctggtacaccctcgactgttccacacaccatacctcctccctgatcc
ccaaacccttgtgtctcatgagatgtcccactccacccccaccccaccag
acctctaaacttccgcag
gaattcaattcctggaacattccttaccttcatatttatgtgtttacaga
gttttgttttagtcttgaactaattggttcattgacatttcacagggtac
tgctggctttcccggtgggcgtggtcttcctggtcctcctggcaataatg
taagctctctccagttttttttttttttcaatataacttacagaaagact
agaataagaaaatattttgatacctaccaaatttggcatctaccaaatcc
cacctaaaatctaaaataaataaaaggcaaggaaagcaaaaagacccttt
tctgccatgttaaaatttaaattatttgcagggtaatccagggcccccag
gacccagtggtgctcctggcaaggacggccctccaggtcctgcaggcaac
agtggttctcctggcaaccctggaatagctggaccaaaaggtgatgctgg
acagcctggagagaaggggccacctggtgctcagggtcctccggtgagag
ctattgctgttttgttggtagactgcatattctgataacaaacataataa
gggagctaggattctgtagccataggctgattctttcgtatctattacaa
cagggttccccaggcccacttggaattgcagggctaactggagcacgagg
tcttgctggaccaccaggcatgccaggtccacggggtagccctggacctc
agggtatcaaggtaagcatagtcaccttgcatctgatgtttgctttacta
cagaggtatagagatttcttcactgtatcagatataaaaaggtttctgat
caaggtataaattatcaaagatcttaccttcttgacactcttaggtttgc
aaaaacaaactttcattaagtcttcccagaacacaccggcaagggacgta
gtaaacaagcttgcatatatacacaagcagccacatcacagaaaacatgt
gctttctcaacatcactgttagaaactgtgagcattctcagtgtcactat
actaggaggagaacttttcatctcataatgtatgatacatatgatgtata
acccatctcttgagtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45532275_45533405
seq2: B6Ng01-167M06.b_47_1164 (reverse)

seq1  CTGCGG-AGTTTAGAGGTCTGGTGGGGTGGGGGTGGGAGGTGGGGACATC  49
      |||||| ||||||||||||||||||||||||||| ||||   ||||||| 
seq2  CTGCGGAAGTTTAGAGGTCTGGTGGGGTGGGGGT-GGAG--TGGGACAT-  46

seq1  CTCATGGAGACACAGGGGTTTGGGGGACAGGGAGGAGGTATGGTGTGTGG  99
      ||||| |||||||| ||||||||||  |||||||||||||||||||||||
seq2  CTCAT-GAGACACAAGGGTTTGGGGATCAGGGAGGAGGTATGGTGTGTGG  95

seq1  AACAGTCGGAGGGTGTACCAGGACGAGAATAAATCTGGAGTTTAAAATTA  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||  
seq2  AACAGTC-GAGGGTGTACCAGGACGAGAATAAATCTGGAGTTTAAAAT--  142

seq1  AATAAATAAATAAATAAATAAATAATAAATAAATAAATACGTTTGGAGAC  199
      ||| |||||||||   ||||||||||||||||||||||||| ||||||||
seq2  AAT-AATAAATAA--TAATAAATAATAAATAAATAAATACG-TTGGAGAC  188

seq1  TATTCCAAGGATCATTAGTTGTTTTTTCCGTCTTAATTTATTTATTTGAT  249
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TA-TCCAAGGATCATTAGTTGTTTTTTCCGTCTTAATTTA-TTATTTGAT  236

seq1  AACTTAAGTACTTAAAATGTAGTTTTCGTATACATTTAAGAAATACTACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAGTACTTAAAATGTAGTTTTCGTATACATTTAAGAAATACTACA  286

seq1  TAAACTACCAAAGCCATATCATTTATTCATTATAAAACTTGATACAGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACCAAAGCCATATCATTTATTCATTATAAAACTTGATACAGACA  336

seq1  AATACTTGAGAAAGTATAGTTTATACACAAAATTATTAGTGAACATAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGAGAAAGTATAGTTTATACACAAAATTATTAGTGAACATAAGA  386

seq1  GTGAGATATTGAACAATGAGCTGATCATATAACCTCTCAGAAACAAATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATATTGAACAATGAGCTGATCATATAACCTCTCAGAAACAAATTA  436

seq1  ACCAAAATTAAAAATACGTGAATTGTCAATATTATTCCTACTTGTAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATTAAAAATACGTGAATTGTCAATATTATTCCTACTTGTAAAAA  486

seq1  GAATCATTTGGATGTTCTGATAATCTAAAATTAAAGTGCATTCATTCAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTTGGATGTTCTGATAATCTAAAATTAAAGTGCATTCATTCAAT  536

seq1  TAGATGGGAACTGCTACATAGAATATATACAAACATCATATTTACTAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGAACTGCTACATAGAATATATACAAACATCATATTTACTAAAT  586

seq1  ATAACAAACCCCTCAGAGGCAATCAGGGGCCTGGAAAGGAAAAGAGTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAACCCCTCAGAGGCAATCAGGGGCCTGGAAAGGAAAAGAGTGTG  636

seq1  TAATTAATCTCTTAGAATTATTAACTTAAATAGACATTTTAAAAGACCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATCTCTTAGAATTATTAACTTAAATAGACATTTTAAAAGACCTG  686

seq1  ATAGATATAGTTTATTTGTATGTTCAAAGAGTTTTATTTGTATTTTCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATAGTTTATTTGTATGTTCAAAGAGTTTTATTTGTATTTTCAAA  736

seq1  GAGTATATACAACAAGGATAAGACCAAAGCTGCTTAGATACTCACTCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATACAACAAGGATAAGACCAAAGCTGCTTAGATACTCACTCACT  786

seq1  ACAGTATTTAGAAGATGTTTTGACATTAATAGGAAGCTGGCTTAAGTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTAGAAGATGTTTTGACATTAATAGGAAGCTGGCTTAAGTCAA  836

seq1  GACACAAATAAATCTCCAAGAAAAAAAAAGTGTTTCTTCAGGTAGAGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAATAAATCTCCAAGAAAAAAAAAGTGTTTCTTCAGGTAGAGAAG  886

seq1  CCCAAATATGGAGATTTACAAGATTTTTGAATGCTATAACTACTCTAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATATGGAGATTTACAAGATTTTTGAATGCTATAACTACTCTAGAC  936

seq1  ACAACACTACCCAGATAATCACAGATAATATCAAAGTGATATTTTGGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTACCCAGATAATCACAGATAATATCAAAGTGATATTTTGGAGT  986

seq1  TTTATGTTGAAATACAGCTAAATGCCTTTCTTAGTTCTCTGGGATATCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTGAAATACAGCTAAATGCCTTTCTTAGTTCTCTGGGATATCTC  1036

seq1  AGTAAAATTTTGTGGATAAGATTAAGAATAAAAGGACAGAGAAGAAAAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATTTTGTGGATAAGATTAAGAATAAAAGGACAGAGAAGAAAAGG  1086

seq1  GAGAAAGAGGACAGGGTCAAAAAGCAGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGGACAGGGTCAAAAAGCAGAATTC  1118

seq1: chr1_45397380_45398473
seq2: B6Ng01-167M06.g_67_1134

seq1  GAATTCAATTCCTGGAACATTCCTTACCTTCATATTTATGTGTTTACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCTGGAACATTCCTTACCTTCATATTTATGTGTTTACAGA  50

seq1  GTTTTGTTTTAGTCTTGAACTAATTGGTTCATTGACATTTCACAGGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTAGTCTTGAACTAATTGGTTCATTGACATTTCACAGGGTAC  100

seq1  TGCTGGCTTTCCCGGTGGGCGTGGTCTTCCTGGTCCTCCTGGCAATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTTTCCCGGTGGGCGTGGTCTTCCTGGTCCTCCTGGCAATAATG  150

seq1  TAAGCTCTCTCCAGTTTTTTTTTTTTTTCAATATAACTTACAGAAAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTCTCCAGTTTTTTTTTTTTTTCAATATAACTTACAGAAAGACT  200

seq1  AGAATAAGAAAATATTTTGATACCTACCAAATTTGGCATCTACCAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGAAAATATTTTGATACCTACCAAATTTGGCATCTACCAAATCC  250

seq1  CACCTAAAATCTAAAATAAATAAAAGGCAAGGAAAGCAAAAAGACCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAAATCTAAAATAAATAAAAGGCAAGGAAAGCAAAAAGACCCTTT  300

seq1  TCTGCCATGTTAAAATTTAAATTATTTGCAGGGTAATCCAGGGCCCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATGTTAAAATTTAAATTATTTGCAGGGTAATCCAGGGCCCCCAG  350

seq1  GACCCAGTGGTGCTCCTGGCAAGGACGGCCCTCCAGGTCCTGCAGGCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTGGTGCTCCTGGCAAGGACGGCCCTCCAGGTCCTGCAGGCAAC  400

seq1  AGTGGTTCTCCTGGCAACCCTGGAATAGCTGGACCAAAAGGTGATGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTCTCCTGGCAACCCTGGAATAGCTGGACCAAAAGGTGATGCTGG  450

seq1  ACAGCCTGGAGAGAAGGGGCCACCTGGTGCTCAGGGTCCTCCGGTGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGAGAGAAGGGGCCACCTGGTGCTCAGGGTCCTCCGGTGAGAG  500

seq1  CTATTGCTGTTTTGTTGGTAGACTGCATATTCTGATAACAAACATAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTGTTTTGTTGGTAGACTGCATATTCTGATAACAAACATAATAA  550

seq1  GGGAGCTAGGATTCTGTAGCCATAGGCTGATTCTTTCGTATCTATTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTAGGATTCTGTAGCCATAGGCTGATTCTTTCGTATCTATTACAA  600

seq1  CAGGGTTCCCCAGGCCCACTTGGAATTGCAGGGCTAACTGGAGCACGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCCCCAGGCCCACTTGGAATTGCAGGGCTAACTGGAGCACGAGG  650

seq1  TCTTGCTGGACCACCAGGCATGCCAGGTCCACGGGGTAGCCCTGGACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGGACCACCAGGCATGCCAGGTCCACGGGGTAGCCCTGGACCTC  700

seq1  AGGGTATCAAGGTAAGCATAGTCACCTTGCATCTGATGTTTGCTTTACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATCAAGGTAAGCATAGTCACCTTGCATCTGATGTTTGCTTTACTA  750

seq1  CAGAGGTATAGAGATTTCTTCACTGTATCAGATATAAAAAGGTTTCTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTATAGAGATTTCTTCACTGTATCAGATATAAAAAGGTTTCTGAT  800

seq1  CAAGGTATAAATTATCAAAGATCTTACCTTCTTGACACTCTTAGGTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTATAAATTATCAAAGATCTTACCTTCTTGACACTCTTAGGTTTGC  850

seq1  AAAAACAAAACTTTCATTAAGTCTTCCCAGAACACACCGGCAAGGGACGT  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAC-AAACTTTCATTAAGTCTTCCCAGAACACACCGGCAAGGGACGT  899

seq1  AGTAAACAAGCTTTGCATATATACACAAGCAAGCCAACATCACAGAAAAA  950
      ||||||||||| |||||||||||||||||| |||| ||||||||||||| 
seq2  AGTAAACAAGC-TTGCATATATACACAAGC-AGCC-ACATCACAGAAAA-  945

seq1  CAATGTTGCTTTCTCAAACATCACTGTTAGGAAACTTGTGAGCATTCTTC  1000
        ||| ||||||||| ||||||||||||| ||||| ||||||||||| ||
seq2  -CATG-TGCTTTCTC-AACATCACTGTTA-GAAAC-TGTGAGCATTC-TC  989

seq1  AGTTGGTTCACTATAACTAGGAAGGGAGAAACTTTTTCATCTCATAAATG  1050
      |||    ||||||| |||||||  ||||||   |||||||||||| ||||
seq2  AGT---GTCACTAT-ACTAGGA--GGAGAA--CTTTTCATCTCAT-AATG  1030

seq1  TATGATACATTAATTGATGTAAATTACCCATCTCTTGAAGTCAA  1094
      ||||||||||    ||||||  || |||||||||||| ||||||
seq2  TATGATACAT---ATGATGT--ATAACCCATCTCTTG-AGTCAA  1068