BAC Information

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BAC

Clone NameB6Ng01-167N09
Chromosome1 (Build37)
Map Location 172,760,992 - 172,898,514
singlet/doubletdoublet
Overlap geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneFcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167N09.bB6Ng01-167N09.g
ACCDH959229DH959230
length956657
definitionDH959229|Mus musculus domesticus DNA, BAC clone: B6Ng01-167N09, 5' end.DH959230|Mus musculus domesticus DNA, BAC clone: B6Ng01-167N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,760,992 - 172,761,946)(172,897,858 - 172,898,514)
sequence
gaattctgttgtccacatgacaccctacctttcctaacagatagctcctt
tgtctaccttcagtcttctcttttaatgtactgaatcactacaatcctta
aacagtcttctatggcatggtctcttggggatgggacgggtactaaagat
tgaacctagggcctgtgcatgccaagcaagcactgtgctacggaccacat
ttccagccctcagtttttagaaacctttcccatcttttgttcctctggaa
ttctaaacacttgggatattataattgttaaaaaaaaatatgactatgtt
aatatttaacaactacaccatactatcattctacttaaagttctaaggta
atgtcaaatgttttctactgttagtttcattcgggaatatcacacacaca
aaaaatgccaaactcctaatttcaaaattattcagaagatatttgaaggg
atctttgaattgttggagaagcaaaggccacagctggaagccaggacagg
gaatccctgctagaggaataagttctgtttcctgagtcgggttttaagtt
aaattctgtgtgccctacctcttcctcttcaacacctttcctttcttaga
ccttaaacccaagccctgtgtacacagcagtcacccaatgcccttcctta
cccacttcatgtactccagaaagccagtcaggaagttaaaatgctacttt
tacactgcaaggaaggggacaaatccctgaacccttgtccctgacagccc
cacagtctcactccccttcagcactgaatctcctaaggggtctccccaga
aggaatggaactgaaagcctggtattagaaccagcgcctatcccctgtca
tgtggaacgactgccctggtataaacttgatcgcatccaccaaggtcaga
ggtcctagatagtttgggggatatacagacatgtacttggggtggggggt
ggggga
gaattcaatggaagaagcttcctgggcctggtcccacccttggtgctctc
agtaggaatgctggtgtctttttagcagaaacttggggcctgctgaggtt
cttggggcttccttgcctcacactgcctgctctctccaaaattgagcaga
tcttccaaaggctgtggtcaaactcgagcccccgtggatccaggtgctca
aggaagacacggtgacactgacatgcgaagggacccacaaccctgggaac
tcttctacccagtggttccacaatgggaggtccatccggagccaggtcca
agccagctacacgtttaaggccacagtcaatgacagtggagaatatcggt
gtcaaatggagcagacccgcctcagcgaccctgtagatctgggagtgatt
tctggttagtaaaggctggccctgggaggagatgggataccaagaagttg
ggggtggagtggggtggatctgcttactgcaaagtttgcaggaaatgggg
tgggctggtttctgggaagcatcccatggagctgcttcaagggccttttg
tccatccgtttccgcttttgccagcccttgtgctcagcctgcagtgtagt
ggcacacaaattcctgagaaactgtgtgaacagtttgttggggagtcctg
gttgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172760992_172761946
seq2: B6Ng01-167N09.b_45_1000

seq1  GAATTCTGTTGTCCACATGACACCCTACCTTTCCTAACAGATAGCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGTCCACATGACACCCTACCTTTCCTAACAGATAGCTCCTT  50

seq1  TGTCTACCTTCAGTCTTCTCTTTTAATGTACTGAATCACTACAATCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACCTTCAGTCTTCTCTTTTAATGTACTGAATCACTACAATCCTTA  100

seq1  AACAGTCTTCTATGGCATGGTCTCTTGGGGATGGGACGGGTACTAAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTTCTATGGCATGGTCTCTTGGGGATGGGACGGGTACTAAAGAT  150

seq1  TGAACCTAGGGCCTGTGCATGCCAAGCAAGCACTGTGCTACGGACCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTAGGGCCTGTGCATGCCAAGCAAGCACTGTGCTACGGACCACAT  200

seq1  TTCCAGCCCTCAGTTTTTAGAAACCTTTCCCATCTTTTGTTCCTCTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCCTCAGTTTTTAGAAACCTTTCCCATCTTTTGTTCCTCTGGAA  250

seq1  TTCTAAACACTTGGGATATTATAATTGTTAAAAAAAAATATGACTATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACACTTGGGATATTATAATTGTTAAAAAAAAATATGACTATGTT  300

seq1  AATATTTAACAACTACACCATACTATCATTCTACTTAAAGTTCTAAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAACAACTACACCATACTATCATTCTACTTAAAGTTCTAAGGTA  350

seq1  ATGTCAAATGTTTTCTACTGTTAGTTTCATTCGGGAATATCACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAATGTTTTCTACTGTTAGTTTCATTCGGGAATATCACACACACA  400

seq1  AAAAATGCCAAACTCCTAATTTCAAAATTATTCAGAAGATATTTGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCCAAACTCCTAATTTCAAAATTATTCAGAAGATATTTGAAGGG  450

seq1  ATCTTTGAATTGTTGGAGAAGCAAAGGCCACAGCTGGAAGCCAGGACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGAATTGTTGGAGAAGCAAAGGCCACAGCTGGAAGCCAGGACAGG  500

seq1  GAATCCCTGCTAGAGGAATAAGTTCTGTTTCCTGAGTCGGGTTTTAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCTGCTAGAGGAATAAGTTCTGTTTCCTGAGTCGGGTTTTAAGTT  550

seq1  AAATTCTGTGTGCCCTACCTCTTCCTCTTCAACACCTTTCCTTTCTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGTGTGCCCTACCTCTTCCTCTTCAACACCTTTCCTTTCTTAGA  600

seq1  CCTTAAACCCAAGCCCTGTGTACACAGCAGTCACCCAATGCCCTTCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACCCAAGCCCTGTGTACACAGCAGTCACCCAATGCCCTTCCTTA  650

seq1  CCCACTTCATGTACTCCAGAAAGCCAGTCAGGAAGTTAAAATGCTACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCATGTACTCCAGAAAGCCAGTCAGGAAGTTAAAATGCTACTTT  700

seq1  TACACTGCAAGGAAGGGGACAAATCCCTGAACCCTTGTCCCTGACAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGCAAGGAAGGGGACAAATCCCTGAACCCTTGTCCCTGACAGCCC  750

seq1  CACAGTCTCACTCCCCTTCAGCACTGAATCTCCTAAGGGGTCTCCCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTCACTCCCCTTCAGCACTGAATCTCCTAAGGGGTCTCCCCAGA  800

seq1  AGGAATGGAACTGAAAGCCTGGTATTAGAACCAGCGCCTATCCCCTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGAACTGAAAGCCTGGTATTAGAACCAGCGCCTATCCCCTGTCA  850

seq1  TGTGGAACGACTGCCCTGGTATAAACTTGATCGCATCCACCAAGGTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACGACTGCCCTGGTATAAACTTGATCGCATCCACCAAGGTCAGA  900

seq1  GGTCCTAGATAGTTTGGGGGATATACAGACATGTACTTGGGGT-GGGGGT  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTCCTAGATAGTTTGGGGGATATACAGACATGTACTTGGGGTGGGGGGT  950

seq1  GGGGGA  955
      ||||||
seq2  GGGGGA  956

seq1: chr1_172897858_172898514
seq2: B6Ng01-167N09.g_68_724 (reverse)

seq1  GCTCAACCAGGACTACCACAACAAACTGTTCACACAGTTTCTCAGGAATT  50
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  GCTCAACCAGGACT-CCCCAACAAACTGTTCACACAGTTTCTCAGGAATT  49

seq1  TGTGTGCC-CTCCACTGCAGGCTGAGCACAAGGGCTGGCAAAAGCGGAAA  99
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCACTACACTGCAGGCTGAGCACAAGGGCTGGCAAAAGCGGAAA  99

seq1  CGGGTGGACAAAAGGCCCTTGAAGCAGCTCCCTGGGATGCTTCCCAGAAA  149
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGGATGGACAAAAGGCCCTTGAAGCAGCTCCATGGGATGCTTCCCAGAAA  149

seq1  CCAGCCCACCCCATTTCCTGCAAACTTTGCAGTAAGCAGATCCACCCCAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCACCCCATTTCCTGCAAACTTTGCAGTAAGCAGATCCACCCCAC  199

seq1  TCCACCCCCAACTTCTTGGTATCCCATCTCCTCCCAGGGCCAGCCTTTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCCAACTTCTTGGTATCCCATCTCCTCCCAGGGCCAGCCTTTAC  249

seq1  TAACCAGAAATCACTCCCAGATCTACAGGGTCGCTGAGGCGGGTCTGCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGAAATCACTCCCAGATCTACAGGGTCGCTGAGGCGGGTCTGCTC  299

seq1  CATTTGACACCGATATTCTCCACTGTCATTGACTGTGGCCTTAAACGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGACACCGATATTCTCCACTGTCATTGACTGTGGCCTTAAACGTGT  349

seq1  AGCTGGCTTGGACCTGGCTCCGGATGGACCTCCCATTGTGGAACCACTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTTGGACCTGGCTCCGGATGGACCTCCCATTGTGGAACCACTGG  399

seq1  GTAGAAGAGTTCCCAGGGTTGTGGGTCCCTTCGCATGTCAGTGTCACCGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGAGTTCCCAGGGTTGTGGGTCCCTTCGCATGTCAGTGTCACCGT  449

seq1  GTCTTCCTTGAGCACCTGGATCCACGGGGGCTCGAGTTTGACCACAGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTTGAGCACCTGGATCCACGGGGGCTCGAGTTTGACCACAGCCT  499

seq1  TTGGAAGATCTGCTCAATTTTGGAGAGAGCAGGCAGTGTGAGGCAAGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGATCTGCTCAATTTTGGAGAGAGCAGGCAGTGTGAGGCAAGGAA  549

seq1  GCCCCAAGAACCTCAGCAGGCCCCAAGTTTCTGCTAAAAAGACACCAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAGAACCTCAGCAGGCCCCAAGTTTCTGCTAAAAAGACACCAGCA  599

seq1  TTCCTACTGAGAGCACCAAGGGTGGGACCAGGCCCAGGAAGCTTCTTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTGAGAGCACCAAGGGTGGGACCAGGCCCAGGAAGCTTCTTCCA  649

seq1  TTGAATTC  657
      ||||||||
seq2  TTGAATTC  657