BAC Information

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BAC

Clone NameB6Ng01-168C13
Chromosome1 (Build37)
Map Location 128,869,339 - 129,004,600
singlet/doubletdoublet
Overlap geneLOC383559
Upstream geneE030049G20Rik
Downstream geneMgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168C13.bB6Ng01-168C13.g
ACCDH959471DH959472
length1,1801,173
definitionDH959471|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C13, 5' end.DH959472|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,003,418 - 129,004,600)(128,869,339 - 128,870,518)
sequence
gaattcttgtctttctgccctcagcctccctttctctttctaccacatct
ctctactttctcttcctgactccttcaagagtgctccttaaagatgtttt
ctgagtactcaaatacaacagtttaaaatgcccgatggccagctttactt
cctcagaataaagtgaaaacccttctccaagtttctcatagtccatccaa
gcccctccttccagtcacatgccaatcagtcttcatcgatgcttgacact
ggtgcagagcttcccatgggacagttctagtcccatcctgttgccatgcc
actgggacctcagacagtgcagcgttgccagacagctggagcgctgcggg
gaaggagcttggctgtcttccagtagccctgccaggctcagagccctgag
cagaactcagctcatcctacatcaaagaacccattccattctccatcctg
gctcgtgtgtcttccttggcatgcccactggcagattcccctcttcctat
tcctctgtgtcccagcatgatcaaatcctacctgttttgggtttgctttt
atgtatttgtgtgtgtctgtgtttgtgtgtgtgtgcatgatgtatatgta
agcacacacatgccacggtgtgcatgtggaggtcagaggatggtttctta
gaaatggttctctctttccactgtgtggactctggggatcaaactcaggc
tgccagactagccatcaagcccatgtacccactgagccatctccctggac
tgcttgggtctttctaacagccactcattctttgtaaagtaatgaatatt
cccctgttgggggctccattataaacctagctatgcattgccttcctgat
gctgtccaccaaactcttccattagcctgacttttagcggaaatttctgc
ctcagtgtaccccattaggctgagcacagctttgctagtttacgtggaaa
ataatggatgtccacagtatgtggtctcactactgagagctttaaatttg
cttatgggaattcatattttcttttttctagtagacaatgaaatgcatcc
ggatggtggagaagtagagtcttgttgtggtttaacaaacgcagcatcag
agaaaagacaatggaaatgtgtgtggagcaaagggcaaatcctgatccaa
tcaatcttctctctggtatatcgcacagtc
gaattctgcactgtagccagtaagtggaaagtgtcctgtgagataatcac
atatacatttttcttataaaaatcaaacaggattcagctcaacagggtca
caaaacacactcaacgttgaaatcccctgaagaaaatataaagaagggac
aaccctcaaaaggaggtcacggttttgatgctcataaaattactggaagc
cttggagccttggtttgtttgtctgtaaaatgggaatactcatttgaggg
aatgtaaactgatacatgaaataagatttggctgtacctacattgagtaa
gaattccacccttgggagggatatctttcagaaagcaggcgtaaaggctg
taagactgcagtaaggccttccaaagcacagtcattaaaaagaaagtata
ggaaatgggagcaatgggttgctttaaaaatcaaaataaggaaaatacta
agcctcacaagtaaaagaaaggaatatggagacactattggcgcctgcag
taaagacagagattcctatatggggctggcaacagatgaatgaggcattc
cccgcggagaaaagtgcttagcagagctctaggcacaagaacagctgaga
gttggcatgtttgggatcctggggcgtaattaccttctattttttatgaa
acatcaataaactctgtgcattcagtaatctagcatgagcggtgcattgt
caaggagagggaaggcagctgacccactcaagcaggcaaacaaacaacct
ggatctttgaggaccaggcagaatccttgcatccctgagggccaggcagc
ctcctagcctcccttagagcttggcagcattctgataacttggttgcttc
ctgaacctagaagccatagcagagtctaacaataagctatagttacttta
taaggaccctaaaacagaacccatcatctcactgtcctagtcccaggctt
gtctctggaactgctgactggggccacctatagcacatgggagataaaaa
ttctcttatttggagtttcaaatggatattgagtttccaaggcctggatc
tgtggcaacctggatttcaatcatgctcgcttccaatagctgtggcttgg
tggtttgctgaaggtaatgtctcagaacatatcacccataatgatggagc
acagttggggtggcttaagtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129003418_129004600
seq2: B6Ng01-168C13.b_44_1223 (reverse)

seq1  GACTGTGCGTAATAGCAGAGAG-AGATTGGTATCTGGATCAAGATCTGCC  49
      |||||||||  ||| ||||||| |||||| |   ||||||| ||| ||||
seq2  GACTGTGCGATATACCAGAGAGAAGATTGAT---TGGATCAGGATTTGCC  47

seq1  CTTCTGCCTCCACACACATTTCCATTGTCCTTTCTTCTGATGCTGCGTTT  99
      ||| || |||||||||||||||||||||| |||| |||||||||||| ||
seq2  CTT-TG-CTCCACACACATTTCCATTGTCTTTTC-TCTGATGCTGCG-TT  93

seq1  TGTTAAA-CACAAC-AGACTCTACTTCTCCACCCATCCGGATGCATCTCA  147
      ||||||| |||||| |||||||||||||||| |||||||||||||| |||
seq2  TGTTAAACCACAACAAGACTCTACTTCTCCA-CCATCCGGATGCATTTCA  142

seq1  TTGTCTACTAGAAAAA--GAAATATGAATT-CCATAAGCAAATTTAAAGC  194
      ||||||||||||||||   ||||||||||| |||||||||||||||||||
seq2  TTGTCTACTAGAAAAAAGAAAATATGAATTCCCATAAGCAAATTTAAAGC  192

seq1  TCTCAGTAGTGAGACCACATACTGTGGACATCCATTATTTTCCACGTAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTAGTGAGACCACATACTGTGGACATCCATTATTTTCCACGTAAA  242

seq1  CTAGCAAAGCTGTGCTCAGCCTAATGGGGTACACTGAGGCAGAAAATTTC  294
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTAGCAAAGCTGTGCTCAGCCTAATGGGGTACACTGAGGCAG-AAATTTC  291

seq1  CGCTAAAAGTCAGGCTAATGGAAGAGTTTGGTGGACAGCATCAGGAAGGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAAAGTCAGGCTAATGGAAGAGTTTGGTGGACAGCATCAGGAAGGC  341

seq1  AATGCATAGCTAGGTTTATAATGGAGCCCCCAACAGGGGAATATTCATTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATAGCTAGGTTTATAATGGAGCCCCCAACAGGGGAATATTCATTA  391

seq1  CTTTACAAAGAATGAGTGGCTGTTAGAAAGACCCAAGCAGTCCAGGGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAAGAATGAGTGGCTGTTAGAAAGACCCAAGCAGTCCAGGGAGA  441

seq1  TGGCTCAGTGGGTACATGGGCTTGATGGCTAGTCTGGCAGCCTGAGTTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGTGGGTACATGGGCTTGATGGCTAGTCTGGCAGCCTGAGTTTG  491

seq1  ATCCCCAGAGTCCACACAGTGGAAAGAGAGAACCATTTCTAAGAAACCAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGAGTCCACACAGTGGAAAGAGAGAACCATTTCTAAGAAACCAT  541

seq1  CCTCTGACCTCCACATGCACACCGTGGCATGTGTGTGCTTACATATACAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACCTCCACATGCACACCGTGGCATGTGTGTGCTTACATATACAT  591

seq1  CATGCACACACACACAAACACAGACACACACAAATACATAAAAGCAAACC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACACACACACAAACACAGACACACACAAATACATAAAAGCAAACC  641

seq1  CAAAACAGGTAGGATTTGATCATGCTGGGACACAGAGGAATAGGAAGAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGGTAGGATTTGATCATGCTGGGACACAGAGGAATAGGAAGAGG  691

seq1  GGAATCTGCCAGTGGGCATGCCAAGGAAGACACACGAGCCAGGATGGAGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGCCAGTGGGCATGCCAAGGAAGACACACGAGCCAGGATGGAGA  741

seq1  ATGGAATGGGTTCTTTGATGTAGGATGAGCTGAGTTCTGCTCAGGGCTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGGGTTCTTTGATGTAGGATGAGCTGAGTTCTGCTCAGGGCTCT  791

seq1  GAGCCTGGCAGGGCTACTGGAAGACAGCCAAGCTCCTTCCCCGCAGCGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGCAGGGCTACTGGAAGACAGCCAAGCTCCTTCCCCGCAGCGCT  841

seq1  CCAGCTGTCTGGCAACGCTGCACTGTCTGAGGTCCCAGTGGCATGGCAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTCTGGCAACGCTGCACTGTCTGAGGTCCCAGTGGCATGGCAAC  891

seq1  AGGATGGGACTAGAACTGTCCCATGGGAAGCTCTGCACCAGTGTCAAGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGACTAGAACTGTCCCATGGGAAGCTCTGCACCAGTGTCAAGCA  941

seq1  TCGATGAAGACTGATTGGCATGTGACTGGAAGGAGGGGCTTGGATGGACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGAAGACTGATTGGCATGTGACTGGAAGGAGGGGCTTGGATGGACT  991

seq1  ATGAGAAACTTGGAGAAGGGTTTTCACTTTATTCTGAGGAAGTAAAGCTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAACTTGGAGAAGGGTTTTCACTTTATTCTGAGGAAGTAAAGCTG  1041

seq1  GCCATCGGGCATTTTAAACTGTTGTATTTGAGTACTCAGAAAACATCTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCGGGCATTTTAAACTGTTGTATTTGAGTACTCAGAAAACATCTTT  1091

seq1  AAGGAGCACTCTTGAAGGAGTCAGGAAGAGAAAGTAGAGAGATGTGGTAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCACTCTTGAAGGAGTCAGGAAGAGAAAGTAGAGAGATGTGGTAG  1141

seq1  AAAGAGAAAGGGAGGCTGAGGGCAGAAAGACAAGAATTC  1183
      |||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAGGGAGGCTGAGGGCAGAAAGACAAGAATTC  1180

seq1: chr1_128869339_128870518
seq2: B6Ng01-168C13.g_68_1240

seq1  GAATTCTGCACTGTAGCCAGTAAGTGGAAAGTGTCCTGTGAGATAATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTGTAGCCAGTAAGTGGAAAGTGTCCTGTGAGATAATCAC  50

seq1  ATATACATTTTTCTTATAAAAATCAAACAGGATTCAGCTCAACAGGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTTTTCTTATAAAAATCAAACAGGATTCAGCTCAACAGGGTCA  100

seq1  CAAAACACACTCAACGTTGAAATCCCCTGAAGAAAATATAAAGAAGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACACTCAACGTTGAAATCCCCTGAAGAAAATATAAAGAAGGGAC  150

seq1  AACCCTCAAAAGGAGGTCACGGTTTTGATGCTCATAAAATTACTGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCAAAAGGAGGTCACGGTTTTGATGCTCATAAAATTACTGGAAGC  200

seq1  CTTGGAGCCTTGGTTTGTTTGTCTGTAAAATGGGAATACTCATTTGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCCTTGGTTTGTTTGTCTGTAAAATGGGAATACTCATTTGAGGG  250

seq1  AATGTAAACTGATACATGAAATAAGATTTGGCTGTACCTACATTGAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAACTGATACATGAAATAAGATTTGGCTGTACCTACATTGAGTAA  300

seq1  GAATTCCACCCTTGGGAGGGATATCTTTCAGAAAGCAGGCGTAAAGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCTTGGGAGGGATATCTTTCAGAAAGCAGGCGTAAAGGCTG  350

seq1  TAAGACTGCAGTAAGGCCTTCCAAAGCACAGTCATTAAAAAGAAAGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGCAGTAAGGCCTTCCAAAGCACAGTCATTAAAAAGAAAGTATA  400

seq1  GGAAATGGGAGCAATGGGTTGCTTTAAAAATCAAAATAAGGAAAATACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGGAGCAATGGGTTGCTTTAAAAATCAAAATAAGGAAAATACTA  450

seq1  AGCCTCACAAGTAAAAGAAAGGAATATGGAGACACTATTGGCGCCTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCACAAGTAAAAGAAAGGAATATGGAGACACTATTGGCGCCTGCAG  500

seq1  TAAAGACAGAGATTCCTATATGGGGCTGGCAACAGATGAATGAGGCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAGAGATTCCTATATGGGGCTGGCAACAGATGAATGAGGCATTC  550

seq1  CCCGCGGAGAAAAGTGCTTAGCAGAGCTCTAGGCACAAGAACAGCTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCGGAGAAAAGTGCTTAGCAGAGCTCTAGGCACAAGAACAGCTGAGA  600

seq1  GTTGGCATGTTTGGGATCCTGGGGCGTAATTACCTTCTATTTTTTATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCATGTTTGGGATCCTGGGGCGTAATTACCTTCTATTTTTTATGAA  650

seq1  ACATCAATAAACTCTGTGCATTCAGTAATCTAGCATGAGCGGTGCATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATAAACTCTGTGCATTCAGTAATCTAGCATGAGCGGTGCATTGT  700

seq1  CAAGGAGAGGGAAGGCAGCTGACCCACTCAAGCAGGCAAACAAACAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGAGGGAAGGCAGCTGACCCACTCAAGCAGGCAAACAAACAACCT  750

seq1  GGATCTTTGAGGACCAGGCAGAATCCTTGCATCCCTGAGGGCCAGGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTGAGGACCAGGCAGAATCCTTGCATCCCTGAGGGCCAGGCAGC  800

seq1  CTCCTAGCCTCCCTTAGAGCTTGGCAGCATTCTGATAACTTGGTTGCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGCCTCCCTTAGAGCTTGGCAGCATTCTGATAACTTGGTTGCTTC  850

seq1  CTGAACCTAGAAGCCATAGCAGAGTCTAACAATAAGCTATAGTTACTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTAGAAGCCATAGCAGAGTCTAACAATAAGCTATAGTTACTTTA  900

seq1  TAAGGACCCTAAAACAGAACCCATCATCTCACTGTCCTAGTCCCAGGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACCCTAAAACAGAACCCATCATCTCACTGTCCTAGTCCCAGGCTT  950

seq1  GTCTCTGGAACTGCTGACTGGGCCCACCTATAGCACATGGGAGATATAAA  1000
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GTCTCTGGAACTGCTGACTGGGGCCACCTATAGCACATGGGAGATAAAAA  1000

seq1  TTCTCTTATTTGGAGTTTCAAATGGAATATTGAGTTTCCAAGGGCCTGGA  1050
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  TTCTCTTATTTGGAGTTTCAAATGG-ATATTGAGTTTCCAA-GGCCTGGA  1048

seq1  TCTGTGCAAACCTGGATTTCAATCATGCCTTCGCTTCCCATAGCCTGT-G  1099
      ||||||  ||||||||||||||||||||  |||||||| |||| |||| |
seq2  TCTGTGGCAACCTGGATTTCAATCATGC--TCGCTTCCAATAG-CTGTGG  1095

seq1  CTTGGTGGTTTTGCCTGAGAGGTAATGTCTCAGACTAT-TCACCCATAAT  1148
      |||||||||||   |||| |||||||||||||||  || |||||||||||
seq2  CTTGGTGGTTT--GCTGA-AGGTAATGTCTCAGAACATATCACCCATAAT  1142

seq1  GATTGAGCACACATTTGTGTTGCTTAAGTCTG  1180
      ||| |||||||  || | || |||||||||||
seq2  GATGGAGCACA-GTTGGGGTGGCTTAAGTCTG  1173