BAC Information

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BAC

Clone NameB6Ng01-168F15
Chromosome1 (Build37)
Map Location 15,986,849 - 16,148,471
singlet/doubletdoublet
Overlap geneLOC665434, 4930444P10Rik, Rpl7, Rdh10
Upstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
Downstream geneEG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168F15.bB6Ng01-168F15.g
ACCDH959612DH959613
length1,154872
definitionDH959612|Mus musculus domesticus DNA, BAC clone: B6Ng01-168F15, 5' end.DH959613|Mus musculus domesticus DNA, BAC clone: B6Ng01-168F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,147,312 - 16,148,471)(15,986,849 - 15,987,719)
sequence
gaattcagtccactgtgggcagggtcatccctaggctggtaggactgggc
tgcatagaaaatgtagctgagcatgatcggggacaaagcaagcgagcagc
actcctccatggctctacttctgttcccgcctccatactcttgtcttggc
tatgtttctgtcttggctcctcttgatgatataaaccaaatcaatcctcc
cttctcccaagctgctttgtggtcagacacagtatcagagaggtaaacta
ggaaaagacagtgacaagagctacttgagtggactctttctttgttcctt
gacataactttccgcactggcttacccactcccctcccaaagctgaagag
aggtaaaatacatgcttggtgtgagctagggtgatgacgtcagtgtcact
cttgagtgtgagctgctatgtgtgtaactgaacacgggcaccacgtgcct
tgaggctgatctggtaactgacaggaggggtgtacatgctggatgtgtgt
gctgggtcaaggggagattcgtgttcccggccagacaaagcgggataaaa
atgtagaacttctaattgcttcgggatgttttctttcaatgtgtcctact
gagattgacgacagagagtaccaaccattcagacaaggaaggctgctctg
aatattttcactcctcagattctttggggtatgtataagaatttctgggt
tctgtgataactcgacagcctgctctcagagggggaagctgcagcatttt
gcattcccaccagcaatactgagagtccccggctctccacactctgatgc
tatttattttctggagtttctgttggtttgggtttgacatagctgtgcag
agaagctagcattctccaaagacattcccctgtacagggcagtcttggat
acagctatcctatcaagcccacaggggttaccttttccttcttaggaagc
tttatttcttcattttgttcttctaaatcatgtgtacgagtctgtgtgga
tatgttccataaagtgcaggtgcctaaaggccagagttattggaccctct
agaactgaggttccagacagttggtgagccacagtggtgggtgctgggat
caaattcagtccctcaggagagcagtatttacttttagctgcttagcatc
tccc
gaattctggctagaatctgagtccatttttgctagttgattattattatt
attattaattttggctgttgttttgtttcccagtagttcagaaacaaatg
taattcctgaggaaagaaacctttggaaacagagaaaacacagctcataa
gcaaacaaacacaaaccggcagccaagctcccctgacattttgctcaggg
gcatttcacaacttggagaatgggtgttatttgtgatgcttttgacaaca
gttggcagaaactagaaccagactaggttacaataggggagtaaggaggc
acccgggggacccctcccaatattagaggaagaggagcgctctaaaactt
ggacttcaggaacagagaccatgcttcctcagacctcccctgctacctgg
gctgcgtgactttctatctctttgctcctgacttaattctgcagctccag
tagcttctgctaccacccgcttcccttcttctctgaataccggtgtcact
ggactacacacagagaccacattaagcaactcccctgttaagcgacctct
gctccccactgtcatggaagccaggctgaggacagctgcgctgggagtgg
atgggggtaggtattaacttggcaggattcttcagtttgcttgttcaggg
taggtgcccaggtctttatgacaaagtctaagattctgctacccaaaata
gaaaaactggagaaaatcttctaagacaaacaaatagctatgactttcta
taacaggttggagtttttgctttgttgttttgttttgcttaatttaaagc
aagtattgattgcattcaaatgggtagagttcaagagtgtgtgtgtgtgt
gttgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_16147312_16148471
seq2: B6Ng01-168F15.b_48_1201 (reverse)

seq1  GGGAGATGGCTTAGCAGCTAAGAGTAATTACTGCTCTCCTGAGGGACTTG  50
      ||||||| ||| ||||||||| ||||| ||||||||||||||||||| ||
seq2  GGGAGAT-GCTAAGCAGCTAAAAGTAAATACTGCTCTCCTGAGGGAC-TG  48

seq1  AATTTGAATCCCAGCACCCA-CACTGGTGGCTCA-CAACTGTCTGGAACT  98
      |||||| ||||||||||||| |||| |||||||| |||||||||||||| 
seq2  AATTTG-ATCCCAGCACCCACCACT-GTGGCTCACCAACTGTCTGGAACC  96

seq1  CCAGTTCTAGAGGGTCCAATACCTCTGGCCCTTTAGGCACCTGCACTTTA  148
       |||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  TCAGTTCTAGAGGGTCCAATAACTCTGG-CCTTTAGGCACCTGCACTTTA  145

seq1  TGTGAACATATCCACACAGACTCGTACACATGATTTAGAAGAACAAAAAT  198
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TG-GAACATATCCACACAGACTCGTACACATGATTTAGAAGAAC-AAAAT  193

seq1  GAAGAAATAAAGCTTTCCTAAGAAGGAAAAGGTAACCCCTGTGGGCTTGA  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATAAAGC-TTCCTAAGAAGGAAAAGGTAACCCCTGTGGGCTTGA  242

seq1  TAGGATAGCTGTATCCAAGACTGCCCTGTACAGGGGAATGTCTTTGGAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAGCTGTATCCAAGACTGCCCTGTACAGGGGAATGTCTTTGGAGA  292

seq1  ATGCTAGCTTCTCTGCACAGCTATGTCAAACCCAAACCAACAGAAACTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGCTTCTCTGCACAGCTATGTCAAACCCAAACCAACAGAAACTCC  342

seq1  AGAAAATAAATAGCATCAGAGTGTGGAGAGCCGGGGACTCTCAGTATTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAATAGCATCAGAGTGTGGAGAGCCGGGGACTCTCAGTATTGC  392

seq1  TGGTGGGAATGCAAAATGCTGCAGCTTCCCCCTCTGAGAGCAGGCTGTCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGAATGCAAAATGCTGCAGCTTCCCCCTCTGAGAGCAGGCTGTCG  442

seq1  AGTTATCACAGAACCCAGAAATTCTTATACATACCCCAAAGAATCTGAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCACAGAACCCAGAAATTCTTATACATACCCCAAAGAATCTGAGG  492

seq1  AGTGAAAATATTCAGAGCAGCCTTCCTTGTCTGAATGGTTGGTACTCTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAATATTCAGAGCAGCCTTCCTTGTCTGAATGGTTGGTACTCTCT  542

seq1  GTCGTCAATCTCAGTAGGACACATTGAAAGAAAACATCCCGAAGCAATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCAATCTCAGTAGGACACATTGAAAGAAAACATCCCGAAGCAATTA  592

seq1  GAAGTTCTACATTTTTATCCCGCTTTGTCTGGCCGGGAACACGAATCTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTACATTTTTATCCCGCTTTGTCTGGCCGGGAACACGAATCTCC  642

seq1  CCTTGACCCAGCACACACATCCAGCATGTACACCCCTCCTGTCAGTTACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACCCAGCACACACATCCAGCATGTACACCCCTCCTGTCAGTTACC  692

seq1  AGATCAGCCTCAAGGCACGTGGTGCCCGTGTTCAGTTACACACATAGCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGCCTCAAGGCACGTGGTGCCCGTGTTCAGTTACACACATAGCAG  742

seq1  CTCACACTCAAGAGTGACACTGACGTCATCACCCTAGCTCACACCAAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTCAAGAGTGACACTGACGTCATCACCCTAGCTCACACCAAGCA  792

seq1  TGTATTTTACCTCTCTTCAGCTTTGGGAGGGGAGTGGGTAAGCCAGTGCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTACCTCTCTTCAGCTTTGGGAGGGGAGTGGGTAAGCCAGTGCG  842

seq1  GAAAGTTATGTCAAGGAACAAAGAAAGAGTCCACTCAAGTAGCTCTTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTATGTCAAGGAACAAAGAAAGAGTCCACTCAAGTAGCTCTTGTC  892

seq1  ACTGTCTTTTCCTAGTTTACCTCTCTGATACTGTGTCTGACCACAAAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTTTCCTAGTTTACCTCTCTGATACTGTGTCTGACCACAAAGCA  942

seq1  GCTTGGGAGAAGGGAGGATTGATTTGGTTTATATCATCAAGAGGAGCCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGAGAAGGGAGGATTGATTTGGTTTATATCATCAAGAGGAGCCAA  992

seq1  GACAGAAACATAGCCAAGACAAGAGTATGGAGGCGGGAACAGAAGTAGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAACATAGCCAAGACAAGAGTATGGAGGCGGGAACAGAAGTAGAG  1042

seq1  CCATGGAGGAGTGCTGCTCGCTTGCTTTGTCCCCGATCATGCTCAGCTAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGGAGTGCTGCTCGCTTGCTTTGTCCCCGATCATGCTCAGCTAC  1092

seq1  ATTTTCTATGCAGCCCAGTCCTACCAGCCTAGGGATGACCCTGCCCACAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTATGCAGCCCAGTCCTACCAGCCTAGGGATGACCCTGCCCACAG  1142

seq1  TGGACTGAATTC  1160
      ||||||||||||
seq2  TGGACTGAATTC  1154

seq1: chr1_15986849_15987719
seq2: B6Ng01-168F15.g_69_940

seq1  GAATTCTGGCTAGAATCTGAGTCCATTTTTGCTAGTTGATTATTATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTAGAATCTGAGTCCATTTTTGCTAGTTGATTATTATTATT  50

seq1  ATTATTAATTTTGGCTGTTGTTTTGTTTCCCAGTAGTTCAGAAACAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAATTTTGGCTGTTGTTTTGTTTCCCAGTAGTTCAGAAACAAATG  100

seq1  TAATTCCTGAGGAAAGAAACCTTTGGAAACAGAGAAAACACAGCTCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTGAGGAAAGAAACCTTTGGAAACAGAGAAAACACAGCTCATAA  150

seq1  GCAAACAAACACAAACCGGCAGCCAAGCTCCCCTGACATTTTGCTCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAACACAAACCGGCAGCCAAGCTCCCCTGACATTTTGCTCAGGG  200

seq1  GCATTTCACAACTTGGAGAATGGGTGTTATTTGTGATGCTTTTGACAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCACAACTTGGAGAATGGGTGTTATTTGTGATGCTTTTGACAACA  250

seq1  GTTGGCAGAAACTAGAACCAGACTAGGTTACAATAGGGGAGTAAGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGAAACTAGAACCAGACTAGGTTACAATAGGGGAGTAAGGAGGC  300

seq1  ACCCGGGGGACCCCTCCCAATATTAGAGGAAGAGGAGCGCTCTAAAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGGGGACCCCTCCCAATATTAGAGGAAGAGGAGCGCTCTAAAACTT  350

seq1  GGACTTCAGGAACAGAGACCATGCTTCCTCAGACCTCCCCTGCTACCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCAGGAACAGAGACCATGCTTCCTCAGACCTCCCCTGCTACCTGG  400

seq1  GCTGCGTGACTTTCTATCTCTTTGCTCCTGACTTAATTCTGCAGCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGTGACTTTCTATCTCTTTGCTCCTGACTTAATTCTGCAGCTCCAG  450

seq1  TAGCTTCTGCTACCACCCGCTTCCCTTCTTCTCTGAATACCGGTGTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTGCTACCACCCGCTTCCCTTCTTCTCTGAATACCGGTGTCACT  500

seq1  GGACTACACACAGAGACCACATTAAGCAACTCCCCTGTTAAGCGACCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACACACAGAGACCACATTAAGCAACTCCCCTGTTAAGCGACCTCT  550

seq1  GCTCCCCACTGTCATGGAAGCCAGGCTGAGGACAGCTGCGCTGGGAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCACTGTCATGGAAGCCAGGCTGAGGACAGCTGCGCTGGGAGTGG  600

seq1  ATGGGGGTAGGTATTAACTTGGCAGGATTCTTCAGTTTGCTTGTTCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGTAGGTATTAACTTGGCAGGATTCTTCAGTTTGCTTGTTCAGGG  650

seq1  TAGGTGCCCAGGTCTTTATGACAAAGTCTAAGATTCTGCTACCCAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCCCAGGTCTTTATGACAAAGTCTAAGATTCTGCTACCCAAAATA  700

seq1  GAAAAACTGGAGAAAATCTTCTAAGACAAACAAATAGCTATGACTTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTGGAGAAAATCTTCTAAGACAAACAAATAGCTATGACTTTCTA  750

seq1  TAACAGGTTGGAGTTTTTGCTTTGTTGTTTTGTTTTGCTTAA-TTAAAGC  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAACAGGTTGGAGTTTTTGCTTTGTTGTTTTGTTTTGCTTAATTTAAAGC  800

seq1  AAGTATTGATTGCATTCAAAT-GGTAGAGTTCAAGAGTGTGTGTGTGTGT  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGTATTGATTGCATTCAAATGGGTAGAGTTCAAGAGTGTGTGTGTGTGT  850

seq1  GTGTGTGTGTGTGTGTGTGTGTG  871
      || ||||||||||||||||||||
seq2  GT-TGTGTGTGTGTGTGTGTGTG  872