BAC Information

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BAC

Clone NameB6Ng01-168G19
Chromosome1 (Build37)
Map Location 10,861,016 - 11,025,493
singlet/doubletdoublet
Overlap genenone
Upstream geneSgk3, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168G19.bB6Ng01-168G19.g
ACCDH959665DH959666
length1,1431,121
definitionDH959665|Mus musculus domesticus DNA, BAC clone: B6Ng01-168G19, 5' end.DH959666|Mus musculus domesticus DNA, BAC clone: B6Ng01-168G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,861,016 - 10,862,161)(11,024,365 - 11,025,493)
sequence
gaattccaagcccaaggtcttgctaaggacgaactaggactgttggaaca
ctggtggacggctttagctatgtcagaattcaatcttaaaaggcacttat
gataggaaaatattgaaagagagcacgtggatccatacactagactaacg
tgggaatggaacacgggaatgaaaaattactgtatgggtagggaacgcta
gactccaggaggagagcttccttgaaactcttttgcctcatgagtgactt
ttaagcctctcggcttgtccagttgactcaaccagagagcgtagcactta
aataaactttattcaacttatacttttattttatatattttttctgcatc
tattcctgcagaggcaagagagattcactagaattggaatttcagaagtc
tgcgagccaccatgtgggtgctagaaattggacttggctcctctgccaca
gcaacaagtactttaaatggctgagcaatctctctttagtccatggatga
ctgttcttgattgtttgctcatggcagctttctcttgcagaagaattcca
atagataaataaagatgaaagaaaagaaagattattgctaggtaaatacc
acaagaaagcaacagaagatacaatgataactattaaatttccaagcaag
agctagcagaaagatgttgctgggccggtgccagcagcactatgcctgcc
agtacaattttcagagtctgttgactgcaatcttgctgattggatgtatg
tgtgcatatatctgatccttggcacgagagtcctggacaaaaataaaact
gcactacttggaatattttggaatatttggaagtgtgcctaaattggtga
acacaagagtccttattttgccatatggcatatagtgatggccttcacat
ccccttcatgaaacagctttgaaaactgctaatgcgtgattgctattaga
ttcggttaataagatcttgcctccagaaaataatgggaaggatggttggc
cctttcatctcagaacatggaatgagataaatttcgagacacccttcttc
taattttatgctattggacaatgactatattataaattaagtacaattta
atgcataggatttgtagtgatcaactcatttctgtcacttcag
gaattctaactaattttgaaaaagaaggatttggaggacactggcccatg
ctgtctctcagtaattgctgggtggagctctgtcaccagcacagggaagg
cagagaagtgacccaagcatgtacaagagagcgactccataacaagactt
cttcagtccacactccagctgtgctacctcccgaggcaggctgtactcca
agctagttcccattcatacgagagagaataacggtgctaccttctgggaa
cacaataggagttaaaatagtttaataaacaacgtacctcatgctatccc
ttgaaaaccacagcattttcctctgtatgacctggcagcccaaaacagat
ggtggaaaacctgttccaagttaggcttctgttgccgtaatgaaacagtg
accaaaccaacataggggagaaaggatttgtttcaccttacactttattg
ccctttcctaggaagccagaaaagcagctcaagaatccggaggcaggaat
taactaaatcattaatcaaattaatcaaatctctaatcaaaaaaactaac
ccagagatatgcccacaggccaatcttgatgaaggcatttcctcaactga
gatgctgacttcccagctataatatgtaggtaagtgcccagttgacaaaa
cctacagtcacctttcccccaatttccctgcctcacaccaaacgaaacat
tatgaatatgaactttttccctcaaaactttttgccaaccagatgaaatt
aaccttgatctttcatctgccaagtgatatctggcctgaagtctgtcttc
ctgaattacatggctttcctacccacaaaggttctgaaagacctctgcca
gaactgggttgccctgctcgatatccacatggtcctaattatcagtatta
taggaaacaccacccttgggaaggcagctctgtgggtaacaactgcttga
aagcatggatgaagcgtccttacacagataaaacatccgttccaaaggac
actcagagaacagatcggaacaccttaaatcatcttcaaccaaaacctcg
tttgtcgttcaaggaagagatcactgctataaattcatggctgccctcta
acctaactaatttgaatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_10861016_10862161
seq2: B6Ng01-168G19.b_44_1186

seq1  GAATTCCAAGCCCAAGGTCTTGCTAAGGACGAACTAGGACTGTTGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAAGGTCTTGCTAAGGACGAACTAGGACTGTTGGAACA  50

seq1  CTGGTGGACGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGACGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTAT  100

seq1  GATAGGAAAATATTGAAAGAGAGCACGTGGATCCATACACTAGACTAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAAAATATTGAAAGAGAGCACGTGGATCCATACACTAGACTAACG  150

seq1  TGGGAATGGAACACGGGAATGAAAAATTACTGTATGGGTAGGGAACGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGGAACACGGGAATGAAAAATTACTGTATGGGTAGGGAACGCTA  200

seq1  GACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTT  250

seq1  TTAAGCCTCTCGGCTTGTCCAGTTGACTCAACCAGAGAGCGTAGCACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCTCTCGGCTTGTCCAGTTGACTCAACCAGAGAGCGTAGCACTTA  300

seq1  AATAAACTTTATTCAACTTATACTTTTATTTTATATATTTTTTCTGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTTTATTCAACTTATACTTTTATTTTATATATTTTTTCTGCATC  350

seq1  TATTCCTGCAGAGGCAAGAGAGATTCACTAGAATTGGAATTTCAGAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGCAGAGGCAAGAGAGATTCACTAGAATTGGAATTTCAGAAGTC  400

seq1  TGCGAGCCACCATGTGGGTGCTAGAAATTGGACTTGGCTCCTCTGCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGCCACCATGTGGGTGCTAGAAATTGGACTTGGCTCCTCTGCCACA  450

seq1  GCAACAAGTACTTTAAATGGCTGAGCAATCTCTCTTTAGTCCATGGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAGTACTTTAAATGGCTGAGCAATCTCTCTTTAGTCCATGGATGA  500

seq1  CTGTTCTTGATTGTTTGCTCATGGCAGCTTTCTCTTGCAGAAGAATTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTGATTGTTTGCTCATGGCAGCTTTCTCTTGCAGAAGAATTCCA  550

seq1  ATAGATAAATAAAGATGAAAGAAAAGAAAGATTATTGCTAGGTAAATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAATAAAGATGAAAGAAAAGAAAGATTATTGCTAGGTAAATACC  600

seq1  ACAAGAAAGCAACAGAAGATACAATGATAACTATTAAATTTCCAAGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAGCAACAGAAGATACAATGATAACTATTAAATTTCCAAGCAAG  650

seq1  AGCTAGCAGAAAGATGTTGCTGGGCCGGTGCCAGCAGCACTATGCCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCAGAAAGATGTTGCTGGGCCGGTGCCAGCAGCACTATGCCTGCC  700

seq1  AGTACAATTTTCAGAGTCTGTTGACTGCAATCTTGCTGATTGGATGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATTTTCAGAGTCTGTTGACTGCAATCTTGCTGATTGGATGTATG  750

seq1  TGTGCATATATCTGATCCTTGGCACGAGAGTCCTGGACAAAAATAAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATATATCTGATCCTTGGCACGAGAGTCCTGGACAAAAATAAAACT  800

seq1  GCACTACTTGGAATATTTTGGAATATTTGGAAGTGTGCCTAAATTGGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACTTGGAATATTTTGGAATATTTGGAAGTGTGCCTAAATTGGTGA  850

seq1  ACACAAGAGTCCTTATTTTGCCATATGGCATATAGTGATGGCCTTCACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAGTCCTTATTTTGCCATATGGCATATAGTGATGGCCTTCACAT  900

seq1  CCCCTTCATGAAACAGCTTTGAAAACTGCTAATGCGTGATTGCTATTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCATGAAACAGCTTTGAAAACTGCTAATGCGTGATTGCTATTAGA  950

seq1  TTCGGTTAATAAGATCTTGCCTCCAGAAAATAATGGGAAGGATGGTTGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTTAATAAGATCTTGCCTCCAGAAAATAATGGGAAGGATGGTTGGC  1000

seq1  CCTTTCATCTCAGAACATGGAATGAGATAAATTTCGAGACACCCTTC-TC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTTTCATCTCAGAACATGGAATGAGATAAATTTCGAGACACCCTTCTTC  1050

seq1  TAATTTTATGCTATTGGACCAATGAACTATA-TATAAATTAAGTAACAAT  1098
      |||||||||||||||||| ||||| |||||| |||||||||||| |||||
seq2  TAATTTTATGCTATTGGA-CAATG-ACTATATTATAAATTAAGT-ACAAT  1097

seq1  TTAATGCATAGGAATTTGTAGTGATCAAACTCATTTCTGTCACTTCAG  1146
      |||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  TTAATGCATAGG-ATTTGTAGTGATC-AACTCATTTCTGTCACTTCAG  1143

seq1: chr1_11024365_11025493
seq2: B6Ng01-168G19.g_70_1190 (reverse)

seq1  TAAAATATCAAAATTTTAGTTAGAGGTTAGAGGGCAGCCAAAAGGAATTT  50
      |||||| |||||   ||||||  ||||||||||||||||   | ||||||
seq2  TAAAAT-TCAAA---TTAGTT--AGGTTAGAGGGCAGCC---ATGAATTT  41

seq1  ATGACAGTGATTCTCTTCTCTGGACGACCAAACAGAGTTTTTGGTTTGAG  100
      ||  |||||| |||||||  || |||| ||||| ||| |||||| |||| 
seq2  ATAGCAGTGA-TCTCTTCCTTGAACGA-CAAAC-GAGGTTTTGG-TTGAA  87

seq1  AATGATTTTAGGGTGTTCCGTTCTGTTCTTCTGGGTGGTCCTTTGGAACG  150
       |||| |||| ||||||||| ||||||| |||| || |||||||||||||
seq2  GATGA-TTTAAGGTGTTCCGATCTGTTC-TCTGAGT-GTCCTTTGGAACG  134

seq1  GTTGTTTTATCTGTGTAGGAACGCTTCATCCATGCTTTCAAGCAG-TGGT  199
      | ||||||||||||||| | ||||||||||||||||||||||||| || |
seq2  GATGTTTTATCTGTGTAAGGACGCTTCATCCATGCTTTCAAGCAGTTGTT  184

seq1  ACCCACCAGAGCTGCCTTCCC-AGGGTGGTG-TTCCTATAATACTG-TTA  246
      ||||| ||||||||||||||| ||||||||| |||||||||||||| | |
seq2  ACCCA-CAGAGCTGCCTTCCCAAGGGTGGTGTTTCCTATAATACTGATAA  233

seq1  TTAGGACCATGTGG-TTTCGAGCAGGGC-ACCCAGTTCTGGCAGAGGTCT  294
      |||||||||||||| | ||||||||||| |||||||||||||||||||||
seq2  TTAGGACCATGTGGATATCGAGCAGGGCAACCCAGTTCTGGCAGAGGTCT  283

seq1  TTCAGAACCTTTGTGGGTAGG-AAGCCATGTAATTCAGG-AGACAGACTT  342
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TTCAGAACCTTTGTGGGTAGGAAAGCCATGTAATTCAGGAAGACAGACTT  333

seq1  CAGGCCAGATATCACTTGGCAGATGAAAGATCAAGGTTAATTTCATCTGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGATATCACTTGGCAGATGAAAGATCAAGGTTAATTTCATCTGG  383

seq1  TTGGCAAAAAGTTTTGAGGG-AAAAGTTCATATTCATAATGTTTCGTTTG  441
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGGCAAAAAGTTTTGAGGGAAAAAGTTCATATTCATAATGTTTCGTTTG  433

seq1  GTGTGAGGCAGGGAAATTGGGGGAAAGGTGACTGTAGGTTTTGTCAACTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGCAGGGAAATTGGGGGAAAGGTGACTGTAGGTTTTGTCAACTG  483

seq1  GGCACTTACCTACATATTATAGCTGGGAAGTCAGCATCTCAGTTGAGGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTACCTACATATTATAGCTGGGAAGTCAGCATCTCAGTTGAGGAA  533

seq1  ATGCCTTCATCAAGATTGGCCTGTGGGCATATCTCTGGGTTAGTTTTTTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCATCAAGATTGGCCTGTGGGCATATCTCTGGGTTAGTTTTTTT  583

seq1  GATTAGAGATTTGATTAATTTGATTAATGATTTAGTTAATTCCTGCCTCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGATTTGATTAATTTGATTAATGATTTAGTTAATTCCTGCCTCC  633

seq1  GGATTCTTGAGCTGCTTTTCTGGCTTCCTAGGAAAGGGCAATAAAGTGTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTGAGCTGCTTTTCTGGCTTCCTAGGAAAGGGCAATAAAGTGTA  683

seq1  AGGTGAAACAAATCCTTTCTCCCCTATGTTGGTTTGGTCACTGTTTCATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAACAAATCCTTTCTCCCCTATGTTGGTTTGGTCACTGTTTCATT  733

seq1  ACGGCAACAGAAGCCTAACTTGGAACAGGTTTTCCACCATCTGTTTTGGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAACAGAAGCCTAACTTGGAACAGGTTTTCCACCATCTGTTTTGGG  783

seq1  CTGCCAGGTCATACAGAGGAAAATGCTGTGGTTTTCAAGGGATAGCATGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGTCATACAGAGGAAAATGCTGTGGTTTTCAAGGGATAGCATGA  833

seq1  GGTACGTTGTTTATTAAACTATTTTAACTCCTATTGTGTTCCCAGAAGGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACGTTGTTTATTAAACTATTTTAACTCCTATTGTGTTCCCAGAAGGT  883

seq1  AGCACCGTTATTCTCTCTCGTATGAATGGGAACTAGCTTGGAGTACAGCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGTTATTCTCTCTCGTATGAATGGGAACTAGCTTGGAGTACAGCC  933

seq1  TGCCTCGGGAGGTAGCACAGCTGGAGTGTGGACTGAAGAAGTCTTGTTAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCGGGAGGTAGCACAGCTGGAGTGTGGACTGAAGAAGTCTTGTTAT  983

seq1  GGAGTCGCTCTCTTGTACATGCTTGGGTCACTTCTCTGCCTTCCCTGTGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCGCTCTCTTGTACATGCTTGGGTCACTTCTCTGCCTTCCCTGTGC  1033

seq1  TGGTGACAGAGCTCCACCCAGCAATTACTGAGAGACAGCATGGGCCAGTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACAGAGCTCCACCCAGCAATTACTGAGAGACAGCATGGGCCAGTG  1083

seq1  TCCTCCAAATCCTTCTTTTTCAAAATTAGTTAGAATTC  1129
      ||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAATCCTTCTTTTTCAAAATTAGTTAGAATTC  1121