MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-168L16
Chromosome	1 (Build37)
Map Location	53,462,317 - 53,463,175
singlet/doublet	singlet
Overlap gene	LOC100042162
Upstream gene	Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866
Downstream gene	Dnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3
Link	Open Mouse BAC browser

Click to get alignment info.

name	Nab1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17936 MGI:107564
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546736 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546736
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins pseudo : _no_value

name	Gm553 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227091 MGI:2685399
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100042094 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042094
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins pseudo : _no_value

name	EG433305 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433305 MGI:3646585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 180 ESTs, 22 Proteins pseudo : _no_value

name	5330401P04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227094 MGI:2444113
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2210010L05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98682 MGI:1922925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Inpp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16329 MGI:104848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hibch (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227095 MGI:1923792
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700019D03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67080 MGI:1914330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gdf8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17700 MGI:95691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700019A02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69397 MGI:1916647
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 Protein

name	Pms1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227099 MGI:1202302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC671024 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671024
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs

name	Ormdl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227102 MGI:2181669
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Osgepl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72085 MGI:1919335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asnsd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70396 MGI:1917646
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG627858 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627858 MGI:3646265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	EG627866 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627866 MGI:3643101
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins

name	LOC100042162 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042162
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 72 ESTs, 14 Proteins

name	Dnahc7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627872 MGI:2685838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Stk17b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98267 MGI:2138162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hecw2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329152 MGI:2685817
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	4930511H11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78016 MGI:1925266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gtf3c3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98488 MGI:2138383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543306 GeneID:17936 MGI:107564
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Ngfi-A binding protein 1 transcript_id : NM_008667.2

name	Gm553 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363371 GeneID:227091 MGI:2685399
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : gene model 553, (NCBI) transcript_id : XM_149023.5

name	5330401P04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368519 GeneID:227094 MGI:2444113
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5330401P04 gene transcript_id : NM_172654.2

name	2210010L05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527045 GeneID:98682 MGI:1922925
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2210010L05 gene transcript_id : NM_133829.1

name	2210010L05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802942 GeneID:98682 MGI:1922925
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2210010L05 gene transcript_id : NM_178081.3

name	Inpp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680456 GeneID:16329 MGI:104848
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inositol polyphosphate-1-phosphatase transcript_id : NM_008384.1

name	Hibch (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122624 GeneID:227095 MGI:1923792
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 3-hydroxyisobutyryl-Coenzyme A hydrolase transcript_id : NM_146108.1

name	1700019D03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367422 GeneID:67080 MGI:1914330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700019D03 gene transcript_id : NM_144953.2

name	Gdf8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130172 GeneID:17700 MGI:95691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth differentiation factor 8 transcript_id : NM_010834.2

name	1700019A02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363375 GeneID:69397 MGI:1916647
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 Protein product : RIKEN cDNA 1700019A02 gene transcript_id : XM_892538.2

name	Pms1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956335 GeneID:227099 MGI:1202302
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : postmeiotic segregation increased 1 (S. cerevisiae) transcript_id : NM_153556.1

name	LOC671024 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233834 GeneID:671024
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs product : hypothetical LOC671024 transcript_id : XM_001477620.1

name	Ormdl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803365 GeneID:227102 MGI:2181669
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ORM1-like 1 (S. cerevisiae) transcript_id : NM_145517.3

name	Osgepl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803430 GeneID:72085 MGI:1919335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : O-sialoglycoprotein endopeptidase-like 1 transcript_id : NM_028091.3

name	Asnsd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981566 GeneID:70396 MGI:1917646
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparagine synthetase domain containing 1 transcript_id : NM_133728.2

name	EG627866 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233836 GeneID:627866 MGI:3643101
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins product : predicted gene, EG627866 transcript_id : XM_892576.3

name	LOC100042162 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233838 GeneID:100042162
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 72 ESTs, 14 Proteins product : similar to KIAA0944 protein transcript_id : XM_001477662.1

name	Dnahc7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363388 GeneID:627872 MGI:2685838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : dynein, axonemal, heavy chain 7 transcript_id : XM_355197.5

name	Stk17b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31559987 GeneID:98267 MGI:2138162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine/threonine kinase 17b (apoptosis-inducing) transcript_id : NM_133810.2

name	Hecw2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131081 GeneID:329152 MGI:2685817
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 transcript_id : NM_001001883.2

name	Hecw2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27369943 GeneID:329152 MGI:2685817
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 transcript_id : NM_172655.1

name	4930511H11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037516 GeneID:78016 MGI:1925266
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930511H11 gene transcript_id : NM_030025.1

name	Gtf3c3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802741 GeneID:98488 MGI:2138383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor IIIC, polypeptide 3 transcript_id : NM_001033194.2

name	Nab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543307 CCDS:CCDS14944.1 GeneID:17936 MGI:107564
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0030528 - transcription regulator activity [Evidence IGI]; GO:0016564 - transcriptional repressor activity [Evidence IEA] GO_process : GO:0001958 - endochondral ossification [Evidence IGI]; GO:0042552 - myelination [Evidence IGI]; GO:0016481 - negative regulation of transcription [Evidence IEA]; GO:0045682 - regulation of epidermis development [Evidence IGI]; GO:0045449 - regulation of transcription [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0014037 - Schwann cell differentiation [Evidence IGI]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : Ngfi-A binding protein 1 protein_id : NP_032693.2

name	Gm553 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20846679 GeneID:227091 MGI:2685399
definition	codon_start : 1 product : hypothetical protein protein_id : XP_149023.1

name	5330401P04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369934 GeneID:227094 MGI:2444113
definition	codon_start : 1 product : hypothetical protein LOC227094 protein_id : NP_766242.1

name	2210010L05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527046 CCDS:CCDS14945.1 GeneID:98682 MGI:1922925
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; macrophage MHC receptor 2 product : hypothetical protein LOC98682 isoform 1 protein_id : NP_598590.1

name	2210010L05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017395 CCDS:CCDS14946.1 GeneID:98682 MGI:1922925
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2; macrophage MHC receptor 2 product : hypothetical protein LOC98682 isoform 2 protein_id : NP_835182.1

name	Inpp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680457 CCDS:CCDS14947.1 GeneID:16329 MGI:104848
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004437 - inositol or phosphatidylinositol phosphatase activity [Evidence IEA]; GO:0004441 - inositol-1,4-bisphosphate 1-phosphatase activity [Evidence IEA]; GO:0031403 - lithium ion binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : inositol polyphosphate-1-phosphatase protein_id : NP_032410.1

name	Hibch (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122625 CCDS:CCDS14948.1 GeneID:227095 MGI:1923792
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 note : HIBYL-COA-H product : 3-hydroxyisobutyryl-Coenzyme A hydrolase protein_id : NP_666220.1

name	1700019D03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450635 CCDS:CCDS14949.1 GeneID:67080 MGI:1914330
definition	codon_start : 1 product : hypothetical protein LOC67080 protein_id : NP_659202.1

name	Gdf8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754752 CCDS:CCDS14950.1 GeneID:17700 MGI:95691
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005102 - receptor binding [Evidence IPI] GO_process : GO:0040007 - growth [Evidence IEA]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence IDA] codon_start : 1 note : myostatin product : growth differentiation factor 8 protein_id : NP_034964.1

name	1700019A02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82879250 GeneID:69397 MGI:1916647
definition	codon_start : 1 product : hypothetical protein LOC69397 protein_id : XP_897631.1

name	Pms1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956336 CCDS:CCDS14951.1 GeneID:227099 MGI:1202302
definition	GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : postmeiotic segregation increased 1 protein_id : NP_705784.1

name	LOC671024 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233835 GeneID:671024
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477670.1

name	Ormdl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981801 CCDS:CCDS14952.1 GeneID:227102 MGI:2181669
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ORM1-like 1 protein_id : NP_663492.2

name	Osgepl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560081 CCDS:CCDS14953.1 GeneID:72085 MGI:1919335
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 product : O-sialoglycoprotein endopeptidase-like 1 protein_id : NP_082367.2

name	Asnsd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981567 CCDS:CCDS14954.1 GeneID:70396 MGI:1917646
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : asparagine synthetase domain containing 1 protein_id : NP_598489.2

name	EG627866 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149233837 GeneID:627866 MGI:3643101
definition	codon_start : 1 product : hypothetical protein protein_id : XP_897669.3

name	LOC100042162 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233839 GeneID:100042162
definition	codon_start : 1 product : similar to KIAA0944 protein protein_id : XP_001477712.1

name	Dnahc7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82879258 GeneID:627872 MGI:2685838
definition	codon_start : 1 product : similar to dynein, axonemal, heavy polypeptide 7 protein_id : XP_355197.4

name	Stk17b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559988 CCDS:CCDS14955.1 GeneID:98267 MGI:2138162
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence ISS] [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence ISS]; GO:0007243 - protein kinase cascade [Evidence ISS] codon_start : 1 product : serine/threonine kinase 17b (apoptosis-inducing) protein_id : NP_598571.2

name	Hecw2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49457861 CCDS:CCDS14956.1 GeneID:329152 MGI:2685817
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; NEDD4-related E3 ubiquitin ligase NEDL2; HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2, isoform 2 product : HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 isoform 1 protein_id : NP_001001883.1

name	Hecw2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369944 CCDS:CCDS14957.1 GeneID:329152 MGI:2685817
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; NEDD4-related E3 ubiquitin ligase NEDL2; HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2, isoform 2 product : HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 isoform 2 protein_id : NP_766243.1

name	4930511H11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037517 GeneID:78016 MGI:1925266
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC78016 protein_id : NP_084301.1

name	Gtf3c3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677510 CCDS:CCDS14958.1 GeneID:98488 MGI:2138383
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 note : transcription factor IIIC-gamma subunit; TFIIIC 102 kDa subunit product : general transcription factor 3C polypeptide 3 protein_id : NP_001028366.1

name	EG627858 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:627858
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:128518
definition	standard_name : D1Mit18

name	(CDS detail)
type	STS
link
xref	UniSTS:125755
definition	standard_name : U47008

name	(CDS detail)
type	STS
link
xref	UniSTS:267360
definition	standard_name : MARC_12193-12194:1004713732:1

name	(CDS detail)
type	STS
link
xref	UniSTS:124614
definition	standard_name : 46.MMHAP17FH4.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:164113
definition	standard_name : AI836200

name	(CDS detail)
type	STS
link
xref	UniSTS:178392
definition	standard_name : AW212394

name	(CDS detail)
type	STS
link
xref	UniSTS:125706
definition	standard_name : U27295

name	(CDS detail)
type	STS
link
xref	UniSTS:178393
definition	standard_name : AV137389

name	(CDS detail)
type	STS
link
xref	UniSTS:164112
definition	standard_name : AI648812

name	(CDS detail)
type	STS
link
xref	UniSTS:161758
definition	standard_name : RH124936

name	(CDS detail)
type	STS
link
xref	UniSTS:142259
definition	standard_name : D1Mit545

name	(CDS detail)
type	STS
link
xref	UniSTS:496661
definition	standard_name : Mstn

name	(CDS detail)
type	STS
link
xref	UniSTS:161204
definition	standard_name : RH124382

name	(CDS detail)
type	STS
link
xref	UniSTS:216850
definition	standard_name : RH133567

name	(CDS detail)
type	STS
link
xref	UniSTS:124038
definition	standard_name : 33.MMHAP34FRC12.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128913
definition	standard_name : D1Mit544

name	(CDS detail)
type	STS
link
xref	UniSTS:165730
definition	standard_name : AW046457

name	(CDS detail)
type	STS
link
xref	UniSTS:498358
definition	standard_name : Stk17b

name	(CDS detail)
type	STS
link
xref	UniSTS:209899
definition	standard_name : RH135901

name	(CDS detail)
type	STS
link
xref	UniSTS:224479
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:162180
definition	standard_name : RH125358

name	LOC546736 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149233875 GeneID:546736
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_033741.1

name	LOC100042094 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149233833 GeneID:100042094
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins product : similar to 40s ribosomal protein S27a pseudo : _no_value transcript_id : XR_033274.1

name	EG433305 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149233876 GeneID:433305 MGI:3646585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 180 ESTs, 22 Proteins product : predicted gene, EG433305 pseudo : _no_value transcript_id : XR_033746.1

clone name	MSMg01-366D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356L19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-330A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371A13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-446H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156F07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-367J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292C15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-154G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436G13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-202J15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-407J13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-263L04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-341P09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-316E18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-422J07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-291O05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-452O14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-354F06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-370I03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-479H09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-513L13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-493C10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-161P18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-160O23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-479E01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-232O15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-343L07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-500O12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-095N21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-140D02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-452L01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-474I18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-054B10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-483E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218B19
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-168L16.b	B6Ng01-168L16.g
ACC	DH959891	DH959892
length	864	1,215
definition	DH959891\|Mus musculus domesticus DNA, BAC clone: B6Ng01-168L16, 5' end.	DH959892\|Mus musculus domesticus DNA, BAC clone: B6Ng01-168L16, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattcctttctcaatgggacccctggagtgggggagggggggtcacaga caccatctgagtttcccccaacccctgcctttctccttttatatacttta atgtgtgtctgcttccagttctctggccttacaagtcaagcttgccctgt ttactaagagtgaagtggtgtccagtgtgttgaatgacatgaaacactag tacttaggaagctgagacaggggtattgagagcttacagcctgtctgggt cccttgaaaccttatctccacagataaggaagtaaattgataactaaatg tcacagggaattgaggaagccactgacagtttatttacggtttagtgttg gtgattccaggcgtattacccacagttcttattatctgaattgctagtta catctaggaggagtcagtaatttattgtacggactgtggaaggggaggta gagaggaagagaacctgagaagctctccccagacaggaatctcagatgca gggctcagtcacctatcatttttgagtgctaacttctttctttgttattt aggtgtttacattcatggattgtttttggatggagcttcctgggacagga agaccaagaaacttgcagaatcacatcctaaagttctgtatgacacagtc cccgtggttagtatttactaagggttacatgcacgtgtgtgcggatatgg atatatgcacattcagtctgttcttgtttgttcatggtaacttttgctct ataaagctgtttccaatgccgcactactagatatattcgctcttaatggg gcttctgaatttaattcctatggtatctgcatttctgttaagttgattga tacatatccgttgt	gaattccacataaaaccagagacagtgaaacttatagaggagaaagtggg gaaaagcctcaaagatatgggcacaggggaaaaaattcctgaatagaaca gcaatggcttgtgctataagatcgagaatagacaaatgggacctcataaa attgcaaagcttctgtaaggcaaaagacaccgtcaataagacaaaaaggc caccaacagattgggaaaggatctttacctatcctaaatcagatagggga ctaatatccaatatatatataaagaactcaagaaggtgggctccagaaaa tcgaataaccccattaaaaaatggggctcagagctgaacaaagaattctc acctgaggaataccgaatggcagagaagcacctgaaaaaaatgttcagca tctgtaatcatcagggaaatgcaaatcaaagcaaccctgagattccacct cacaccagttagaatggctaagatcaaaaactcagatgacagcagatgct ggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgc aagcttgtacaaccactctggaaatcagtctggtggttcctcagaaaatc ggacatagtactactagaggatcccgcaatacttctcctgggcatatatc cagaagatgtcccaaccggtaagaaggacacatgctccactatgttctta gcagccttatttataatagccagatgctggaaagaacccagatgtccctc aacagaggaatggatacagaaaatgtggtacatttacacaatggagtact actcagctattaaaaagaatgaatttatgaattcctaggcaaatggatgg acctggaggacatcatcctgagtgaggtaacacaatcacaaaagagctca catgatatgtactcactgatagtggatattagcatagaaacttagatacc cagatacagatagaatctgcaaatacatgaactcagagatgagaccaaaa catggacactttgccccttcttagattggaacaaacactcatggaggagt actgaaacaaagtttgagctgagatgaaagagactgcatacccggggaca tctcataatcagcttcatgctgaactcatgccattaactagccagattgc tcaggacgatagcgtttcttgtgaggcattgcttgcgcctaccaactcac agagtggtgcagttc
quality values	Open. Hide. 61 41 31 38 61 61 61 61 50 31 61 61 38 24 47 61 61 61 61 47 41 55 55 61 61 14 12 11 10 11 17 13 22 22 36 44 52 59 61 61 61 61 61 59 59 59 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 36 39 28 19 26 26 23 24 24 28 30 37 44 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 52 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 61 61 61 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 59 59 59 52 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 59 61 52 52 52 43 59 59 52 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 52 35 43 55 41 55 55 59 59 59 59 59 59 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 59 59 59 59 59 61 59 59 59 59 59 59 36 61 52 61 61 59 59 59 59 59 45 61 61 59 39 36 35 35 32 32 43 44 45 36 61 59 59 59 59 61 61 59 59 59 59 59 45 61 52 61 59 59 52 61 61 52 61 59 61 45 59 61 59 59 59 59 59 59 59 52 52 59 50 36 52 59 61 36 52 61 59 59 59 59 59 61 59 61 59 61 59 59 59 59 59 61 61 59 59 49 59 59 59 36 59 52 59 36 26 27 38 32 12 28 31 61 59 61 61 59 59 59 59 43 16 9 12 12 13 22 23 59 59 59 52 59 43 52 59 49 43 35 38 37 30 39 49 43 52 49 55 55 36 18 52 36 31 19 27 15 37 27 52 40 49 55 52 37 52 36 49 49 24 49 21 49 43 55 34 31 43 43 27 49 36 37 37 16 15 17 8 16 31 28 52 28 24 36 25 12 12 28 43 37 37 13 12 15 6 11 29 37 30 28 52 41 50 49 50 43 34 43 26 24 50 49 13 16 13 15 12 18 29 19 10 19 12 12 19 13 22 19 10 14 9 24 39 34 43 25 24 22 21 10 16 18 32 38 24 24 15 24 24 31 14 25 26 37 35 37 30 50 23 43 38 38 18 43 11 26 29 39 37 27 24 28 23 19 19 14 21 31 38 38 43 29 43 39 50 43 43 43 43 28 32 43 43 29 29 45 21 13 11 9 14 14 14 13 24 16 9 8 6 7 8 20 17 24 29 31 35 18 35 19 29 31 9 11 8 4 6 9 16 23 16 19 28 47 10 38 35 36 36 27 32 24 39 38 25 22 16 13 9 11 38 10 5 13 7 20 10 32 30 38 13 8 10 8 20 18 17 10 10 7 10 10 23 17 29 21 34 5 26 8 33 27 10 33 27 20 9 13 24 18 10 10 8 13 8 14 9 8 14 27 8 9	Open. Hide. 61 61 37 49 61 61 19 12 27 7 20 10 12 12 12 28 28 20 18 23 8 23 24 13 61 59 61 59 59 59 59 61 61 59 55 34 35 55 55 55 61 61 61 61 61 61 59 61 59 59 59 30 30 28 30 28 44 52 61 61 61 61 59 55 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 55 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 59 50 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 45 61 61 61 61 61 61 61 61 61 53 61 61 61 61 61 61 61 61 50 61 52 61 61 47 61 61 61 61 61 53 61 61 61 53 61 47 61 61 61 61 61 61 61 61 61 61 61 61 43 61 61 61 61 61 61 61 53 61 61 61 61 39 61 61 61 61 61 61 61 61 61 57 53 57 57 43 57 57 46 52 57 57 53 57 53 47 47 57 53 53 57 57 53 53 57 57 57 57 50 57 53 50 53 43 57 57 57 50 34 47 47 34 47 52 53 53 57 57 38 53 53 53 52 57 53 53 53 47 57 53 57 53 53 39 57 52 28 46 57 53 53 53 53 52 52 50 46 57 57 53 53 52 47 47 47 41 46 42 50 53 42 45 52 53 57 52 28 45 57 57 35 57 28 53 45 43 33 33 35 45 47 53 37 53 42 47 46 40 57 52 31 57 47 31 47 50 45 53 53 53 50 53 50 36 39 40 38 47 57 53 53 44 53 39 37 34 52 50 35 53 53 29 47 42 52 57 53 50 42 42 57 48 53 23 44 45 37 40 41 33 44 37 37 46 41 53 57 37 36 40 44 24 38 38 30 37 48 33 52 35 33 39 44 40 33 18 35 37 31 40 34 8 37 35 40 31 41 57 29 33 34 53 24 30 31 57 57 27 29 46 23 41 53 30 30 30 29 41 51 46 30 47 21 47 23 45 27 47 45 44 26 35 29 33 36 36 40 30 30 29 27 30 31 32 48 27 30 46 51 48 48 29 33 18 13 30 34 34 25 51 29 28 29 25 46 19 17 27 31 32 28 20 5 39 21 32 39 24 27 43 24 27 18 29 27 23 14 34 34 29 37 22 19 28 22 10 16 28 31 23 29 24 38 28 41 29 28 34 36 35 31 24 14 28 28 29 14 29 30 16 31 34 23 41 24 43 51 38 16 30 14 29 29 24 22 19 16 29 31 17 12 20 26 29 19 20 34 25 34 23 27 28 35 27 10 12 13 16 23 23 13 15 23 30 35 29 22 29 14 24 31 27 31 51 24 28 22 24 19 10 22 6 18 19 51 17 22 5 26 17 15 13 16 7 9 15 26 20 27 29 25 31 31 34 13 24 44 22 21 12 22 12 28 14 20 11 16 32 24 30 18 14 5 16 8 11 31 7 34 12 12 13 32 35 8 11 9 17 18 27 13 18 9 10 9 36 13 17 16 28 27 13 10 7 19 13 30 18 6 30 6 6 29 26 14 6 6 12 34 16 5 5 6 6 25 8 12 22 12 5 4 8 12 5 19 9 22 23 25 8 4 6 15 7 19 15 9 20 31 6 27 12 6 8 11 8 12 9 16 20 23 9 18 7 26 11 10 19 15 15 7 22 4 13 5 7 28 7 7 36 30 9 10 3 6 12 7 12 10 4 5 7 8 5 10 8 18 10 3 12 3 4 2 6 8 5 7 10 10 8 4 22 3 7 6 6 5 6 4 6 9 6 10 3 3 7 6 4 16 5 3 14 11 6 8 11 3 1 6 7 4 3 1 3 2 2 4 8 4 4 6 4 8 10 7 4 4 5 9 19 16 8 4 5 4 6 5 5 5 17 3 17 9 7 3 1 3 1 1 13 6 4 8 4 4 4 4 20 8 4 8 21 9 4 3 4 6 3 3 4

Alignment Information

BAC End 1

BAC End 2

seq1: chr1_53462317_53463175
seq2: B6Ng01-168L16.b_49_912 (reverse)

seq1  ACAACGG-TATGTATCAATCAAC-TAACAGAAATGCAGATACCATAGAAA  48
      ||||||| ||||||||||||||| ||||||||||||||||||||||| ||
seq2  ACAACGGATATGTATCAATCAACTTAACAGAAATGCAGATACCATAGGAA  50

seq1  CTAAATTCAGAAG-CCCATTAAGAGCAAATATATCTAGTAGTGCAGCATT  97
       |||||||||||| |||||||||||| ||||||||||||||||| |||||
seq2  TTAAATTCAGAAGCCCCATTAAGAGCGAATATATCTAGTAGTGCGGCATT  100

seq1  GGGAACAGCTTTATAGAGC-AAAGTTACCATGAAC-AACAAGAACAGACT  145
      || |||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  GGAAACAGCTTTATAGAGCAAAAGTTACCATGAACAAACAAGAACAGACT  150

seq1  GGATGTGCATATATCCATATCCGCACACACGTGCATGTAACCCTTAGTAA  195
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGCATATATCCATATCCGCACACACGTGCATGTAACCCTTAGTAA  200

seq1  ATACTAACCACGGGGACTGTGTCATACAGAACTTTAGGATGTGATTCTGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAACCACGGGGACTGTGTCATACAGAACTTTAGGATGTGATTCTGC  250

seq1  AAGTTTCTTGGTCTTCCTGTCCCAGGAAGCTCCATCCAAAAACAATCCAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTGGTCTTCCTGTCCCAGGAAGCTCCATCCAAAAACAATCCAT  300

seq1  GAATGTAAACACCTAAATAACAAAGAAAGAAGTTAGCACTCAAAAATGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAACACCTAAATAACAAAGAAAGAAGTTAGCACTCAAAAATGAT  350

seq1  AGGTGACTGAGCCCTGCATCTGAGATTCCTGTCTGGGGAGAGCTTCTCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTGAGCCCTGCATCTGAGATTCCTGTCTGGGGAGAGCTTCTCAG  400

seq1  GTTCTCTTCCTCTCTACCTCCCCTTCCACAGTCCGTACAATAAATTACTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTCCTCTCTACCTCCCCTTCCACAGTCCGTACAATAAATTACTG  450

seq1  ACTCCTCCTAGATGTAACTAGCAATTCAGATAATAAGAACTGTGGGTAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCTAGATGTAACTAGCAATTCAGATAATAAGAACTGTGGGTAAT  500

seq1  ACGCCTGGAATCACCAACACTAAACCGTAAATAAACTGTCAGTGGCTTCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGGAATCACCAACACTAAACCGTAAATAAACTGTCAGTGGCTTCC  550

seq1  TCAATTCCCTGTGACATTTAGTTATCAATTTACTTCCTTATCTGTGGAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCTGTGACATTTAGTTATCAATTTACTTCCTTATCTGTGGAGA  600

seq1  TAAGGTTTCAAGGGACCCAGACAGGCTGTAAGCTCTCAATACCCCTGTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTCAAGGGACCCAGACAGGCTGTAAGCTCTCAATACCCCTGTCT  650

seq1  CAGCTTCCTAAGTACTAGTGTTTCATGTCATTCAACACACTGGACACCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCTAAGTACTAGTGTTTCATGTCATTCAACACACTGGACACCAC  700

seq1  TTCACTCTTAGTAAACAGGGCAAGCTTGACTTGTAAGGCCAGAGAACTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTTAGTAAACAGGGCAAGCTTGACTTGTAAGGCCAGAGAACTGG  750

seq1  AAGCAGACACACATTAAAGTATATAAAAGGAGAAAGGCAGGGGTTGGGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACACACATTAAAGTATATAAAAGGAGAAAGGCAGGGGTTGGGGG  800

seq1  AAACTCAGATGGTGTCTGTGACCCCCCCTCCCCCACTCCAGGGGTCCCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGATGGTGTCTGTGACCCCCCCTCCCCCACTCCAGGGGTCCCAT  850

seq1  TGAGAAAGGAATTC  859
      ||||||||||||||
seq2  TGAGAAAGGAATTC  864

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information