BAC Information

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BAC

Clone NameB6Ng01-168N07
Chromosome1 (Build37)
Map Location 25,448,196 - 25,594,025
singlet/doubletdoublet
Overlap geneBai3
Upstream geneCol19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168N07.bB6Ng01-168N07.g
ACCDH959969DH959970
length4091,132
definitionDH959969|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N07, 5' end.DH959970|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,593,611 - 25,594,025)(25,448,196 - 25,449,169)
sequence
atcgtttgtttggttagaagttgaccttttgtgagctgctgcctcttcgt
gtgaggttttcctacattgtgtctctgtcttccattgttcggggaacttt
tagaatttattatttatgtaatctcagacctactgttgcctcttctttct
gattgtggtttcaatctctttaatctattggtgggggtatggctactcct
ccttcttagtaactcactatatggagtatattattgtgtctttcactttt
aacctgtgtaaacctttagtggtaaaatgagctaattgtaaacatcatgg
aatttaaaaactatttttaagctatagagaaaccattttttaaattgaac
tttaaaattattttagctctgtgtgtgtgagtgtgtgtgtgtgtgtgtgt
gtgtgtgtg
gaattcatttgcaatgttaagaaaaatgtggtttgttaagaatcaagggg
cggggctttgaatgcctattcacgagatagtcaaaagggaacttggagtg
aatgactgaaatgaaatgtaagtaaaagtctgggctttagttttcgagag
ctgagctatgtagatgagttgtctgatgatctccagagaaagctgtcttg
aacagaacacagatcatcagcttgtatcccatgatttttttcaaacagtc
cttctctcaagaaccactctccaagccaaggctggtctttggcacatgca
taattatcaccctccataaaactccaactgcagcaaagaccccaacataa
aaccagacacaatgaacctgggagaagagaaagtgtggaacagtgttaaa
tgcattggctcagaaaatgatttctgaacagaatgcctattgaacaggca
ctaagatcgataattaataaattggaccccatgaagctgggaagcttctg
taatggaaagaactctgtcaattggataatgaggcagcctaagaaatgag
aaaagatttttaccaacttcataacgatgtctaatatccaaaatatataa
agtactcaagaaactagatatttttaaaaaacaaacaatacagttaaaaa
tgggttacagatctaaatggggaattcttttttttttttcacgcaaattt
actaattttcagcttagtatttttttttccattttttattaggtatttcg
ctcatttacatttgcaatgctataccaaaagtcccccatagccacccacc
ccctctcccctacccaccactccccttttatggccctggcgttcccttgt
actggagcatataaagtttgcgtgtccaatgggcttctctttccagtgat
ggccgactaaggccatctttttgatgcatatgcagctagagtcagagctc
cggggtactggttagttcataatgtgttcactataggtgcagatccctta
gcttcttagtactttctctagctcttcattgggggcatgtgtctgtcctg
ctgcagatgtgctgacctatgttgctaaaacattgtgttcgccaacaaat
tagtataaaggtcaatgcataggatgtagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_25593611_25594025
seq2: B6Ng01-168N07.b_48_462 (reverse)

seq1  CACACACACACACACACACACACACACACTCACACACACAGAGCTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACTCACACACACAGAGCTAAAAT  50

seq1  AATTTTAAAGTTCAATTTAAAAAATGGTTTCTCTATAGCTTAAAAATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAGTTCAATTTAAAAAATGGTTTCTCTATAGCTTAAAAATAGT  100

seq1  TTTTAAATTCCATGATGTTTACAATTAGCTCATTTTACCACTAAAGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTCCATGATGTTTACAATTAGCTCATTTTACCACTAAAGGTTT  150

seq1  ACACAGGTTAAAAGTGAAAGACACAATAATATACTCCATATAGTGAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTTAAAAGTGAAAGACACAATAATATACTCCATATAGTGAGTTA  200

seq1  CTAAGAAGGAGGAGTAGCCATACCCCCACCAATAGATTAAAGAGATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGGAGGAGTAGCCATACCCCCACCAATAGATTAAAGAGATTGAA  250

seq1  ACCACAATCAGAAAGAAGAGGCAACAGTAGGTCTGAGATTACATAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATCAGAAAGAAGAGGCAACAGTAGGTCTGAGATTACATAAATAA  300

seq1  TAAATTCTAAAAGTTCCCCGAACAATGGAAGACAGAGACACAATGTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTAAAAGTTCCCCGAACAATGGAAGACAGAGACACAATGTAGGA  350

seq1  AAACCTCACACGAAGAGGCAGCAGCTCACAAAAGGTCAACTTCTAACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCACACGAAGAGGCAGCAGCTCACAAAAGGTCAACTTCTAACCAA  400

seq1  ACAAACGATGAATTC  415
      |||||||||||||||
seq2  ACAAACGATGAATTC  415

seq1: chr1_25448196_25449169
seq2: B6Ng01-168N07.g_249_1199

seq1  TCCAGAGAAAGCTGTCTTGAACAGAACACAGATCATCAGCTTGTATCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAAAGCTGTCTTGAACAGAACACAGATCATCAGCTTGTATCCCA  50

seq1  TGATTTTTTTCAAACAGTCCTTCTCTCAAGAACCACTCTCCAAGCCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTCAAACAGTCCTTCTCTCAAGAACCACTCTCCAAGCCAAGG  100

seq1  CTGGTCTTTGGCACATGCATAATTATCACCCTCCATAAAACTCCAACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTTGGCACATGCATAATTATCACCCTCCATAAAACTCCAACTGC  150

seq1  AGCAAAGACCCCAACATAAAACCAGACACAATGAACCTGGGAGAAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGACCCCAACATAAAACCAGACACAATGAACCTGGGAGAAGAGAA  200

seq1  AGTGTGGAACAGTGTTAAATGCATTGGCTCAGAAAATGATTTCTGAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAACAGTGTTAAATGCATTGGCTCAGAAAATGATTTCTGAACAG  250

seq1  AATGCCTATTGAACAGGCACTAAGATCGATAATTAATAAATTGGACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTATTGAACAGGCACTAAGATCGATAATTAATAAATTGGACCCCA  300

seq1  TGAAGCTGGGAAGCTTCTGTAATGGAAAGAACTCTGTCAATTGGATAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGGGAAGCTTCTGTAATGGAAAGAACTCTGTCAATTGGATAATG  350

seq1  AGGCAGCCTAAGAAATGAGAAAAGATTTTTACCAACTTCATAACGATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCTAAGAAATGAGAAAAGATTTTTACCAACTTCATAACGATGTC  400

seq1  TAATATCCAAAATATATAAAGTACTCAAGAAACTAGATATTTTTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCAAAATATATAAAGTACTCAAGAAACTAGATATTTTTAAAAAA  450

seq1  CAAACAATACAGTTAAAAATGGGTTACAGATCTAAATGGGGAATTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATACAGTTAAAAATGGGTTACAGATCTAAATGGGGAATTCTTTT  500

seq1  TTTTTTTTCACGCAAATTTACTAATTTTCAGCTTAGTATTTTTTTTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCACGCAAATTTACTAATTTTCAGCTTAGTATTTTTTTTTCCA  550

seq1  TTTTTTATTAGGTATTTCGCTCATTTACATTTGCAATGCTATACCAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTAGGTATTTCGCTCATTTACATTTGCAATGCTATACCAAAAG  600

seq1  TCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCACTCCCCTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCACTCCCCTTTTAT  650

seq1  GGCCCTGGCGTTCCCCTGTACTGGAGCATATAAAGTTTGCGTGTCCAATG  700
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGCGTTCCCTTGTACTGGAGCATATAAAGTTTGCGTGTCCAATG  700

seq1  GGCCTCTCTTTCCAGTGATGGCCGACT-AGGCCATC-TTTTGATGCATAT  748
      ||| ||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GGCTTCTCTTTCCAGTGATGGCCGACTAAGGCCATCTTTTTGATGCATAT  750

seq1  GCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTC  798
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  GCAGCTAGAGTC-AGAGCTCCGGGGTACTGGTTAGTTCATAATG-TGTTC  798

seq1  CACCTATAGGGTTGCAGATCCCTTTAGCTTCTTTGGTACTTTCTCTAGCT  848
         |||||||  |||||||||| |||||||| || |||||||||||||||
seq2  --ACTATAGG--TGCAGATCCC-TTAGCTTC-TTAGTACTTTCTCTAGCT  842

seq1  CCTTCATTGGGGGCCATGTGTCTGTCCTGCCTGCAAGATGTGCTGAGCCT  898
       |||||||||||| ||||||||||||||| |||| ||||||||||| |||
seq2  -CTTCATTGGGGG-CATGTGTCTGTCCTG-CTGC-AGATGTGCTGA-CCT  887

seq1  ATGGTGGCCTAGAACATGTGTGAGTCGCCAAACAACATTTAGGTTAATTA  948
      ||| ||  ||| ||||| ||||  |||||||  ||   ||||  ||  ||
seq2  ATGTTG--CTAAAACAT-TGTG-TTCGCCAACAAA---TTAG--TA--TA  926

seq1  AAGGTCAATGCCATAGGAAGTAGCTC  974
      |||||||||| ||||||| |||||||
seq2  AAGGTCAATG-CATAGGATGTAGCTC  951