BAC Information

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BAC

Clone NameB6Ng01-168N11
Chromosome1 (Build37)
Map Location 183,146,989 - 183,246,215
singlet/doubletdoublet
Overlap geneLOC100042363, LOC666519
Upstream genePsen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26
Downstream geneCnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168N11.bB6Ng01-168N11.g
ACCDH959977DH959978
length1,1211,158
definitionDH959977|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N11, 5' end.DH959978|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(183,245,054 - 183,246,215)(183,146,989 - 183,148,158)
sequence
gaattcattagaaatgcgttcagatcactatgggtttcagagagtgcaaa
gccagccatctcagaatagaccctgggaggtacatgctcctattattact
tacagacaagatatagacacgtggggaccttaactggtttgcctgaagtc
aacacatatgactcccaaatggattctccacctccaggttcttccagact
gtgatagcctgcacagtgaaagaaagaaaaaaaaaaaaaaaaacagctac
acaaggctgagaccagatgacacagagactaacagtccaaagtataagcc
aagtgaggtagttcacacctgtaataccagtattcaggagctagaggcag
gaggattgcaggtttaaggccagtcttagcaaggtactgtctaaggataa
aaaggaagaaaatttaaaaacaaacaacagtgaatacacatgtcattgtg
tccctcatcccaggaaggaaaccatcgaacatcctgtgaggacaggcaat
atactgaagcttctgagagtggagcagggtgggtggggcaccaacacgcc
cttcctattacctacgctgattccagttaaaacccacagaagccaatgag
taaagccatctggacaagtggagcctcacaacccctacctagtgagacag
tcagtattctccctctatagcaccaactgaagctccctacagctacaacc
ctgggaaggtacatggctgtttcagtaagtcccatacttagcacacccat
ggaccatatgttactcaagagaaagagaagggttcgagaccagaagagag
agactatgtgtgtgcccgtgtgtctctgtgtatatgtttagctccaagct
atgaaaagaatatggcagactcataatcaataaatgtttaattaaatgtc
tccaaagtgacatgccaacctcattgttaattattattcacaggaatttc
tttccatttggaaacatctgtattttagttctgtatacttcacagatccc
agtgtgatgagaatcacagtaattgtgataatagtgtcatagctagatca
ctgtaaagcaattatttcaactctcaaatattacataaggacgttattta
tgtgatttttttttagcagat
gaattctccagggctgggaaggactaagaggccaggtcccacgctgtgct
gcatagagaaggaacgttgttacaagccccatgtacagagctcttctcgg
ggaaatgggaaggcacacacatgtgcttacatttctggtaggacagacgg
gtgggcagtggctgtctgtgaagggactgagtggagcttccctcacttta
ggttttctaactgtccatacatttttaaatgtcaacagggtttatttggg
ctataaagaaaatagatacattgaccctttttttttttgtattaatgtta
tgatttaaaaacactagtgctgggggctggagagatggctcagtggttaa
gagcactgactgctcttccaaaggtcctgagttcaaatctcagcaaccac
atggtggctcacaaccatccataatgagatctgatgcccttttctggtgt
gtctgaagacaactacagtgtacttagatataataaataaataaataaat
aaataaataaataaataaatctttaaggaaaaaaaaaaccaaaacactag
tgtttctaaaagaacactcaaaaccaatcaatctgagatattaaccctaa
taaaaacatgacaggcaaagcagtaagtgctctgtatttgttctttaaga
atctcctctctgtaacctggctctcctatgctctcaggctgctgtctccc
acatatgtaccctgtcatcccctcccaccacacgcacacacacacacaca
cacacacacacacacacggctaaattcatctgggagataaagagcagaaa
ggcatttctatttattaactttgaaaagtagataaataattaatagccca
gggagtccctgcacagagccttacaacaggccctttggggcagtcttcct
tactcacaggtcaaatgcagtctttatccctctgacattgttatagctca
taaataatgaagggacatatgacttaagaagtaaattctggttattaaaa
atatagtcatatagggaaactagactagtagaaattgaactgacattttt
gaagcagtttaaaaactgatggggtatggtagtgaaattcctttaatctc
agcaatcaggacacgcaacgggaagattctcctttgagtcagacagcctg
atctacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_183245054_183246215
seq2: B6Ng01-168N11.b_48_1168 (reverse)

seq1  ATCTGGCTAAAAAAAAAAAAATCCACATTAAATATAACGTTCTTTATTGT  50
      |||| ||||||||||||      |||||   | ||||||| |||   |||
seq2  ATCT-GCTAAAAAAAAA-----TCACAT---AAATAACGTCCTT--ATGT  39

seq1  AAATATTTTGGAAGAGTTTTTAAAAATAATTTTGCCTTTACAGTGATCTA  100
       |||||||    ||||||     ||||||||    |||||||||||||||
seq2  -AATATTT---GAGAGTT----GAAATAATT---GCTTTACAGTGATCTA  78

seq1  GCTATGAACAACTTATTTAATTCACAATTTACTGTGATTTCTCATTCACA  150
      |||||| |||   ||||    |||||| ||||||||| |||||| |||||
seq2  GCTATG-ACA--CTATT---ATCACAA-TTACTGTGA-TTCTCA-TCACA  119

seq1  CTTGGGATTCTTGTGAAGTAATTACAGAAACCTAAAATACAGATTGTTTC  200
      | ||||||   |||||||||  |||||||  |||||||||||| ||||||
seq2  C-TGGGAT--CTGTGAAGTA--TACAGAA--CTAAAATACAGA-TGTTTC  161

seq1  CAAATGGAAAGAAATTCCTGTGAATAATAATTTAACAAATGAGGTTGGCA  250
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  CAAATGGAAAGAAATTCCTGTGAATAATAA-TTAAC-AATGAGGTTGGCA  209

seq1  TGTCACTTTGGAGACATTTAATTAAACATTTATTGATTATGAGTCTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTTGGAGACATTTAATTAAACATTTATTGATTATGAGTCTGCCA  259

seq1  TATTCTTTTCATAGCTTGGAGCTAAACATATACACAGAGACACACGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTCATAGCTTGGAGCTAAACATATACACAGAGACACACGGGCA  309

seq1  CACACATAGTCTCTCTCTTCTGGTCTCGAACCCTTCTCTTTCTCTTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGTCTCTCTCTTCTGGTCTCGAACCCTTCTCTTTCTCTTGAGT  359

seq1  AACATATGGTCCATGGGTGTGCTAAGTATGGGACTTACTGAAACAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGGTCCATGGGTGTGCTAAGTATGGGACTTACTGAAACAGCCAT  409

seq1  GTACCTTCCCAGGGTTGTAGCTGTAGGGAGCTTCAGTTGGTGCTATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCCCAGGGTTGTAGCTGTAGGGAGCTTCAGTTGGTGCTATAGAG  459

seq1  GGAGAATACTGACTGTCTCACTAGGTAGGGGTTGTGAGGCTCCACTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATACTGACTGTCTCACTAGGTAGGGGTTGTGAGGCTCCACTTGTC  509

seq1  CAGATGGCTTTACTCATTGGCTTCTGTGGGTTTTAACTGGAATCAGCGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCTTTACTCATTGGCTTCTGTGGGTTTTAACTGGAATCAGCGTA  559

seq1  GGTAATAGGAAGGGCGTGTTGGTGCCCCACCCACCCTGCTCCACTCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATAGGAAGGGCGTGTTGGTGCCCCACCCACCCTGCTCCACTCTCAG  609

seq1  AAGCTTCAGTATATTGCCTGTCCTCACAGGATGTTCGATGGTTTCCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCAGTATATTGCCTGTCCTCACAGGATGTTCGATGGTTTCCTTCC  659

seq1  TGGGATGAGGGACACAATGACATGTGTATTCACTGTTGTTTGTTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGAGGGACACAATGACATGTGTATTCACTGTTGTTTGTTTTTAAA  709

seq1  TTTTCTTCCTTTTTATCCTTAGACAGTACCTTGCTAAGACTGGCCTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCTTTTTATCCTTAGACAGTACCTTGCTAAGACTGGCCTTAAA  759

seq1  CCTGCAATCCTCCTGCCTCTAGCTCCTGAATACTGGTATTACAGGTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAATCCTCCTGCCTCTAGCTCCTGAATACTGGTATTACAGGTGTGA  809

seq1  ACTACCTCACTTGGCTTATACTTTGGACTGTTAGTCTCTGTGTCATCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTCACTTGGCTTATACTTTGGACTGTTAGTCTCTGTGTCATCTGG  859

seq1  TCTCAGCCTTGTGTAGCTGTTTTTTTTTTTTTTTTTCTTTCTTTCACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTTGTGTAGCTGTTTTTTTTTTTTTTTTTCTTTCTTTCACTGT  909

seq1  GCAGGCTATCACAGTCTGGAAGAACCTGGAGGTGGAGAATCCATTTGGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTATCACAGTCTGGAAGAACCTGGAGGTGGAGAATCCATTTGGGA  959

seq1  GTCATATGTGTTGACTTCAGGCAAACCAGTTAAGGTCCCCACGTGTCTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGTGTTGACTTCAGGCAAACCAGTTAAGGTCCCCACGTGTCTAT  1009

seq1  ATCTTGTCTGTAAGTAATAATAGGAGCATGTACCTCCCAGGGTCTATTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCTGTAAGTAATAATAGGAGCATGTACCTCCCAGGGTCTATTCT  1059

seq1  GAGATGGCTGGCTTTGCACTCTCTGAAACCCATAGTGATCTGAACGCATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTGGCTTTGCACTCTCTGAAACCCATAGTGATCTGAACGCATT  1109

seq1  TCTAATGAATTC  1162
      ||||||||||||
seq2  TCTAATGAATTC  1121

seq1: chr1_183146989_183148158
seq2: B6Ng01-168N11.g_72_1229

seq1  GAATTCTCCAGGGCTGGGAAGGACTAAGAGGCCAGGTCCCACGCTGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGGCTGGGAAGGACTAAGAGGCCAGGTCCCACGCTGTGCT  50

seq1  GCATAGAGAAGGAACGTTGTTACAAGCCCCATGTACAGAGCTCTTCTCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAGAAGGAACGTTGTTACAAGCCCCATGTACAGAGCTCTTCTCGG  100

seq1  GGAAATGGGAAGGCACACACATGTGCTTACATTTCTGGTAGGACAGACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGGAAGGCACACACATGTGCTTACATTTCTGGTAGGACAGACGG  150

seq1  GTGGGCAGTGGCTGTCTGTGAAGGGACTGAGTGGAGCTTCCCTCACTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGTGGCTGTCTGTGAAGGGACTGAGTGGAGCTTCCCTCACTTTA  200

seq1  GGTTTTCTAACTGTCCATACATTTTTAAATGTCAACAGGGTTTATTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTAACTGTCCATACATTTTTAAATGTCAACAGGGTTTATTTGGG  250

seq1  CTATAAAGAAAATAGATACATTGACCCTTTTTTTTTTTGTATTAATGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGAAAATAGATACATTGACCCTTTTTTTTTTTGTATTAATGTTA  300

seq1  TGATTTAAAAACACTAGTGCTGGGGGCTGGAGAGATGGCTCAGTGGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAAAACACTAGTGCTGGGGGCTGGAGAGATGGCTCAGTGGTTAA  350

seq1  GAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCTCAGCAACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCTCAGCAACCAC  400

seq1  ATGGTGGCTCACAACCATCCATAATGAGATCTGATGCCCTTTTCTGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCTCACAACCATCCATAATGAGATCTGATGCCCTTTTCTGGTGT  450

seq1  GTCTGAAGACAACTACAGTGTACTTAGATATAATAAATAAATAAATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGACAACTACAGTGTACTTAGATATAATAAATAAATAAATAAAT  500

seq1  AAATAAATAAATAAATAAATCTTTAAGGAAAAAAAAAACCAAAACACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATCTTTAAGGAAAAAAAAAACCAAAACACTAG  550

seq1  TGTTTCTAAAAGAACACTCAAAACCAATCAATCTGAGATATTAACCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAAAAGAACACTCAAAACCAATCAATCTGAGATATTAACCCTAA  600

seq1  TAAAAACATGACAGGCAAAGCAGTAAGTGCTCTGTATTTGTTCTTTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATGACAGGCAAAGCAGTAAGTGCTCTGTATTTGTTCTTTAAGA  650

seq1  ATCTCCTCTCTGTAACCTGGCTCTCCTATGCTCTCAGGCTGCTGTCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCTCTGTAACCTGGCTCTCCTATGCTCTCAGGCTGCTGTCTCCC  700

seq1  ACATATGTACCCTGTCATCCCCTCCCACCACACGCACACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTACCCTGTCATCCCCTCCCACCACACGCACACACACACACACA  750

seq1  CACACACACACACACACGGCTAAATTCATCTGGGAGATAAAGAGCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACGGCTAAATTCATCTGGGAGATAAAGAGCAGAAA  800

seq1  GGCATTTCTATTTATTAACTTTGAAAAGTAGATAAATAATTAATAGCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTCTATTTATTAACTTTGAAAAGTAGATAAATAATTAATAGCCCA  850

seq1  GGGAGTCCCTGCACAGAGCCTTACAACAGGCCCTTT-GGGCAGTCTTCCT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGAGTCCCTGCACAGAGCCTTACAACAGGCCCTTTGGGGCAGTCTTCCT  900

seq1  TACTCACAGGTCAAATGCAGTCTTTATCCCTCTGACATTGTTATAGCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACAGGTCAAATGCAGTCTTTATCCCTCTGACATTGTTATAGCTCA  950

seq1  TAAATAATGAAGGGACAATTATGACTTAAGAAGTAAATTCTGGTTATTAA  999
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  TAAATAATGAAGGGACA--TATGACTTAAGAAGTAAATTCTGGTTATTAA  998

seq1  AAATATAGTCCATATAGGGATACTAGACTAGTAGATATTTGAAACTGAAC  1049
      ||||||||| |||||||||| |||||||||||||| |||   ||||| ||
seq2  AAATATAGT-CATATAGGGAAACTAGACTAGTAGAAATT--GAACTG-AC  1044

seq1  ATTTTTGAAGCAGGTTTTAAAAAACTTGATTGGGGTATGGTAGTG-AATT  1098
      |||||||||||||  ||||||||   ||| ||||||||||||||| ||||
seq2  ATTTTTGAAGCAG--TTTAAAAA--CTGA-TGGGGTATGGTAGTGAAATT  1089

seq1  CCTTTAATCTCAGCAATCAGGACACAGCAACAGGAAGA-TCTCTCTTGAG  1147
      ||||||||||||||||||||||||| ||||| |||||| ||||  |||||
seq2  CCTTTAATCTCAGCAATCAGGACAC-GCAACGGGAAGATTCTCCTTTGAG  1138

seq1  TCAGAGACCAGCCTGATCTACAT  1170
      |||||   |||||||||||||||
seq2  TCAGA---CAGCCTGATCTACAT  1158