BAC Information

Click to search

BAC

Clone NameB6Ng01-168O16
Chromosome1 (Build37)
Map Location 68,418,608 - 68,587,581
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842, EG241084, Ikzf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168O16.bB6Ng01-168O16.g
ACCDH960031DH960032
length1,1511,149
definitionDH960031|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O16, 5' end.DH960032|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,586,430 - 68,587,581)(68,418,608 - 68,419,780)
sequence
gaattcattgtttttaatagctgagtagttctccattgtgtaaatatatc
acattttctgtatccattcctaaatcatgcaaattctaggggcacaatat
aaaattgattcatttttgtataatatttaagataaacaccatgttatttt
gagttcacatgtttttcactgaaaataattatgatgaaaaaatctacaaa
tctgccaggcaacggtggtgcactccttttatcctagcacttggaaggaa
gaggcagggggatttctgagtttgaggccagcctggtctacagagtaagt
tccaggacagctagggctgcacagaaaaaccctgtcaaaaaaaaaaaaag
tatgaatcaatgagtagacttccttttaaataaagtgaataaattggaat
aaataaaaataaagagctccatatacttattggaaaatgtacagaattat
aggatgcaatgccaacgactctgaagattacctatcccttgatactgttg
aacttgattcccagagaatttaaataattgaataaatatgagaagtgctt
tgtcataccattattcatgtgctctttctaaaatgtgatttgataagaca
ttagagagaaaggagtacaaaaataattttaaggaagcatgtaccactgc
atgtgcacattctcattggttaatggaaagaaaagaaacactgcaaatgt
ttgtgtaaatcagtttgttcacatataactgtattataagctcagatcac
cacatgtctataaaatattattaaatttgatgctatatctgataactgtt
tcttttgtctttccaagtaatacagaaggggtaataacattgtgttttat
atacccgtagctgtatggtttttacatcataagaaggaagggaagggaag
aatagcagtgaactttgcctctgataacactgccctcttgcagaatctgt
ggctggacactatatgtgcactacactgtcatctcatgtcctagaaatta
gatgtcatagtgatacatttttctaattaaaattatatcattatttcaaa
tgggtccttcgtgtgttcagggaaagaagctggaacaagaattactgttt
gggcttaaataccaataaggattaggaagctaattttcattgtgtactaa
a
gaattcactaaggacttttatattcattctttaagtggactgaagatcca
cttttaattgaagctatctagagtagagaataatctaccatttaatctac
gacttctttaattgtgtttggaataataaaatatttaacttttactcttc
atagttagaatgttactcatttaaaatataaaaaataaagggaaatagaa
aaaagtgacaccaaacataatcacaaacagtcactttagtattctattta
tttctggttgagttgaaatttttcttttggagtttcaattactaacctaa
gatttgtttccagaatcagtatgttacatacataaatatggacattgttt
atttatatattcaaaatacatttaaacttttgtgggaggttgagacaggg
tttctctgtatagccgttgctgtccttgaactcactctgtagaccaggct
ggccttgaactcagaaatctgcctgcctctgcctcccaagtgcttggatt
aaaggcgtgcgccaccaccgcccagcacatttaaacttttaagagtgaaa
tgtcactgaaaataatgtctgcagtttttgtcatacaatcatgacatagc
tctactattttgaaacatgttatatagtatacacccaaagagatgttaat
aatttcatcttgtttaccttctcattatgaaatgtcaattggttgacttc
atgtatatatcagtatttatcaaaatcctgtataattgtggaaaggatgc
taccaccagcagcttctctgggaatgcctatctttagcatcctcagtgtt
ctttgtaaagaacagctgagctgctggtacccacagttaagactgcttgg
actgcatatgccagctttctatcacactagggaggtttacttacttgaag
tctgcttttacagagggtcagcctctctatcttgaagagcttctacactt
ctgtccagagaatacactgcactggtggtttttaaaggaaagaccaacat
atttcactatgtatgcatgcagttagtgctaccatatgtgacaggatgct
gcaagtcttctttgaagtacatttgctatgtattatctctactgattgat
tctgtaagtactggagtattgaggttaattaattaaagttaaatagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_68586430_68587581
seq2: B6Ng01-168O16.b_49_1199 (reverse)

seq1  TTTAGTACAC-ATGATAATTAGGCTTTCTTAATTCCTAATGGTATTTTAG  49
      |||||||||| |||| ||||||   ||| |||| | || |||||||| ||
seq2  TTTAGTACACAATGAAAATTAG--CTTCCTAATCCTTATTGGTATTTAAG  48

seq1  -CCAAACAGTAATTCTTGTTCCAGCTCCTTTCCCTGAACACCACGAAGGA  98
       ||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  CCCAAACAGTAATTCTTGTTCCAGCTTCTTTCCCTGAACA-CACGAAGGA  97

seq1  -CCATTTGAAAT-ATGATATAATTTTAATTAGAAAAATGTATCACTATGA  146
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGAAATAATGATATAATTTTAATTAGAAAAATGTATCACTATGA  147

seq1  CATCTAATTTCTAAGGACATGAGATGACAGTGTAGTGCACATATAGTTGT  196
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  CATCTAATTTCT-AGGACATGAGATGACAGTGTAGTGCACATATAG-TGT  195

seq1  CCAGCCACAGATTCTGCAAGAGGGCAGTGTTATCAGGGGCAAAGTTCACT  246
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGCCACAGATTCTGCAAGAGGGCAGTGTTATCAGAGGCAAAGTTCACT  245

seq1  GCTATTCTTCCCTTCCCTTCCTTCTTATGATGTAGAAACCATACAGCTAC  296
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTATTCTTCCCTTCCCTTCCTTCTTATGATGTAAAAACCATACAGCTAC  295

seq1  GGGTATATAAAACACAATGTTATTACCCCTTCTGTATTACTTGGAAAGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATATAAAACACAATGTTATTACCCCTTCTGTATTACTTGGAAAGAC  345

seq1  AAAAGAAACAGTTATCAGATATAGCATCAAATTTAATAATATTTTATAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACAGTTATCAGATATAGCATCAAATTTAATAATATTTTATAGA  395

seq1  CATGTGGTGATCTGAGCTTATAATACAGTTATATGTGAACAAACTGATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTGATCTGAGCTTATAATACAGTTATATGTGAACAAACTGATTT  445

seq1  ACACAAACATTTGCAGTGTTTCTTTTCTTTCCATTAACCAATGAGAATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACATTTGCAGTGTTTCTTTTCTTTCCATTAACCAATGAGAATGT  495

seq1  GCACATGCAGTGGTACATGCTTCCTTAAAATTATTTTTGTACTCCTTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCAGTGGTACATGCTTCCTTAAAATTATTTTTGTACTCCTTTCT  545

seq1  CTCTAATGTCTTATCAAATCACATTTTAGAAAGAGCACATGAATAATGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGTCTTATCAAATCACATTTTAGAAAGAGCACATGAATAATGGT  595

seq1  ATGACAAAGCACTTCTCATATTTATTCAATTATTTAAATTCTCTGGGAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAGCACTTCTCATATTTATTCAATTATTTAAATTCTCTGGGAAT  645

seq1  CAAGTTCAACAGTATCAAGGGATAGGTAATCTTCAGAGTCGTTGGCATTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAACAGTATCAAGGGATAGGTAATCTTCAGAGTCGTTGGCATTG  695

seq1  CATCCTATAATTCTGTACATTTTCCAATAAGTATATGGAGCTCTTTATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTATAATTCTGTACATTTTCCAATAAGTATATGGAGCTCTTTATTT  745

seq1  TTATTTATTCCAATTTATTCACTTTATTTAAAAGGAAGTCTACTCATTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTCCAATTTATTCACTTTATTTAAAAGGAAGTCTACTCATTGA  795

seq1  TTCATACTTTTTTTTTTTTTGACAGGGTTTTTCTGTGCAGCCCTAGCTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTTTTTTTTTTTTTGACAGGGTTTTTCTGTGCAGCCCTAGCTGT  845

seq1  CCTGGAACTTACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTTACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCCCC  895

seq1  TGCCTCTTCCTTCCAAGTGCTAGGATAAAAGGAGTGCACCACCGTTGCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTCCTTCCAAGTGCTAGGATAAAAGGAGTGCACCACCGTTGCCT  945

seq1  GGCAGATTTGTAGATTTTTTCATCATAATTATTTTCAGTGAAAAACATGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATTTGTAGATTTTTTCATCATAATTATTTTCAGTGAAAAACATGT  995

seq1  GAACTCAAAATAACATGGTGTTTATCTTAAATATTATACAAAAATGAATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAAATAACATGGTGTTTATCTTAAATATTATACAAAAATGAATC  1045

seq1  AATTTTATATTGTGCCCCTAGAATTTGCATGATTTAGGAATGGATACAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATATTGTGCCCCTAGAATTTGCATGATTTAGGAATGGATACAGA  1095

seq1  AAATGTGATATATTTACACAATGGAGTACTACTCAGCTATTAAAAACAAT  1146
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATGTGATATATTTACACAATGGAGAACTACTCAGCTATTAAAAACAAT  1145

seq1  GAATTC  1152
      ||||||
seq2  GAATTC  1151

seq1: chr1_68418608_68419780
seq2: B6Ng01-168O16.g_68_1216

seq1  GAATTCACTAAGGACTTTTATATTCATTCTTTAAGTGGACTGAAGATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAGGACTTTTATATTCATTCTTTAAGTGGACTGAAGATCCA  50

seq1  CTTTTAATTGAAGCTATCTAGAGTAGAGAATAATCTACCATTTAATCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTGAAGCTATCTAGAGTAGAGAATAATCTACCATTTAATCTAC  100

seq1  GACTTCTTTAATTGTGTTTGGAATAATAAAATATTTAACTTTTACTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTTAATTGTGTTTGGAATAATAAAATATTTAACTTTTACTCTTC  150

seq1  ATAGTTAGAATGTTACTCATTTAAAATATAAAAAATAAAGGGAAATAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAGAATGTTACTCATTTAAAATATAAAAAATAAAGGGAAATAGAA  200

seq1  AAAAGTGACACCAAACATAATCACAAACAGTCACTTTAGTATTCTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGACACCAAACATAATCACAAACAGTCACTTTAGTATTCTATTTA  250

seq1  TTTCTGGTTGAGTTGAAATTTTTCTTTTGGAGTTTCAATTACTAACCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTTGAGTTGAAATTTTTCTTTTGGAGTTTCAATTACTAACCTAA  300

seq1  GATTTGTTTCCAGAATCAGTATGTTACATACATAAATATGGACATTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTTCCAGAATCAGTATGTTACATACATAAATATGGACATTGTTT  350

seq1  ATTTATATATTCAAAATACATTTAAACTTTTGTGGGAGGTTGAGACAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATATTCAAAATACATTTAAACTTTTGTGGGAGGTTGAGACAGGG  400

seq1  TTTCTCTGTATAGCCGTTGCTGTCCTTGAACTCACTCTGTAGACCAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTATAGCCGTTGCTGTCCTTGAACTCACTCTGTAGACCAGGCT  450

seq1  GGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTTGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTTGGATT  500

seq1  AAAGGCGTGCGCCACCACCGCCCAGCACATTTAAACTTTTAAGAGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTGCGCCACCACCGCCCAGCACATTTAAACTTTTAAGAGTGAAA  550

seq1  TGTCACTGAAAATAATGTCTGCAGTTTTTGTCATACAATCATGACATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGAAAATAATGTCTGCAGTTTTTGTCATACAATCATGACATAGC  600

seq1  TCTACTATTTTGAAACATGTTATATAGTATACACCCAAAGAGATGTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTATTTTGAAACATGTTATATAGTATACACCCAAAGAGATGTTAAT  650

seq1  AATTTCATCTTGTTTACCTTCTCATTATGAAATGTCAATTGGTTGACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATCTTGTTTACCTTCTCATTATGAAATGTCAATTGGTTGACTTC  700

seq1  ATGTATATATCAGTATTTATCAAAATCCTGTATAATTGTGGAAAGGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATCAGTATTTATCAAAATCCTGTATAATTGTGGAAAGGATGC  750

seq1  TACCACCAGCAGCTTCTCTGGGAATGCCTATCTTTAGCATCCTCAGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCAGCAGCTTCTCTGGGAATGCCTATCTTTAGCATCCTCAGTGTT  800

seq1  CTTTGTAAAGAACAGCTGAGCTGCTGGTACCCACAGTTAAGACTGCTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAAAGAACAGCTGAGCTGCTGGTACCCACAGTTAAGACTGCTTGG  850

seq1  ACTGCATATGCCAGCTTTCTATCACACTAGGGAGGTTTACTTACTTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATATGCCAGCTTTCTATCACACTAGGGAGGTTTACTTACTTGAAG  900

seq1  TCTGCTTTTACAGAGGGTCAGCCTCTCCTATCTTGAAGAGCTTCTACACT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  TCTGCTTTTACAGAGGGTCAGCCTCT-CTATCTTGAAGAGCTTCTACAC-  948

seq1  TTCTGTCCAGAGAATACACTGCACT-GTGGTTTTTAAAGGAAAGACCAAC  999
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTGTCCAGAGAATACACTGCACTGGTGGTTTTTAAAGGAAAGACCAAC  998

seq1  ATTATTTTCACTATGTTATTGCAATGCAGTTAGTGCTACCATATGTGACC  1049
      ||   |||||||||||   ||| ||||||||||||||||||||||||| |
seq2  AT--ATTTCACTATGT--ATGC-ATGCAGTTAGTGCTACCATATGTGA-C  1042

seq1  AGGATGCTGCAAGTCTTCTTTTGGAAGTAACCATTTGCTATGTATTTATC  1099
      |||||||||||||||||||||  ||||||  ||||||||||||| |||| 
seq2  AGGATGCTGCAAGTCTTCTTT--GAAGTA--CATTTGCTATGTA-TTAT-  1086

seq1  CTCTACCTGATTTGATTCTTGTAGGTAACTGGAGTATATGAAGGTATATA  1149
      ||||| |||| ||||||| |||| || |||||||||| || |||| ||  
seq2  CTCTA-CTGA-TTGATTC-TGTAAGT-ACTGGAGTAT-TG-AGGT-TAAT  1129

seq1  TAATTAAATGTTTTAAATATGTGC  1173
      ||||||||    ||||||| ||||
seq2  TAATTAAA---GTTAAATA-GTGC  1149