BAC Information

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BAC

Clone NameB6Ng01-168P15
Chromosome1 (Build37)
Map Location 99,884,550 - 99,885,798
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168P15.bB6Ng01-168P15.g
ACCDH960075DH960076
length1,2281,194
definitionDH960075|Mus musculus domesticus DNA, BAC clone: B6Ng01-168P15, 5' end.DH960076|Mus musculus domesticus DNA, BAC clone: B6Ng01-168P15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatattttaagtcatgcataattaaaatcaatagtacacctagga
ataagacatgctaattgtttcctacagttaatttcacccacactctctgg
gaatttggggaggaaatgtactagtatgaaatatagggcaaatgtcttag
aactggagtctaaaacatggttccaagtcttattttagcaatctacttca
catgggctaaaagtgaggaccatgttcaattgcccatcaaagggctcttg
aaagagacaaaacaattggggccaattctgtagaataaagcaccaaggaa
atcataatctaatattagggttttggatgtgactttatcagtagaaatat
aaaatctctctttgatcttcccaatttagcactgttcattctggatctat
ttatagcttatcttcaagtatcttttcagatagtagaacaagttcagaca
gcagacactttacaattactgaagagttgagaaaaagcatggtttgactc
aattcagttatcctattgtacacagacacacacagagacacacacagaca
gacagacacagacagacagacagacacacacacacaagcaaaattagatg
ggtgggacaaatacagtaactttgtccactaaaatttcaactgaaaacac
gtgattaatgtagtcaatattttttccaatttatattgcaaagtatagct
tcaactttcaaccactgtgataaaatactacctaacacaaacaacttaaa
aagaaagatactgaggtttacttcccatcagctgtgccttggcctcatca
ttttgtacctgtgataagatgtcttggtgggaaaggagtgtcagagcaga
gctgtttatcccatgacatccaggaagcaagcagaccggaggaagagaca
ccatgacccccacagaggcatgccttgatgacttacttcctgaatcatgt
cctccctcctaaagttgccaccacctatcagagctctactagctgagaca
gctttatcatttagttttggagggcatttaaaccagaaacactaaacatt
attactgtgtgtgtggtgcgcgcgcgcatgtaccatggtgcacaagaact
gactggtaatagtccacattttatgtttcatgaacagacctctataacca
actcacggatctggaccagccagtaatctgcgataggaaacaatttttat
tccaacccagttaggaattctggtacaa
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtgacttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatgatcaatttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttaatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttcacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctaggg
ctttagatgtgttgtcaagctgctagtatgtgctatctcccgtttcttct
tggagcactcagagctatgagttttcctctagaatgctttcatgtgtccc
aaggtttgggtacgtgtgctcatttcattaactcttaagtcttattcttc
ttaattctcttgacaaggtatcattgaaaagaaggttattcagtttccac
agtgatgtgcctttcaatctatgtgtgtatggagatcgctaggccatggg
tcgtatgatctggacattcaatattgtggtctatgagggcgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99884550_99885798
seq2: B6Ng01-168P15.b_46_1273

seq1  GAATTCATATTTTAAGTCATGCATAATTAAAATCAATAGTACACCTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTTTAAGTCATGCATAATTAAAATCAATAGTACACCTAGGA  50

seq1  ATAAGACATGCTAATTGTTTCCTACAGTTAATTTCACCCACACTCTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACATGCTAATTGTTTCCTACAGTTAATTTCACCCACACTCTCTGG  100

seq1  GAATTTGGGGAGGAAATGTACTAGTATGAAATATAGGGCAAATGTCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGGGGAGGAAATGTACTAGTATGAAATATAGGGCAAATGTCTTAG  150

seq1  AACTGGAGTCTAAAACATGGTTCCAAGTCTTATTTTAGCAATCTACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGTCTAAAACATGGTTCCAAGTCTTATTTTAGCAATCTACTTCA  200

seq1  CATGGGCTAAAAGTGAGGACCATGTTCAATTGCCCATCAAAGGGCTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCTAAAAGTGAGGACCATGTTCAATTGCCCATCAAAGGGCTCTTG  250

seq1  AAAGAGACAAAACAATTGGGGCCAATTCTGTAGAATAAAGCACCAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACAAAACAATTGGGGCCAATTCTGTAGAATAAAGCACCAAGGAA  300

seq1  ATCATAATCTAATATTAGGGTTTTGGATGTGACTTTATCAGTAGAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATCTAATATTAGGGTTTTGGATGTGACTTTATCAGTAGAAATAT  350

seq1  AAAATCTCTCTTTGATCTTCCCAATTTAGCACTGTTCATTCTGGATCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCTCTTTGATCTTCCCAATTTAGCACTGTTCATTCTGGATCTAT  400

seq1  TTATAGCTTATCTTCAAGTATCTTTTCAGATAGTAGAACAAGTTCAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTTATCTTCAAGTATCTTTTCAGATAGTAGAACAAGTTCAGACA  450

seq1  GCAGACACTTTACAATTACTGAAGAGTTGAGAAAAAGCATGGTTTGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACTTTACAATTACTGAAGAGTTGAGAAAAAGCATGGTTTGACTC  500

seq1  AATTCAGTTATCCTATTGTACACAGACACACACAGAGACACACACAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTTATCCTATTGTACACAGACACACACAGAGACACACACAGACA  550

seq1  GACAGACACAGACAGACAGACAGACACACACACACAAGCAAAATTAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACACAGACAGACAGACAGACACACACACACAAGCAAAATTAGATG  600

seq1  GGTGGGACAAATACAGTAACTTTGTCCACTAAAATTTCAACTGAAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACAAATACAGTAACTTTGTCCACTAAAATTTCAACTGAAAACAC  650

seq1  GTGATTAATGTAGTCAATATTTTTTCCAATTTATATTGCAAAGTATAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAATGTAGTCAATATTTTTTCCAATTTATATTGCAAAGTATAGCT  700

seq1  TCAACTTTCAACCACTGTGATAAAATACTACCTAACACAAACAACTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTCAACCACTGTGATAAAATACTACCTAACACAAACAACTTAAA  750

seq1  AAGAAAGATACTGAGGTTTACTTCCCATCAGCTGTGCCTTGGCCTCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGATACTGAGGTTTACTTCCCATCAGCTGTGCCTTGGCCTCATCA  800

seq1  TTTTGTACCTGTGATAAGATGTCTTGGTGGGAAAGGAGTGTCAGAGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTACCTGTGATAAGATGTCTTGGTGGGAAAGGAGTGTCAGAGCAGA  850

seq1  GCTGTTTATCCCATGACATCCAGGAAGCAAGCAGACCGGAGGAAGAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTATCCCATGACATCCAGGAAGCAAGCAGACCGGAGGAAGAGACA  900

seq1  CCATGACCCCCACAGAGGCATGCCCTTGATGACTTACTTCCTGAATCATG  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCATGACCCCCACAGAGGCATG-CCTTGATGACTTACTTCCTGAATCATG  949

seq1  TCCTCCCTCCTAAAGTTGCCACCACCTATCAAGAGCTCTACTAGCTGAGA  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCCTCCCTCCTAAAGTTGCCACCACCTATC-AGAGCTCTACTAGCTGAGA  998

seq1  ACAAGCTTTATCATTTAGTTTTTGGAGGGCATTTAAAACCAAGGAAACAC  1050
         ||||||||||||||| ||||||||||||||| ||||||  |||||||
seq2  --CAGCTTTATCATTTAG-TTTTGGAGGGCATTT-AAACCA--GAAACAC  1042

seq1  TAAAACATTATTAACTGTGTGTGT-GTGCGCGCGCGCATGTACACAT-GT  1098
      | |||||||||| ||||||||||| |||||||||||||||||| ||| ||
seq2  T-AAACATTATT-ACTGTGTGTGTGGTGCGCGCGCGCATGTAC-CATGGT  1089

seq1  GCACAAGAACTGACTGGTAATTAAGTCACAATTTTATGTTTCATG-ACAG  1147
      |||||||||||||||||||||  ||||   ||||||||||||||| ||||
seq2  GCACAAGAACTGACTGGTAAT--AGTCCACATTTTATGTTTCATGAACAG  1137

seq1  A-CTCTATAAACTCAGACTCACAGATCT-GACCAGCCCAAGTAATCTGCA  1195
      | ||||||||   |  |||||| ||||| ||||||||  |||||||||| 
seq2  ACCTCTATAA---CCAACTCACGGATCTGGACCAGCC--AGTAATCTGCG  1182

seq1  GTAGAGGAAAACACATATTTATATTCCAAACCCAGTTAGGTATTTCTGGA  1245
       ||   | |||||   |||| |||||| |||||||||||| | |||||| 
seq2  ATA---GGAAACA---ATTTTTATTCC-AACCCAGTTAGG-AATTCTGGT  1224

seq1  ACAA  1249
      ||||
seq2  ACAA  1228